View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3470_high_51 (Length: 286)

Name: NF3470_high_51
Description: NF3470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3470_high_51
NF3470_high_51
[»] chr7 (4 HSPs)
chr7 (10-228)||(3614546-3614764)
chr7 (55-228)||(35611783-35611955)
chr7 (11-228)||(5569016-5569241)
chr7 (249-286)||(3614796-3614833)
[»] scaffold1903 (1 HSPs)
scaffold1903 (14-228)||(860-1073)
[»] chr4 (1 HSPs)
chr4 (11-228)||(9981789-9981990)
[»] chr2 (1 HSPs)
chr2 (122-209)||(15480846-15480935)
[»] chr3 (2 HSPs)
chr3 (129-193)||(33129907-33129968)
chr3 (55-99)||(33129742-33129785)


Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 10 - 228
Target Start/End: Original strand, 3614546 - 3614764
Alignment:
Q  10 gcagagaaccaacccaatcttcaatttccttgcgttcaatttttcttcaatttcccttgctacattcacatattcacattcatattctttcctttacctt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3614546 gcagagaaccaacccaatcttcaatttccttgcgttcaatttttcttcaatttcccttgctacattcacatattcacattcatattctttcctttacctt 3614645  T
Q  110 ctctttctaacgattctctttctaatatgctacaaaaatcattttcttcatccttaccttattattctcactccacccattgtttgtacttgttcttgtt 209  Q
    || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3614646 ctatttctaacgattctctttctaatatgctacaaaaatcatcttcttcatccttaccttattattctcactccacccattgtttgtacttgttcttgtt 3614745  T
Q  210 actgcagttttttaacata 228  Q
    ||||| |||||||||||||    
T  3614746 actgctgttttttaacata 3614764  T

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Target: chr7; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 55 - 228
Target Start/End: Complemental strand, 35611955 - 35611783
Alignment:
Q  55 ttcaatttcccttgctacattcacatattcacattcatattctttcctttaccttctctttctaacgattctctttctaatatgctacaaaaatcatttt 154  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| |  |||||||||||||| |||||||||||||||||||| ||||||||| ||    
T  35611955 ttcaatttccct-gctacattcacatattcacattcatattctttcctctgacttctctttctaaccattctctttctaatatgctaaaaaaatcatctt 35611857  T
Q  155 cttcatccttaccttattattctcactccacccattgtttgtacttgttcttgttactgcagttttttaacata 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||    
T  35611856 cttcatccttaccttattattctcactccacccattgtttgtacttgttcttgttattgctgtttttgaacata 35611783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 11 - 228
Target Start/End: Complemental strand, 5569241 - 5569016
Alignment:
Q  11 cagagaaccaacccaatcttcaatttccttgcgttcaatttttcttcaatttcccttgctacattcacatattcacattcatattctttcctttaccttc 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| |||||||    
T  5569241 cagagaaccaacccaatcttcaatttccttgcgttcaatttttcttcaatttcccta-ctacattcacatattcacattcatattctttcctctaccttc 5569143  T
Q  111 tctttctaacgattctct------------ttctaatatgctacaaaaatcattttcttcatccttaccttattattctcactccacccattgtttgtac 198  Q
    |||||||||| |||||||            |||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||| ||     
T  5569142 tctttctaaccattctctttctctttctctttctaatatgctacaaaaatc---ttcttcatccttaccttattattctcactccacccattgtttatag 5569046  T
Q  199 ttgttcttgttactgcagttttttaacata 228  Q
    || ||||||||| ||  |||||| ||||||    
T  5569045 tttttcttgttattgttgtttttgaacata 5569016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 286
Target Start/End: Original strand, 3614796 - 3614833
Alignment:
Q  249 tccattttgatgaattgggtatttttattgttgtttct 286  Q
    ||||||||||||||||||||||||||||||||||||||    
T  3614796 tccattttgatgaattgggtatttttattgttgtttct 3614833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1903 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: scaffold1903
Description:

Target: scaffold1903; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 14 - 228
Target Start/End: Complemental strand, 1073 - 860
Alignment:
Q  14 agaaccaacccaatcttcaatttccttgcgttcaatttttcttcaatttcccttgctacattcacatattcacattcatattctttcctttaccttctct 113  Q
    ||||||||||||||||||||||||||||| || |||||||||||||||||||| |  |||||||||||||||||||||||||||||||| ||||||||||    
T  1073 agaaccaacccaatcttcaatttccttgcatttaatttttcttcaatttccct-gtaacattcacatattcacattcatattctttcctctaccttctct 975  T
Q  114 ttctaacgattctctttctaatatgctacaaaaatcattttcttcatccttaccttattattctcactccacccattgtttgtacttgttcttgttactg 213  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  974 ttctaaccattctctttctaatatgctacaaaaatcatcttcttcatccataccttattattctcactccacccattgtttgtacttgttcttgttattg 875  T
Q  214 cagttttttaacata 228  Q
    | |||||| ||||||    
T  874 ctgtttttgaacata 860  T

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Target: chr4 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 11 - 228
Target Start/End: Complemental strand, 9981990 - 9981789
Alignment:
Q  11 cagagaaccaacccaatcttcaatttccttgcgttcaatttttcttcaatttcccttgctacattcacatattcacattcatattctttcctttaccttc 110  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||       
T  9981990 cagagaaccaacccaatcttcaatttccttgcgttcaaattttcttcaattt-ccatgctacattcacatattcacattcatattctttcctctacc--- 9981895  T
Q  111 tctttctaacgattctctttctaatatgctacaaaaatcattttcttcatccttaccttattattctcactccacccattgtttgtacttgttcttgtta 210  Q
                ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9981894 ------------ttctctttctaatatgctacaaaaatcatcttcttcatccttaccttattattctcactccacccattgtttgtacttgttcttgtta 9981807  T
Q  211 ctgcagttttttaacata 228  Q
     ||  |||||| ||||||    
T  9981806 ttgttgtttttgaacata 9981789  T

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Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 122 - 209
Target Start/End: Complemental strand, 15480935 - 15480846
Alignment:
Q  122 attctctttctaatatgctacaaaaatcattttcttcatccttaccttattattctcactccacccattgtt--tgtacttgttcttgtt 209  Q
    |||||||||||||||||| ||||| ||| |  |||||||||||||||||| |||||||||||||||||||||  ||| ||||||||||||    
T  15480935 attctctttctaatatgcaacaaacatcttcctcttcatccttaccttatcattctcactccacccattgttcatgtccttgttcttgtt 15480846  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 129 - 193
Target Start/End: Original strand, 33129907 - 33129968
Alignment:
Q  129 ttctaatatgctacaaaaatcattttcttcatccttaccttattattctcactccacccattgtt 193  Q
    ||||||||||||||||| ||| |   |||||||||||||||||||||||||||||||||||||||    
T  33129907 ttctaatatgctacaaacatcct---cttcatccttaccttattattctcactccacccattgtt 33129968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 99
Target Start/End: Original strand, 33129742 - 33129785
Alignment:
Q  55 ttcaatttcccttgctacattcacatattcacattcatattcttt 99  Q
    |||||||||||| |||||||||||| |||||||||||||||||||    
T  33129742 ttcaatttccct-gctacattcacacattcacattcatattcttt 33129785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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