View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3470_high_56 (Length: 255)
Name: NF3470_high_56
Description: NF3470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3470_high_56 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 16 - 238
Target Start/End: Original strand, 30100469 - 30100691
Alignment:
| Q |
16 |
caaaaggtagtgttgtgacagtgtcacctgatatattaactttcaaatataaaaatgagaaacaaagttacaacattatcataaagtatgttatgtacaa |
115 |
Q |
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| T |
30100469 |
caaaaggtagtgttgtgacagtgtcacctgatatattaactttcaaatataaaaatgagaaacaaagttacaacattatcataaagtatgttatgtacaa |
30100568 |
T |
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| Q |
116 |
gaaggaaaatgtttcatttggggatcttgtttggattgaagatggtggagcacacattgttagaagtcctattgtagtggcaccaactggaattgtatga |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
30100569 |
gaaggaaaatgtttcatttggggatcttgtttggattgaagatggtggagcacacattgttagaagtcctattgtagtggcaccaactggaatcgtatga |
30100668 |
T |
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| Q |
216 |
gttattctaaatttttctggcca |
238 |
Q |
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||||||||||||||||||||||| |
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| T |
30100669 |
gttattctaaatttttctggcca |
30100691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 16 - 216
Target Start/End: Complemental strand, 30090447 - 30090247
Alignment:
| Q |
16 |
caaaaggtagtgttgtgacagtgtcacctgatatattaactttcaaatataaaaatgagaaacaaagttacaacattatcataaagtatgttatgtacaa |
115 |
Q |
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|||||||| |||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| | || ||||||||| ||| |||||||| |
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| T |
30090447 |
caaaaggttgtgtgatgacagtgttacctgatatattaactttcaaatatagaaatgagaaacaaagttactcccttgtcataaagtgtgtcatgtacaa |
30090348 |
T |
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| Q |
116 |
gaaggaaaatgtttcatttggggatcttgtttggattgaagatggtggagcacacattgttagaagtcctattgtagtggcaccaactggaattgtatga |
215 |
Q |
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|||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||| |
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| T |
30090347 |
gaaggataatgtttcatttggggatcttgtttggattgaatatggtggagcacacactgttagaagtcctattgtagtggcaccaaggggaattatatga |
30090248 |
T |
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| Q |
216 |
g |
216 |
Q |
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| |
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| T |
30090247 |
g |
30090247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 18 - 216
Target Start/End: Complemental strand, 30087193 - 30086995
Alignment:
| Q |
18 |
aaaggtagtgttgtgacagtgtcacctgatatattaactttcaaatataaaaatgagaaacaaagttacaacattatcataaagtatgttatgtacaaga |
117 |
Q |
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|||||| |||| |||| ||||| |||||| ||||||||||||| |||| ||||||||||||||||||| ||||||||||||||| || |||||||||| |
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| T |
30087193 |
aaaggttgtgtggtgagagtgttacctgaaatattaactttcagttatagaaatgagaaacaaagttactacattatcataaagtgtgacatgtacaaga |
30087094 |
T |
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| Q |
118 |
aggaaaatgtttcatttggggatcttgtttggattgaagatggtggagcacacattgttagaagtcctattgtagtggcaccaactggaattgtatgag |
216 |
Q |
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|| || ||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
30087093 |
agaaatatgtttcatttggtgatcttgtttggattgaagatggtggagtacacactgttagaagtcctattgtagtggcaccaactggaattatatgag |
30086995 |
T |
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