View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3470_high_57 (Length: 253)
Name: NF3470_high_57
Description: NF3470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3470_high_57 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 9 - 253
Target Start/End: Complemental strand, 3206439 - 3206195
Alignment:
| Q |
9 |
agcagagactgtggacccctcaatccacatcaaccattgattacatatcttatcttaatcttaattttaataaacaaacttgaagcatgttttagacctc |
108 |
Q |
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| T |
3206439 |
agcagagactatggacccctcaatccacatcaaccattgattacatatcttatcttaatcttaattttaataaacaaacttgaagcatgttttagacctc |
3206340 |
T |
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| Q |
109 |
caatccaatgtgtcacaattctaagctatcaatgccaaatcaacatttcttaaagtctcattttatcataaaaaatagtaactaggagtagaaacgcatg |
208 |
Q |
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| T |
3206339 |
caatccaatgtgtcacaattctaagctaccaatgcctaatcaacatttcttaaagtctaattttatcataaaaaatagtaactaggagtagaaacgcatg |
3206240 |
T |
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| Q |
209 |
taattcatatcatttcacatttttaaattcatcaaattttcaatt |
253 |
Q |
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| T |
3206239 |
taattcatatcatttcacatttttaaattcatcaaattttcaatt |
3206195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 3236941 - 3236900
Alignment:
| Q |
15 |
gactgtggacccctcaatccacatcaaccattgattacatat |
56 |
Q |
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| T |
3236941 |
gactatggaccccacaatccacatcaaccattgattgcatat |
3236900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 98 - 150
Target Start/End: Original strand, 2775800 - 2775852
Alignment:
| Q |
98 |
ttttagacctccaatccaatgtgtcacaattctaagctatcaatgccaaatca |
150 |
Q |
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| T |
2775800 |
ttttagacctccaatccaatgtgtcaaaattctaagcctccaatgccaaatca |
2775852 |
T |
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