View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3470_high_58 (Length: 253)

Name: NF3470_high_58
Description: NF3470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3470_high_58
NF3470_high_58
[»] chr1 (22 HSPs)
chr1 (1-236)||(35262947-35263184)
chr1 (1-202)||(35270406-35270609)
chr1 (1-183)||(35276531-35276707)
chr1 (1-166)||(35224921-35225086)
chr1 (1-180)||(35199926-35200105)
chr1 (1-187)||(35147351-35147528)
chr1 (1-187)||(35190359-35190536)
chr1 (12-166)||(35295862-35296016)
chr1 (17-202)||(35248242-35248427)
chr1 (9-187)||(45525454-45525629)
chr1 (19-163)||(8638909-8639056)
chr1 (20-98)||(35252152-35252230)
chr1 (7-166)||(35219069-35219231)
chr1 (18-98)||(35208211-35208289)
chr1 (8-63)||(35212077-35212132)
chr1 (17-63)||(35194604-35194650)
chr1 (8-61)||(35476415-35476468)
chr1 (1-96)||(34309427-34309522)
chr1 (31-96)||(45531643-45531708)
chr1 (9-69)||(35205014-35205074)
chr1 (1-63)||(35189422-35189484)
chr1 (11-140)||(35474028-35474156)
[»] chr3 (5 HSPs)
chr3 (9-52)||(23331914-23331957)
chr3 (19-63)||(899766-899810)
chr3 (14-58)||(53924271-53924315)
chr3 (1-61)||(17664562-17664622)
chr3 (1-61)||(19246965-19247025)
[»] chr2 (2 HSPs)
chr2 (9-52)||(33138622-33138665)
chr2 (10-48)||(18558754-18558792)
[»] chr7 (1 HSPs)
chr7 (8-96)||(38631962-38632050)


Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 35263184 - 35262947
Alignment:
Q  1 gattggaacgtcctagtgtgagaagcgatgggtggttggagattgagatgggggagttcttcagtttaggcatagaaaatgaagaagtccagatgaattt 100  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  35263184 gattgcaacgtcctagtgtgagaagcgatgggtggttggagattgagatgggggagttcttcagttcaggcatagaaaatgaagaagtccagatgaattt 35263085  T
Q  101 gttggagataaaggctggtaattggaagagtggtctctttcttgaaggaatagaaattaggcctaaataacacaattaagcagcatttactatactatgc 200  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35263084 gttagagataaaggctggtaattggaagagtggtctctttcttgaaggaatagaaattaggcctaaataacacaattaagcagcatttactatactatgc 35262985  T
Q  201 aaaaggggt----tgtcttggttggcagaataatgtttct 236  Q
      |||||||    |||||||||||||||||||||||||||    
T  35262984 --aaggggtcttgtgtcttggttggcagaataatgtttct 35262947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 35270609 - 35270406
Alignment:
Q  1 gattggaacgtcctagtgtgagaagcgatgggtggttggagattgagatgggggagttcttcagtttaggcatagaaaatgaagaagtccagatgaattt 100  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |    
T  35270609 gattgcaacgtcctagtgtgagaagtgatgggtggttggagattgagatgggggagttcttcaattcaggcatagaaaatgaagaagtccagatgaatgt 35270510  T
Q  101 gttggagataaaggctggtaattggaagagtggtctctttcttgaaggaatagaaattaggcctaa--ataacacaattaagcagcatttactatactat 198  Q
    | |  ||| ||||| ||||||||||||||| |||||  ||||||||||||||||| ||||||||||  ||||||||||||| || |||| |||  |||||    
T  35270509 gatacagacaaagggtggtaattggaagagaggtctagttcttgaaggaatagaagttaggcctaagtataacacaattaaccaacattcactgaactat 35270410  T
Q  199 gcaa 202  Q
    ||||    
T  35270409 gcaa 35270406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 35276707 - 35276531
Alignment:
Q  1 gattggaacgtcctagtgtgagaagcgatgggtggttggagattgagatgggggagttcttcagtttaggcatagaaaatgaagaagtccagatgaattt 100  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||   ||  ||||||||| ||||||||| |    
T  35276707 gattgcaacgtcctagtgtgagaagagatgggtggttggagattgagatgggggagttcttcaattcaggca---aatgtgaagaagttcagatgaatgt 35276611  T
Q  101 gttggagataaaggctggtaattggaagagtggtctctttcttgaaggaatagaaattaggcctaaataacacaattaagcag 183  Q
    | |||||||||||| |||   ||||||||||||||||||||||||||| ||| ||||||||||||| |||||| |||||||||    
T  35276610 gatggagataaagggtgg---ttggaagagtggtctctttcttgaagggatataaattaggcctaagtaacaccattaagcag 35276531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 35225086 - 35224921
Alignment:
Q  1 gattggaacgtcctagtgtgagaagcgatgggtggttggagattgagatgggggagttcttcagtttaggcatagaaaatgaagaagtccagatgaattt 100  Q
    ||||| ||||||||| ||||||||||||||| ||||| |||||||||||||| |||||||||| || |||| ||||| ||||||||||||| |||| | |    
T  35225086 gattgcaacgtcctaatgtgagaagcgatggctggttagagattgagatgggagagttcttcatttcaggcctagaagatgaagaagtccaaatgagtgt 35224987  T
Q  101 gttggagataaaggctggtaattggaagagtggtctctttcttgaaggaatagaaattaggcctaa 166  Q
      | || ||||||| |||| |||||||||| ||| ||||| |||||||||||||| ||||||||||    
T  35224986 tattgatataaagggtggtcattggaagagaggtttctttgttgaaggaatagaagttaggcctaa 35224921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 35200105 - 35199926
Alignment:
Q  1 gattggaacgtcctagtgtgagaagcgatgggtggttggagattgagatgggggagttcttcagtttaggcatagaaaatgaagaagtccagatgaattt 100  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||| || ||||||||||||| || ||||  |||| |||||||||| || |||||| |    
T  35200105 gattgcaacgccctagtgtgagaagcgatgggtggttggagattgaaatcggggagttcttcaattcaggcgaagaagatgaagaagttcaaatgaatat 35200006  T
Q  101 gttggagataaaggctggtaattggaagagtggtctctttcttgaaggaatagaaattaggcctaaataacacaattaag 180  Q
       ||||| | | | |  ||||| ||||||||||||||||||||||||||||||| | |||||||| ||| |||||||||    
T  35200005 aaaggagacagatgattataattcgaagagtggtctctttcttgaaggaatagaagtcaggcctaagtaagacaattaag 35199926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 35147528 - 35147351
Alignment:
Q  1 gattggaacgtcctagtgtgagaagcgatgggtggttggagattgagatgggggagttcttcagtttaggcatagaaaatgaagaagtccagatgaattt 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||   |||| || |||| ||||| ||| ||| |||| ||||||| |    
T  35147528 gattgcaacgtcctagtgtgagaagcgatgggtggttggagattgagatgggggag---ttcaattcaggcctagaagatggagacgtcctgatgaatgt 35147432  T
Q  101 gttggagataaaggctggtaattggaagagtggtctctttcttgaaggaatagaaattaggcctaaataacacaattaagcagcatt 187  Q
       ||||| |||      |||||||||||||||||||||| |||||||||||||| |||||||||| ||| || |||||||| ||||    
T  35147431 taaggagacaaa------taattggaagagtggtctctttgttgaaggaatagaagttaggcctaagtaagaccattaagcaacatt 35147351  T

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Target: chr1; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 35190536 - 35190359
Alignment:
Q  1 gattggaacgtcctagtgtgagaagcgatgggtggttggagattgagatgggggagttcttcagtttaggcatagaaaatgaagaagtccagatgaattt 100  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||||||| || |||||||||| || |||| |||||   || |||||||| |||||| |    
T  35190536 gattgcaacgtcctagtgtgagaagtgatgggtggttggagattgagatcggagagttcttcaattcaggcctagaa---gatgaagtccaaatgaatgt 35190440  T
Q  101 gttggagataaaggctggtaattggaagagtggtctctttcttgaaggaatagaaattaggcctaaataacacaattaagcagcatt 187  Q
       ||||| |||      |||||||||||| |||||||||||||||||||||||| |||||||||| ||| || ||| |||| ||||    
T  35190439 taaggagacaaa------taattggaagagaggtctctttcttgaaggaatagaagttaggcctaagtaagaccattcagcaacatt 35190359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 12 - 166
Target Start/End: Original strand, 35295862 - 35296016
Alignment:
Q  12 cctagtgtgagaagcgatgggtggttggagattgagatgggggagttcttcagtttaggcatagaaaatgaagaagtccagatgaatttgttggagataa 111  Q
    |||||||||||||| |||||||||||||||||||||||||| |||||||||| || |||| ||| | ||||||||||||| |||| | |  |||| | ||    
T  35295862 cctagtgtgagaagtgatgggtggttggagattgagatgggagagttcttcaattcaggcttagtagatgaagaagtccaaatgagtgttatggatacaa 35295961  T
Q  112 aggctggtaattggaagagtggtctctttcttgaaggaatagaaattaggcctaa 166  Q
    ||| |||| |  ||||||  ||| | |||||||||||||||||| ||||||||||    
T  35295962 agggtggtcaggggaagacaggtttatttcttgaaggaatagaagttaggcctaa 35296016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 17 - 202
Target Start/End: Complemental strand, 35248427 - 35248242
Alignment:
Q  17 tgtgagaagcgatgggtggttggagattgagatgggggagttcttcagtttaggcatagaaaatgaagaagtccagatgaa---tttgttggagataaag 113  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||   |||||| |||||||   |||  ||||||| |||    
T  35248427 tgtgagaagcgatgggtggtttgagattgagatgggggagttcttcaatttaggcctagaaaat---gaagtcaagatgaatgtttttatggagatgaag 35248331  T
Q  114 gctggtaattggaagagtggtctctttcttgaaggaatagaaattaggcctaaataacacaattaagcagcatttactatactatgcaa 202  Q
    | ||||||   ||| |   |||||||  |||||||||||||| |||| ||||| ||| ||||||||||| |||| |||  |||||||||    
T  35248330 gatggtaaccagaatacacgtctcttatttgaaggaatagaagttagacctaagtaatacaattaagcaacattcactgaactatgcaa 35248242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 187
Target Start/End: Complemental strand, 45525629 - 45525454
Alignment:
Q  9 cgtcctagtgtgagaagcgatgggtggttggagattgagatgggggagttcttcagtttaggcatagaaaatgaagaagtccagatgaatttgttggaga 108  Q
    |||||| |||||||||| |||||||||||||||||||||||||| |||   |||| || |||| | |||||||||||||||||||||| | |  | ||||    
T  45525629 cgtcctggtgtgagaagtgatgggtggttggagattgagatgggagag---ttcaattcaggccttgaaaatgaagaagtccagatgagtgttatcgaga 45525533  T
Q  109 taaaggctggtaattggaagagtggtctctttcttgaaggaatagaaattaggcctaaataacacaattaagcagcatt 187  Q
    ||||||||||| |    ||| |   | |||||||||||||||||||| ||||||||||   | ||||||||||| ||||    
T  45525532 taaaggctggtgagaccaaggggaatttctttcttgaaggaatagaagttaggcctaaggtagacaattaagcaacatt 45525454  T

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Target: chr1; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 163
Target Start/End: Complemental strand, 8639056 - 8638909
Alignment:
Q  19 tgagaagcgatgggtggttggagattgagatgggggagttcttcagtttaggcatagaaaatgaagaagtccagatgaat-ttgttggagataaaggctg 117  Q
    ||||||| |||||||||||||||| ||||||||| |||||||||| || |||| ||||| ||||||||||||| |||| | ||  ||| |||||||| ||    
T  8639056 tgagaagtgatgggtggttggagactgagatgggagagttcttcaattcaggcttagaagatgaagaagtccaaatgagtattactgg-gataaaggatg 8638958  T
Q  118 g---taattggaagagtggtctctttcttgaaggaatagaaattaggcc 163  Q
    |   || ||||||||| ||| ||||| |||||||||||||| |||||||    
T  8638957 gttatacttggaagagaggtttctttgttgaaggaatagaagttaggcc 8638909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 35252230 - 35252152
Alignment:
Q  20 gagaagcgatgggtggttggagattgagatgggggagttcttcagtttaggcatagaaaatgaagaagtccagatgaat 98  Q
    |||||| ||||||||||| ||||||||||| ||||||||||||| ||||||||||||| |||||||| |||| ||||||    
T  35252230 gagaagtgatgggtggtttgagattgagattggggagttcttcaatttaggcatagaatatgaagaaatccaaatgaat 35252152  T

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Target: chr1; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 166
Target Start/End: Complemental strand, 35219231 - 35219069
Alignment:
Q  7 aacgtcctagtgtgagaagcgatgggtggttggagattgagatgggggagttcttcagtttaggcatagaaaatgaagaagtccagatgaat-ttgttgg 105  Q
    ||||||||||| ||||||| |||| ||||||||| | ||||||||| |||||||||| || |||| ||  | ||||||||||||| |||| | ||  |||    
T  35219231 aacgtcctagtatgagaagtgatgagtggttggaaactgagatgggagagttcttcatttcaggcttaccagatgaagaagtccaaatgagtattactgg 35219132  T
Q  106 agataaaggctgg---taattggaagagtggtctctttcttgaaggaatagaaattaggcctaa 166  Q
     |||||||| |||   | |||||||||| ||| ||||| |||||||||||||| ||||||||||    
T  35219131 -gataaaggatggttattattggaagagaggtttctttgttgaaggaatagaagttaggcctaa 35219069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 35208289 - 35208211
Alignment:
Q  18 gtgagaagcgatgggtggttggagattgagatgggggagttcttcagttta-ggcatagaaaatgaagaagtccagatgaat 98  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| || | ||| |||||   ||||||||||||||||||    
T  35208289 gtgagaagcgatgggtggttggagattgagattggggagttcttcaattcatggcctagaa---gaagaagtccagatgaat 35208211  T

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Target: chr1; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 35212132 - 35212077
Alignment:
Q  8 acgtcctagtgtgagaagcgatgggtggttggagattgagatgggggagttcttca 63  Q
    |||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  35212132 acgtccgagtgtgagaagtgatgggtggttggagattgagatgggagagttcttca 35212077  T

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Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 35194650 - 35194604
Alignment:
Q  17 tgtgagaagcgatgggtggttggagattgagatgggggagttcttca 63  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||    
T  35194650 tgtgagaagcgatgggtggttggagattgaaatgggggagttcttca 35194604  T

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Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 35476468 - 35476415
Alignment:
Q  8 acgtcctagtgtgagaagcgatgggtggttggagattgagatgggggagttctt 61  Q
    |||||||||||||||| | |||||||||||||||||||||||||| ||||||||    
T  35476468 acgtcctagtgtgagacgtgatgggtggttggagattgagatgggagagttctt 35476415  T

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Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 34309522 - 34309427
Alignment:
Q  1 gattggaacgtcctagtgtgagaagcgatgggtggttggagattgagatgggggagttcttcagtttaggcatagaaaatgaagaagtccagatga 96  Q
    ||||| ||||||||| ||| ||||| ||||| |||||||||||||||||||| |||||||||| || | || | ||| |||||||| |||| ||||    
T  34309522 gattgcaacgtcctaatgtaagaagtgatggatggttggagattgagatgggagagttcttcaattcaagccttgaagatgaagaaatccaaatga 34309427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 96
Target Start/End: Complemental strand, 45531708 - 45531643
Alignment:
Q  31 ggtggttggagattgagatgggggagttcttcagtttaggcatagaaaatgaagaagtccagatga 96  Q
    |||||| ||||||||||||||| |||||||||| || |||| | ||||||||||||||||| ||||    
T  45531708 ggtggtgggagattgagatgggagagttcttcaattcaggccttgaaaatgaagaagtccatatga 45531643  T

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Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 35205074 - 35205014
Alignment:
Q  9 cgtcctagtgtgagaagcgatgggtggttggagattgagatgggggagttcttcagtttag 69  Q
    ||||||| ||||||||| |||||||||||||||||||||||||| || || |||| |||||    
T  35205074 cgtcctaatgtgagaagtgatgggtggttggagattgagatgggagattttttcaatttag 35205014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 35189484 - 35189422
Alignment:
Q  1 gattggaacgtcctagtgtgagaagcgatgggtggttggagattgagatgggggagttcttca 63  Q
    ||||| || ||||| |||||||||| ||| |||||||||||||||  ||||||||||||||||    
T  35189484 gattgcaatgtccttgtgtgagaagtgataggtggttggagattggaatgggggagttcttca 35189422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 140
Target Start/End: Complemental strand, 35474156 - 35474028
Alignment:
Q  11 tcctagtgtgagaagcgatgggtggttggagattgagatgggggagttcttcagtttaggcatagaaaatgaagaagtccagatgaatttgttggagata 110  Q
    ||||||||||| || ||| || |||||||| ||||||||| | ||  |||||| ||||||| ||||| ||| |||||| ||| ||| | |  | | ||||    
T  35474156 tcctagtgtgaaaa-cgaaggatggttggacattgagatgagagatatcttcaatttaggcctagaagatggagaagttcagctgagtgttattgcgata 35474058  T
Q  111 aaggctggtaattggaagagtggtctcttt 140  Q
    |||| |||| |||||||||||||| |||||    
T  35474057 aaggatggtcattggaagagtggtttcttt 35474028  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 52
Target Start/End: Complemental strand, 23331957 - 23331914
Alignment:
Q  9 cgtcctagtgtgagaagcgatgggtggttggagattgagatggg 52  Q
    ||||||| ||||||||||||||||||||||||||||||||||||    
T  23331957 cgtcctaatgtgagaagcgatgggtggttggagattgagatggg 23331914  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 899766 - 899810
Alignment:
Q  19 tgagaagcgatgggtggttggagattgagatgggggagttcttca 63  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||    
T  899766 tgagaagcgatgggtggttggagattgagatgggagagttattca 899810  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 53924271 - 53924315
Alignment:
Q  14 tagtgtgagaagcgatgggtggttggagattgagatgggggagtt 58  Q
    |||| |||| |||||||||||||||||||||||||||||||||||    
T  53924271 tagtttgaggagcgatgggtggttggagattgagatgggggagtt 53924315  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 17664562 - 17664622
Alignment:
Q  1 gattggaacgtcctagtgtgagaagcgatgggtggttggagattgagatgggggagttctt 61  Q
    ||||| ||||||||||||| ||| | ||||| |||||||||||||||||||| || |||||    
T  17664562 gattgcaacgtcctagtgttagatgtgatggatggttggagattgagatgggagaattctt 17664622  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 19246965 - 19247025
Alignment:
Q  1 gattggaacgtcctagtgtgagaagcgatgggtggttggagattgagatgggggagttctt 61  Q
    ||||| ||||||||||||| ||| | ||||| |||||||||||||||||||| || |||||    
T  19246965 gattgcaacgtcctagtgttagatgtgatggatggttggagattgagatgggagaattctt 19247025  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 52
Target Start/End: Original strand, 33138622 - 33138665
Alignment:
Q  9 cgtcctagtgtgagaagcgatgggtggttggagattgagatggg 52  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||    
T  33138622 cgtcctactgtgagaagtgatgggtggttggagattgagatggg 33138665  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 48
Target Start/End: Original strand, 18558754 - 18558792
Alignment:
Q  10 gtcctagtgtgagaagcgatgggtggttggagattgaga 48  Q
    |||||||||||||| | ||||||||||||||||||||||    
T  18558754 gtcctagtgtgagacgtgatgggtggttggagattgaga 18558792  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 96
Target Start/End: Complemental strand, 38632050 - 38631962
Alignment:
Q  8 acgtcctagtgtgagaagcgatgggtggttggagattgagatgggggagttcttcagtttaggcatagaaaatgaagaagtccagatga 96  Q
    |||| ||||||| |||| ||||||||||||||||||| | ||||| |||||||||| || || | |  || |||||||| |||||||||    
T  38632050 acgtgctagtgtaagaaacgatgggtggttggagattcatatgggagagttcttcacttcagaccttaaagatgaagaaatccagatga 38631962  T

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