View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3470_high_60 (Length: 251)
Name: NF3470_high_60
Description: NF3470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3470_high_60 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 26370424 - 26370640
Alignment:
| Q |
1 |
tagcaagcgtacataatcaccagacatgatactaacatgtagacatcgataagaattgaagaaaacataagttactgaatgttgacacatgtgtcaatgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26370424 |
tagcaagcgtacataatcaccagacatgatactaacatgtagacatcgataagaattgaagaaaacataagttactgaatgttgacacatgtgtcaatgt |
26370523 |
T |
|
| Q |
101 |
cggacatcgacactttcggacaaagattatagaagcttacagttgagagtccaagagcttgcttttcttctcgaaaaatttcagagcagtaagcctgtta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26370524 |
cggacatcgacactttcggacaaagattatagaagcttacagttgagagtccaaaagcttgcttttcttctcgaaaaatttcagagcagtaagcctgtta |
26370623 |
T |
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| Q |
201 |
ttagaaaaggatgtgac |
217 |
Q |
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||||||||||||||||| |
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| T |
26370624 |
ttagaaaaggatgtgac |
26370640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 98 - 213
Target Start/End: Complemental strand, 2606860 - 2606744
Alignment:
| Q |
98 |
tgtcggacatcgacactt-tcggacaaagattatagaagcttacagttgagagtccaagagcttgcttttcttctcgaaaaatttcagagcagtaagcct |
196 |
Q |
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|||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2606860 |
tgtcggacatcgacacttgtcggagaaagattacagaagcttacagttgagagtccaagagcttgcttttcttctcgaaaaatttcagagcagtatgcct |
2606761 |
T |
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| Q |
197 |
gttattagaaaaggatg |
213 |
Q |
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| T |
2606760 |
gttattagaaaaggatg |
2606744 |
T |
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