View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3470_high_62 (Length: 250)
Name: NF3470_high_62
Description: NF3470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3470_high_62 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 130 - 250
Target Start/End: Complemental strand, 16891270 - 16891151
Alignment:
| Q |
130 |
cattcacaactttaaaaatacacataaacaaatcacaagagccgtataaagacaaatcacaattggggcaattcaaaccaatccatgcatccaacgatgc |
229 |
Q |
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|||||||||||| ||||||||||||||||||||||| | ||||||||||||||||| ||||| | ||| |||||||||||||| |||||||||||| |
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| T |
16891270 |
cattcacaacttaaaaaatacacataaacaaatcaccacagccgtataaagacaaaccacaaagaagacaa-ccaaaccaatccatggatccaacgatgc |
16891172 |
T |
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| Q |
230 |
aaaatgaagggaaataaaaaa |
250 |
Q |
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||||||||||||||||||||| |
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| T |
16891171 |
aaaatgaagggaaataaaaaa |
16891151 |
T |
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