View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3470_high_69 (Length: 242)
Name: NF3470_high_69
Description: NF3470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3470_high_69 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 156 - 242
Target Start/End: Original strand, 4635314 - 4635400
Alignment:
| Q |
156 |
caatatttgtcggaacatgcatgataaaaaatatgaatatactcaacaaagtatgtgcagaaaagagacagagggagtactatgtac |
242 |
Q |
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| T |
4635314 |
caatatttgtcggaacatgcatgataaaaaatatgaatatactcaacaaagtatgtgcagaaaagagacagagggagtactatgtac |
4635400 |
T |
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Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 7 - 65
Target Start/End: Original strand, 4635165 - 4635223
Alignment:
| Q |
7 |
agagatggatgatcacaacggccgtgaggaacgttgggttaggtgtggttgacgacaag |
65 |
Q |
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| T |
4635165 |
agagatggatgatcacaacggccgtgaggaacgttgggttaggtgtggttgaagacaag |
4635223 |
T |
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