View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3470_high_76 (Length: 238)

Name: NF3470_high_76
Description: NF3470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3470_high_76
NF3470_high_76
[»] chr8 (5 HSPs)
chr8 (19-238)||(26370065-26370284)
chr8 (158-238)||(16589008-16589088)
chr8 (158-238)||(16528863-16528943)
chr8 (161-222)||(16520248-16520309)
chr8 (158-236)||(16570285-16570363)
[»] chr3 (3 HSPs)
chr3 (80-238)||(2606934-2607088)
chr3 (161-219)||(39161274-39161332)
chr3 (160-192)||(2621528-2621560)


Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 26370065 - 26370284
Alignment:
Q  19 ttctaagccttataagtttcaatccttgatcatgacatatatagttaaggtacagtattactcatgccactatcctatgtctacaatctaaggctattct 118  Q
    |||||||| ||||||||||||||  ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||    
T  26370065 ttctaagctttataagtttcaatttttgatcatgacatatatagttaaggtatagtattactcatgccactttcctatgtccacaatctaaggctattct 26370164  T
Q  119 caggatctattttcattacaaaaggaaaaagaataaagaagtacctgagccaaataacctcccaaagctggtccaattattaaacctatgccccaagctg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26370165 caggatctattttcattacaaaaggaaaaagaataaagaagtacctgagccaaataacctcccaaagctggtccaattattaaacctatgccccaagctg 26370264  T
Q  219 cactcaactgaaatcatatc 238  Q
    ||||||||||||||||||||    
T  26370265 cactcaactgaaatcatatc 26370284  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 158 - 238
Target Start/End: Original strand, 16589008 - 16589088
Alignment:
Q  158 agtacctgagccaaataacctcccaaagctggtccaattattaaacctatgccccaagctgcactcaactgaaatcatatc 238  Q
    ||||||||||||||||| ||||| |  ||||| ||||  |||||||||||||||||||||||||| | |||||||||||||    
T  16589008 agtacctgagccaaatagcctcctattgctgggccaacaattaaacctatgccccaagctgcactaacctgaaatcatatc 16589088  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 158 - 238
Target Start/End: Original strand, 16528863 - 16528943
Alignment:
Q  158 agtacctgagccaaataacctcccaaagctggtccaattattaaacctatgccccaagctgcactcaactgaaatcatatc 238  Q
    ||||||||||||||||| ||||| |  || || ||||| |||||||||| ||||||||||||||| | |||||||||||||    
T  16528863 agtacctgagccaaatagcctcctattgccgggccaataattaaacctacgccccaagctgcactaacctgaaatcatatc 16528943  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 161 - 222
Target Start/End: Original strand, 16520248 - 16520309
Alignment:
Q  161 acctgagccaaataacctcccaaagctggtccaattattaaacctatgccccaagctgcact 222  Q
    |||||||||||||| |||||||| ||||||||||| ||||||||| | |||||||| |||||    
T  16520248 acctgagccaaatagcctcccaatgctggtccaatgattaaacctgttccccaagccgcact 16520309  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 236
Target Start/End: Original strand, 16570285 - 16570363
Alignment:
Q  158 agtacctgagccaaataacctcccaaagctggtccaattattaaacctatgccccaagctgcactcaactgaaatcata 236  Q
    ||||||||||||||||| ||||| |  ||||| ||||  ||||| ||||  |||||||||||||| | |||||||||||    
T  16570285 agtacctgagccaaatagcctcctattgctgggccaacaattaagcctacaccccaagctgcactaacctgaaatcata 16570363  T

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Target: chr3 (Bit Score: 89; Significance: 5e-43; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 80 - 238
Target Start/End: Complemental strand, 2607088 - 2606934
Alignment:
Q  80 tcatgccactatcctatgtctacaatctaaggctattctcaggatctattttcattacaaaaggaaaaagaataaagaagtacctgagccaaataacctc 179  Q
    |||||||| | | ||||||| | |||||||| ||||||||| ||  ||||||||||||||||||||||| ||||    ||||||||||||||||||||||    
T  2607088 tcatgccatttttctatgtccaaaatctaagactattctcaagacatattttcattacaaaaggaaaaa-aata---gagtacctgagccaaataacctc 2606993  T
Q  180 ccaaagctggtccaattattaaacctatgccccaagctgcactcaactgaaatcatatc 238  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  2606992 ccaaagctggtccaattattaaacctatgccccaagctgcactgaactgaaatcgtatc 2606934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 219
Target Start/End: Complemental strand, 39161332 - 39161274
Alignment:
Q  161 acctgagccaaataacctcccaaagctggtccaattattaaacctatgccccaagctgc 219  Q
    |||||||||||||||||||| || ||||| ||||| | ||||||||  |||||||||||    
T  39161332 acctgagccaaataacctcctaatgctggaccaatgactaaacctactccccaagctgc 39161274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 192
Target Start/End: Complemental strand, 2621560 - 2621528
Alignment:
Q  160 tacctgagccaaataacctcccaaagctggtcc 192  Q
    |||||||||||||||||||||||| ||||||||    
T  2621560 tacctgagccaaataacctcccaacgctggtcc 2621528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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