View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3470_high_8 (Length: 584)
Name: NF3470_high_8
Description: NF3470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3470_high_8 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 543; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 11 - 584
Target Start/End: Original strand, 47306951 - 47307522
Alignment:
| Q |
11 |
cagagagcaaagaggtctaattatgtcagctttgacccctggagctattgtattgtctaaggatatcaatggtcatcgtgtggttttcaattgtttgaaa |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47306951 |
cagagagcaaagaggtctaattatgtcagctttgacccctggagctattgtattgtctaaggatatcaatggtcatcgtgtggttttcaattgtttgaaa |
47307050 |
T |
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| Q |
111 |
aatttcccacatgctgatactgaggtattcatatacactttcaattgttgttaaactagagagacactttaagttcaaattgtggatccttttacaaaca |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47307051 |
aatttcccacatgctgatactgaggtattcatatacactttcaattgttgttaaactagagagacactttaagttcaaattgtggatccttttacaaaca |
47307150 |
T |
|
| Q |
211 |
aaacaatctatttacatgtaatttaaggcagtttcctcataaattgactaagattttgtcggggttcgggttaaggtcttagattgaggttgtgtttcac |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
47307151 |
aaacaatctatttacatgtaatttaaggcagtttcctcataaattgactaagattttgtcggggttcgggttaaggtcttaaattgaggttgtgtttcac |
47307250 |
T |
|
| Q |
311 |
aatcccggatattaagcaggattgcagtgtttaaatgcaactgctggcactgtgcagattgtgggtttatatgtttttctgagaccctctaggaatcatg |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
47307251 |
aatcccggatattaagcaggattgcagtgtttaaatgcaactgctggcac--tgcagattgtggctttatatgtttttctgagaccctctaggaatcatg |
47307348 |
T |
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| Q |
411 |
ccatgctacactatgaaaactaattcttgttatcatatttaactgtacactttgttttaagtattcctttctttatccacattttttagagtaaaggaat |
510 |
Q |
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| T |
47307349 |
ccatgctacactatgaaaactaattcttgttatcatatttaactgtacactttgttttaagtattcctttctttatccacattttttagagtaaatgaat |
47307448 |
T |
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| Q |
511 |
agcggtatgtttgctcttgtttggattagcacttcagcatttatacaattatttgttatctctttgcctaagtt |
584 |
Q |
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||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
47307449 |
agcggtatgtttgctcttgtttggactagcacttcagcatatatacaattatttgttatctctttgcctaagtt |
47307522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 116; Significance: 1e-58; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 11 - 134
Target Start/End: Original strand, 23694887 - 23695010
Alignment:
| Q |
11 |
cagagagcaaagaggtctaattatgtcagctttgacccctggagctattgtattgtctaaggatatcaatggtcatcgtgtggttttcaattgtttgaaa |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |
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| T |
23694887 |
cagagagcaaagaggtctaattatgtcagctttgacccctggagctattgtattgtctaatgatttcaatggtcatcgtgtggttttcaattgtttgaaa |
23694986 |
T |
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| Q |
111 |
aatttcccacatgctgatactgag |
134 |
Q |
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|||||||||||||||||||||||| |
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| T |
23694987 |
aatttcccacatgctgatactgag |
23695010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 116; Significance: 1e-58; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 11 - 134
Target Start/End: Original strand, 20513162 - 20513285
Alignment:
| Q |
11 |
cagagagcaaagaggtctaattatgtcagctttgacccctggagctattgtattgtctaaggatatcaatggtcatcgtgtggttttcaattgtttgaaa |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |
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| T |
20513162 |
cagagagcaaagaggtctaattatgtcagctttgacccctggagctattgtattgtctaaagatgtcaatggtcatcgtgtggttttcaattgtttgaaa |
20513261 |
T |
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| Q |
111 |
aatttcccacatgctgatactgag |
134 |
Q |
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|||||||||||||||||||||||| |
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| T |
20513262 |
aatttcccacatgctgatactgag |
20513285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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