View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3470_high_80 (Length: 236)
Name: NF3470_high_80
Description: NF3470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3470_high_80 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 53882319 - 53882098
Alignment:
| Q |
1 |
aagattatgaaagtagtgtgcgctgttgtgttgtaaccttgttttctatttctaaagtagttttatgcccataaatcgtcagtagaaattatttgtatac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53882319 |
aagattatgaaagtagtgtgcgctgttgtgttgtaaccttgttttctatttctaaagtagttttatgcccataaatcgtcagtagaaattatttgtatac |
53882220 |
T |
|
| Q |
101 |
tattatggagatttaaacgataccatctactgcctcttgcacgatgcaacggcctctacgactagctagagacaatgcctgatcttgtgcatgcttgcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
53882219 |
tattatggagatttaaacgataccatctactgcctcttgcacgatgcaacggcctctacgactagctagagacaatgcctgatcttgtgcatgcttacaa |
53882120 |
T |
|
| Q |
201 |
catttttaattgaagttggatg |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
53882119 |
catttttaattgaagttggatg |
53882098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 53888433 - 53888212
Alignment:
| Q |
1 |
aagattatgaaagtagtgtgcgctgttgtgttgtaaccttgttttctatttctaaagtagttttatgcccataaatcgtcagtagaaattatttgtatac |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53888433 |
aagattatgaaagtagtgtgcgctgttgtgttgtaaccttgttttctatttctaaagtagttttatgcccataaatcgtcagtagaaattatttgtatac |
53888334 |
T |
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| Q |
101 |
tattatggagatttaaacgataccatctactgcctcttgcacgatgcaacggcctctacgactagctagagacaatgcctgatcttgtgcatgcttgcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
53888333 |
tattatggagatttaaacgataccatctactgcctcttgcacgatgcaacggcctctacgactagctagagacaatgcctgatcttgtgcatgcttacaa |
53888234 |
T |
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| Q |
201 |
catttttaattgaagttggatg |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
53888233 |
catttttaattgaagttggatg |
53888212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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