View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3470_high_83 (Length: 222)
Name: NF3470_high_83
Description: NF3470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3470_high_83 |
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Alignment Details
Target: chr8 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 3790730 - 3790918
Alignment:
| Q |
19 |
gaaggtgctgctgaagctgaacttgatttagatctaaacaaaatgcccaacgtgaatgttgaaaatgagattgaagaggagttggcaaaccatgacaatg |
118 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
3790730 |
gaaggtgctgctgaagctgaacttgatttagatctaaacaaaatgcccaacgtgaatgttgaaaatgagattgaagaggagttggcaaacc------atg |
3790823 |
T |
|
| Q |
119 |
aagaggatgaggttcagaaaaatgaagagttaaagaaatgggttcatgatatgctgaagatttatatagctgggtttccatgatattcttcgaca |
213 |
Q |
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|| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
3790824 |
aaaaggatgaggttcagaaaaatgaaaagttaaagaaatgggttcatgatatgctgaagatttatatagctgggtttccatgattttgttcgaca |
3790918 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 12811167 - 12811355
Alignment:
| Q |
19 |
gaaggtgctgctgaagctgaacttgatttagatctaaacaaaatgcccaacgtgaatgttgaaaatgagattgaagaggagttggcaaaccatgacaatg |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
12811167 |
gaaggtgctgctgaagctgaacttgatttagatctaaacaaaatgcccaacgtgaatgttgaaaatgagattgaagaggagttggcaaacc------atg |
12811260 |
T |
|
| Q |
119 |
aagaggatgaggttcagaaaaatgaagagttaaagaaatgggttcatgatatgctgaagatttatatagctgggtttccatgatattcttcgaca |
213 |
Q |
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|| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
12811261 |
aaaaggatgaggttcagaaaaatgaaaagttaaagaaatgggttcatgatatgctgaagatttatatagctgggtttccatgattttgttcgaca |
12811355 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 156; Significance: 5e-83; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 19 - 213
Target Start/End: Complemental strand, 1655224 - 1655036
Alignment:
| Q |
19 |
gaaggtgctgctgaagctgaacttgatttagatctaaacaaaatgcccaacgtgaatgttgaaaatgagattgaagaggagttggcaaaccatgacaatg |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
1655224 |
gaaggtgctgctgaagctgaacttgatttagatctaaacaaaatgcccaacgtgaatgttgaaaatgagattgaagaggagttggcaaacc------atg |
1655131 |
T |
|
| Q |
119 |
aagaggatgaggttcagaaaaatgaagagttaaagaaatgggttcatgatatgctgaagatttatatagctgggtttccatgatattcttcgaca |
213 |
Q |
| |
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|| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
1655130 |
aaaaggatgaggttcagaaaaatgaaaagttaaagaaatgggttcatgatatgctgaagatttatatagctgggtttccatgattttgttcgaca |
1655036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 19 - 213
Target Start/End: Complemental strand, 37152881 - 37152693
Alignment:
| Q |
19 |
gaaggtgctgctgaagctgaacttgatttagatctaaacaaaatgcccaacgtgaatgttgaaaatgagattgaagaggagttggcaaaccatgacaatg |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
37152881 |
gaaggtgctgctgaagctgaacttgatttagatctaaacaaaatgcccaacgtgaatgttgaaaatgagattgaagaggagttggcaaacc------atg |
37152788 |
T |
|
| Q |
119 |
aagaggatgaggttcagaaaaatgaagagttaaagaaatgggttcatgatatgctgaagatttatatagctgggtttccatgatattcttcgaca |
213 |
Q |
| |
|
|| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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|
| T |
37152787 |
aaaaggatgaggttcagaaaaatgaaaagttaaagaaatgggttcatgatatgctgaagatttatatagctgggtttccatgattttgttcgaca |
37152693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 19 - 213
Target Start/End: Complemental strand, 45223198 - 45223010
Alignment:
| Q |
19 |
gaaggtgctgctgaagctgaacttgatttagatctaaacaaaatgcccaacgtgaatgttgaaaatgagattgaagaggagttggcaaaccatgacaatg |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
45223198 |
gaaggtgctgctgaagctgaacttgatttagatctaaacaaaatgcccaacgtgaatgttgaaaatgagattgaagaggagttggcaaacc------atg |
45223105 |
T |
|
| Q |
119 |
aagaggatgaggttcagaaaaatgaagagttaaagaaatgggttcatgatatgctgaagatttatatagctgggtttccatgatattcttcgaca |
213 |
Q |
| |
|
|| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
45223104 |
aaaaggatgaggttcagaaaaatgaaaagttaaagaaatgggttcatgatatgctgaagatttatatagctgggtttccatgattttgttcgaca |
45223010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 9128978 - 9129166
Alignment:
| Q |
19 |
gaaggtgctgctgaagctgaacttgatttagatctaaacaaaatgcccaacgtgaatgttgaaaatgagattgaagaggagttggcaaaccatgacaatg |
118 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
9128978 |
gaaggtgctgctgaagctgaacttaatttagatctaaacaaaatgcccaacgtgaatgttgaaaatgagattgaagaggagttggcaaacc------atg |
9129071 |
T |
|
| Q |
119 |
aagaggatgaggttcagaaaaatgaagagttaaagaaatgggttcatgatatgctgaagatttatatagctgggtttccatgatattcttcgaca |
213 |
Q |
| |
|
|| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
9129072 |
aaaaggatgaggttcagaaaaatgaaaagttaaagaaatgggttcatgatatgctgaagatttatatagctgggtttccatgattttgttcgaca |
9129166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 82 - 176
Target Start/End: Complemental strand, 26650930 - 26650836
Alignment:
| Q |
82 |
aatgagattgaagaggagttggcaaaccatgacaatgaagaggatgaggttcagaaaaatgaagagttaaagaaatgggttcatgatatgctgaa |
176 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | | |||| ||||||||||||||||||||| || || ||||||||||||| |
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| T |
26650930 |
aatgagattgaagaggagttggcaaaccatgacaatgaagaggaggggattcataaaaatgaagagttaaagaaagggattgatgatatgctgaa |
26650836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 49 - 119
Target Start/End: Complemental strand, 26651002 - 26650926
Alignment:
| Q |
49 |
gatctaaacaaaatgcccaacg------tgaatgttgaaaatgagattgaagaggagttggcaaaccatgacaatga |
119 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
26651002 |
gatctaaacaaattgcccaacgacatgctgaatgttgaaaatgagattgaagaggaggtggcaaaccatgacaatga |
26650926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 19 - 213
Target Start/End: Complemental strand, 23781152 - 23780964
Alignment:
| Q |
19 |
gaaggtgctgctgaagctgaacttgatttagatctaaacaaaatgcccaacgtgaatgttgaaaatgagattgaagaggagttggcaaaccatgacaatg |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
23781152 |
gaaggtgctgctgaagctgaacttgatttagatctaaacaaaatgcccaacgtgaatgttgaaaatgagattgaagaggagttggcaaacc------atg |
23781059 |
T |
|
| Q |
119 |
aagaggatgaggttcagaaaaatgaagagttaaagaaatgggttcatgatatgctgaagatttatatagctgggtttccatgatattcttcgaca |
213 |
Q |
| |
|
|| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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|
| T |
23781058 |
aaaaggatgaggttcagaaaaatgaaaagttaaagaaatgggttcatgatatgctgaagatttatatagctgggtttccatgattttgttcgaca |
23780964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 52635791 - 52635979
Alignment:
| Q |
19 |
gaaggtgctgctgaagctgaacttgatttagatctaaacaaaatgcccaacgtgaatgttgaaaatgagattgaagaggagttggcaaaccatgacaatg |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
52635791 |
gaaggtgctgctgaagctgaacttgatttagatctaaacaaaatgcccaacgtgaatgttgaaaatgagattgaagaggagttggcaaacc------atg |
52635884 |
T |
|
| Q |
119 |
aagaggatgaggttcagaaaaatgaagagttaaagaaatgggttcatgatatgctgaagatttatatagctgggtttccatgatattcttcgaca |
213 |
Q |
| |
|
|| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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|
| T |
52635885 |
aaaaggatgaggttcagaaaaatgaaaagttaaagaaatgggttcatgatatgctgaagatttatatagctgggtttccatgattttgttcgaca |
52635979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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