View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3470_low_1 (Length: 1137)

Name: NF3470_low_1
Description: NF3470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3470_low_1
NF3470_low_1
[»] chr2 (24 HSPs)
chr2 (13-643)||(44741470-44742107)
chr2 (842-1137)||(44740051-44740334)
chr2 (701-800)||(44740381-44740480)
chr2 (264-392)||(27898639-27898766)
chr2 (254-316)||(27301217-27301279)
chr2 (254-307)||(11377394-11377447)
chr2 (253-329)||(13194197-13194273)
chr2 (498-566)||(19936603-19936671)
chr2 (498-566)||(20420891-20420959)
chr2 (498-550)||(44086064-44086116)
chr2 (512-566)||(11376432-11376486)
chr2 (254-360)||(41166450-41166556)
chr2 (259-316)||(5862383-5862440)
chr2 (391-468)||(13194365-13194442)
chr2 (423-476)||(17763188-17763241)
chr2 (253-302)||(30514681-30514729)
chr2 (256-314)||(44085785-44085845)
chr2 (254-314)||(1331289-1331349)
chr2 (498-566)||(9811853-9811921)
chr2 (258-313)||(11051135-11051191)
chr2 (498-566)||(16579103-16579171)
chr2 (260-316)||(31719804-31719860)
chr2 (498-566)||(36412839-36412907)
chr2 (253-316)||(30759358-30759421)
[»] scaffold0204 (4 HSPs)
scaffold0204 (258-392)||(26165-26298)
scaffold0204 (506-566)||(15102-15162)
scaffold0204 (391-546)||(26323-26483)
scaffold0204 (256-314)||(14822-14879)
[»] chr4 (34 HSPs)
chr4 (258-392)||(48338643-48338776)
chr4 (391-472)||(3999217-3999298)
chr4 (498-566)||(51395356-51395424)
chr4 (256-359)||(18536342-18536445)
chr4 (391-566)||(18881491-18881673)
chr4 (253-360)||(46471721-46471828)
chr4 (254-316)||(45226668-45226730)
chr4 (254-359)||(5122063-5122168)
chr4 (149-224)||(5122195-5122270)
chr4 (254-329)||(49641128-49641203)
chr4 (254-359)||(3666751-3666856)
chr4 (258-374)||(32222982-32223095)
chr4 (391-472)||(45983794-45983875)
chr4 (498-566)||(31301926-31301994)
chr4 (498-566)||(32137232-32137300)
chr4 (258-313)||(35014574-35014629)
chr4 (253-315)||(1920304-1920365)
chr4 (498-552)||(6333849-6333903)
chr4 (184-229)||(7784351-7784396)
chr4 (395-566)||(20986866-20987043)
chr4 (258-315)||(25686187-25686243)
chr4 (500-565)||(40806297-40806362)
chr4 (498-566)||(10219210-10219278)
chr4 (498-566)||(29643249-29643317)
chr4 (258-314)||(36106198-36106254)
chr4 (498-566)||(42558196-42558264)
chr4 (391-546)||(48338801-48338961)
chr4 (254-314)||(48602237-48602297)
chr4 (498-566)||(50570500-50570568)
chr4 (259-329)||(21069357-21069427)
chr4 (253-303)||(48293165-48293215)
chr4 (395-468)||(8485145-8485218)
chr4 (253-314)||(14867061-14867122)
chr4 (391-468)||(41260572-41260649)
[»] chr3 (31 HSPs)
chr3 (13-134)||(26373552-26373673)
chr3 (259-345)||(54122623-54122709)
chr3 (258-387)||(2832040-2832168)
chr3 (391-468)||(42362762-42362839)
chr3 (498-566)||(21586330-21586398)
chr3 (254-313)||(4280583-4280642)
chr3 (258-312)||(4669031-4669085)
chr3 (254-359)||(44651258-44651363)
chr3 (498-566)||(6003871-6003939)
chr3 (253-313)||(20846769-20846829)
chr3 (498-566)||(39098445-39098513)
chr3 (498-566)||(48169243-48169311)
chr3 (254-313)||(5640455-5640514)
chr3 (254-313)||(10481345-10481404)
chr3 (254-345)||(22472760-22472851)
chr3 (254-313)||(44662232-44662291)
chr3 (391-450)||(51660562-51660621)
chr3 (391-472)||(38651579-38651660)
chr3 (254-327)||(42362931-42363004)
chr3 (498-566)||(4669135-4669203)
chr3 (391-455)||(20038932-20038996)
chr3 (498-566)||(33361426-33361494)
chr3 (259-355)||(48168973-48169069)
chr3 (498-566)||(51149210-51149278)
chr3 (254-313)||(36330403-36330462)
chr3 (259-313)||(25918980-25919034)
chr3 (260-305)||(8355630-8355675)
chr3 (399-468)||(10481157-10481226)
chr3 (168-229)||(27054292-27054352)
chr3 (264-329)||(37045617-37045680)
chr3 (391-464)||(51661919-51661992)
[»] chr5 (30 HSPs)
chr5 (254-314)||(25715546-25715606)
chr5 (253-359)||(6633598-6633704)
chr5 (254-392)||(22553653-22553790)
chr5 (255-313)||(31075349-31075407)
chr5 (393-472)||(691149-691228)
chr5 (254-329)||(12378794-12378869)
chr5 (253-316)||(40109344-40109407)
chr5 (254-313)||(40331210-40331269)
chr5 (253-314)||(14652753-14652814)
chr5 (391-464)||(18432552-18432625)
chr5 (254-314)||(7591206-7591266)
chr5 (498-566)||(11917918-11917986)
chr5 (498-566)||(12680553-12680621)
chr5 (498-566)||(32520703-32520771)
chr5 (498-566)||(42545918-42545986)
chr5 (254-316)||(18432385-18432447)
chr5 (253-303)||(27571796-27571846)
chr5 (253-359)||(39052851-39052957)
chr5 (255-316)||(2589300-2589361)
chr5 (513-566)||(17084364-17084417)
chr5 (391-464)||(33901547-33901620)
chr5 (498-566)||(2226361-2226429)
chr5 (498-566)||(9161518-9161586)
chr5 (506-566)||(10174599-10174659)
chr5 (498-566)||(30002461-30002529)
chr5 (258-314)||(35727272-35727328)
chr5 (498-566)||(36176367-36176435)
chr5 (253-312)||(7487045-7487104)
chr5 (254-316)||(11402893-11402956)
chr5 (478-565)||(14653000-14653087)
[»] chr6 (9 HSPs)
chr6 (253-359)||(892025-892131)
chr6 (254-359)||(32190365-32190470)
chr6 (254-359)||(28633239-28633344)
chr6 (254-313)||(19134832-19134891)
chr6 (498-566)||(35039416-35039484)
chr6 (254-329)||(14564720-14564795)
chr6 (254-359)||(12108261-12108367)
chr6 (253-313)||(13532003-13532063)
chr6 (256-309)||(30752868-30752921)
[»] chr1 (29 HSPs)
chr1 (254-392)||(9330694-9330831)
chr1 (258-360)||(44056033-44056135)
chr1 (255-359)||(36203131-36203235)
chr1 (254-329)||(8165255-8165330)
chr1 (498-566)||(33910254-33910322)
chr1 (254-329)||(10847239-10847314)
chr1 (254-345)||(17652041-17652132)
chr1 (253-303)||(9961923-9961973)
chr1 (254-359)||(9249772-9249877)
chr1 (253-314)||(17989339-17989400)
chr1 (253-298)||(29923053-29923098)
chr1 (259-316)||(34914432-34914489)
chr1 (261-314)||(36782099-36782152)
chr1 (148-213)||(39158132-39158197)
chr1 (498-566)||(5154885-5154953)
chr1 (498-566)||(8211743-8211811)
chr1 (498-566)||(11072810-11072878)
chr1 (254-314)||(11073097-11073157)
chr1 (253-345)||(35979970-35980062)
chr1 (254-314)||(35992324-35992384)
chr1 (425-473)||(52829285-52829333)
chr1 (254-313)||(32910098-32910157)
chr1 (254-364)||(23474780-23474888)
chr1 (255-313)||(41751516-41751574)
chr1 (258-307)||(25865748-25865797)
chr1 (391-468)||(36202991-36203068)
chr1 (391-472)||(39157848-39157929)
chr1 (391-472)||(44056196-44056277)
chr1 (393-450)||(45949096-45949153)
[»] chr7 (29 HSPs)
chr7 (253-358)||(30855390-30855495)
chr7 (391-566)||(31011204-31011380)
chr7 (498-566)||(36509169-36509237)
chr7 (258-329)||(40849156-40849227)
chr7 (258-359)||(524550-524651)
chr7 (254-307)||(2734632-2734685)
chr7 (263-316)||(27456631-27456684)
chr7 (391-468)||(40849321-40849398)
chr7 (498-566)||(36921034-36921102)
chr7 (498-566)||(42910159-42910227)
chr7 (498-566)||(43429705-43429773)
chr7 (498-566)||(45898033-45898101)
chr7 (254-313)||(6879825-6879884)
chr7 (254-289)||(7528951-7528986)
chr7 (256-315)||(17493116-17493174)
chr7 (256-315)||(17560040-17560098)
chr7 (260-359)||(43202716-43202815)
chr7 (391-465)||(524414-524488)
chr7 (498-564)||(13852843-13852909)
chr7 (506-564)||(37376338-37376396)
chr7 (253-314)||(23032976-23033036)
chr7 (498-566)||(8768208-8768276)
chr7 (498-566)||(11205920-11205988)
chr7 (256-316)||(11399420-11399479)
chr7 (498-566)||(22366977-22367045)
chr7 (498-566)||(47204009-47204077)
chr7 (254-329)||(46147506-46147581)
chr7 (499-561)||(22700794-22700856)
chr7 (253-303)||(23675672-23675722)
[»] chr8 (17 HSPs)
chr8 (258-396)||(28441769-28441906)
chr8 (260-312)||(15452395-15452447)
chr8 (257-316)||(14185596-14185655)
chr8 (254-360)||(40436733-40436839)
chr8 (498-552)||(44673261-44673315)
chr8 (498-566)||(27675088-27675156)
chr8 (256-316)||(41346208-41346268)
chr8 (254-312)||(28801866-28801924)
chr8 (513-566)||(3682465-3682518)
chr8 (506-567)||(10661682-10661743)
chr8 (254-359)||(27674815-27674920)
chr8 (498-566)||(14549760-14549828)
chr8 (496-566)||(3006115-3006185)
chr8 (267-329)||(3129361-3129423)
chr8 (390-472)||(12659809-12659891)
chr8 (254-299)||(9012577-9012622)
chr8 (513-566)||(42496388-42496441)
[»] scaffold0042 (1 HSPs)
scaffold0042 (13-134)||(30934-31055)
[»] scaffold0664 (1 HSPs)
scaffold0664 (253-314)||(6276-6337)
[»] scaffold0688 (1 HSPs)
scaffold0688 (391-453)||(1641-1703)
[»] scaffold0001 (1 HSPs)
scaffold0001 (253-359)||(427940-428046)


Alignment Details
Target: chr2 (Bit Score: 434; Significance: 0; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 13 - 643
Target Start/End: Complemental strand, 44742107 - 44741470
Alignment:
Q  13 agcacagaccaccaacacaaacggttccaaacgcgcttgaattctgatcaagggatga-tccaacacacgttagtaaccaaacagcccttacgggttaaa 111  Q
    ||||| ||||||||||||||||||||||| |||||||||||  | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  44742107 agcacggaccaccaacacaaacggttccagacgcgcttgaacccagatcaagggatgagtccaacacacgttagtaaccaaacagcccttacgggttaaa 44742008  T
Q  112 aagaaccataccctttggggtttttaaatttacttccaacattacattttcattgacatccaacgatgttcacaacaatataaaccaaattaaaaacatg 211  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44742007 a-gaaccataccctttggggtttttaaatttacttccaacattacattttcattgacatccaacgatgttcacaacaatataaaccaaattaaaaacatg 44741909  T
Q  212 gacataaagtaatcatatcctatnnnnnnnnnnnnnnnnnnttaagattttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaa 311  Q
    |||||||||||||||||||||||                   ||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||    
T  44741908 gacataaagtaatcatatcctataaaaaatgcaaaaaaac--taagattttatcattctctaaaaattcaagtagcacgtagatacatttattaaataaa 44741811  T
Q  312 aagcacataaggaacttatccgtagaaaaaa-tatataattttataaaaagtttagattgagttattatgagaattgatctatgttgcggtttggtttgg 410  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  44741810 aagcacataaggaacttatccgtagaaaaaaatatatcattttataaaaagtttagattgagttattatgagaattgatatatgttgcagtttggtttgg 44741711  T
Q  411 tttaattatgttgttaaaataacaaccgcaaatcaaaccaaactacgcggttgagtaagaaattaaatacatctgaattaaatatgatttttgcagtttc 510  Q
    |||||||  ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  44741710 tttaattcggttgttaaaataacaactgcaaatcaaaccaaactacgcggttgagtaagaaattaaatacatctgaactaaatatgatatttgcagtttc 44741611  T
Q  511 agtttgaattagtttgatttacggtt--------tttctattgggttggtccagttttgaacacagtcagttataatggtatatgttatgaacacattaa 602  Q
    |||||||||||||||  |||||| ||        ||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||    
T  44741610 agtttgaattagtttagtttacgattttttgcagtttctattgggttggtccagttttgaacacagtgagttataatagtaaatgttatgaacacattaa 44741511  T
Q  603 acaaaaattaaatgaaccgctcatatttaatgtaaccctcc 643  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  44741510 acaaaaattaaatgaaccgctcatgtttaatgtaaccctcc 44741470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 842 - 1137
Target Start/End: Complemental strand, 44740334 - 44740051
Alignment:
Q  842 aaaatcggataaatcacattgcaatagaaacgatttaactgcaaaaataactatatatcagacactacaaatgaaacttattttcatcttatttcctaaa 941  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  44740334 aaaatcggataaatcacattgcaatagaaacaatttaactgcaaaaataactatatatcagacactacaaatgaaacttattttcatcttattt------ 44740241  T
Q  942 attatttaattatgatatatgttnnnnnnnttataattagatacaattaaatatatatacattaatatgcccattttttcactagtaacgaagaaaagag 1041  Q
           ||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44740240 -------aattatgatatatgttaaaaaaattataattagatacaattaaatatatatacattaatatgcccattttttcactagtaacgaagaaaagag 44740148  T
Q  1042 ttgtgtcgaattttggaa-aaaacatgtgccccgtgaaaattgttttaatctattggcgagccaatgagctatatcatcatttattttttccctttc 1137  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44740147 ttgtgtcgaattttggaaaaaaacatgtgccccgtgaaaattgttttaatctattggcgagccaatgagctatatcatcatttattttttccctttc 44740051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 96; E-Value: 2e-46
Query Start/End: Original strand, 701 - 800
Target Start/End: Complemental strand, 44740480 - 44740381
Alignment:
Q  701 ccctcctttaatacaaatttacttcttttatcgtttttattttaaaattaaaatactcatacataatatcatatccaaacccattttcaaggataaatga 800  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  44740480 ccctcctttaatacaaatttacttcttttatcgtttttattttaaaattaaaatactcatacataatatcatatccaaaccccttttcaaggataaatga 44740381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 264 - 392
Target Start/End: Original strand, 27898639 - 27898766
Alignment:
Q  264 tcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaagcacataaggaacttatc-cgtagaaaaaatatataattttataaaaagt 362  Q
    |||||||||||||||||||||| |||||| |||| |||||||||| ||||||| | |||||||||| | ||   ||||||||| ||||||||| ||||||    
T  27898639 tcattctctaaaagttcaagtagcacgtaaatacgttttttaaat-aaaagcaaagaaggaacttaacacgagaaaaaaatatgtaattttat-aaaagt 27898736  T
Q  363 ttagattgagttattatgagaattgatcta 392  Q
    ||  ||||||||  |||||| |||||||||    
T  27898737 tttcattgagtttctatgagtattgatcta 27898766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 254 - 316
Target Start/End: Complemental strand, 27301279 - 27301217
Alignment:
Q  254 taagattttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaagca 316  Q
    |||||||||| ||||||||||||||||||||| ||| ||| ||||||||| ||||||||||||    
T  27301279 taagattttaacattctctaaaagttcaagtagcacatagctacatttttgaaataaaaagca 27301217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 254 - 307
Target Start/End: Complemental strand, 11377447 - 11377394
Alignment:
Q  254 taagattttatcattctctaaaagttcaagtaacacgtagatacattttttaaa 307  Q
    ||||||||||||||||||||||||||||| || ||| || ||||||||||||||    
T  11377447 taagattttatcattctctaaaagttcaaatagcacataaatacattttttaaa 11377394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 253 - 329
Target Start/End: Original strand, 13194197 - 13194273
Alignment:
Q  253 ttaagattttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaagcacataaggaactta 329  Q
    ||||||||||||||||||||||||||| || || ||| || ||| |||||| |||||||||||| | ||| ||||||    
T  13194197 ttaagattttatcattctctaaaagtttaattagcacataaatatatttttgaaataaaaagcaaagaagaaactta 13194273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 498 - 566
Target Start/End: Complemental strand, 19936671 - 19936603
Alignment:
Q  498 tttttgcagtttcagtttgaattagtttgatttacggtttttctattgggttggtccagttttgaacac 566  Q
    ||||||| ||||| ||||| ||| ||||| || |||||||||||||||||||||| | |||||||||||    
T  19936671 tttttgcggtttcggtttggattggtttggttcacggtttttctattgggttggttcggttttgaacac 19936603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 498 - 566
Target Start/End: Original strand, 20420891 - 20420959
Alignment:
Q  498 tttttgcagtttcagtttgaattagtttgatttacggtttttctattgggttggtccagttttgaacac 566  Q
    ||||||| |||||||||||  || ||| | ||| ||||||||||||||||||||| |||||||||||||    
T  20420891 tttttgcggtttcagtttgggttggttcggtttgcggtttttctattgggttggttcagttttgaacac 20420959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 498 - 550
Target Start/End: Original strand, 44086064 - 44086116
Alignment:
Q  498 tttttgcagtttcagtttgaattagtttgatttacggtttttctattgggttg 550  Q
    |||||||||||||||||||  ||| || |||||||||||||||||||||||||    
T  44086064 tttttgcagtttcagtttgggttaattcgatttacggtttttctattgggttg 44086116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 512 - 566
Target Start/End: Original strand, 11376432 - 11376486
Alignment:
Q  512 gtttgaattagtttgatttacggtttttctattgggttggtccagttttgaacac 566  Q
    ||||| ||| ||||||||| ||||||||||||||||||||| | |||||||||||    
T  11376432 gtttggattggtttgatttgcggtttttctattgggttggttcggttttgaacac 11376486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 254 - 360
Target Start/End: Original strand, 41166450 - 41166556
Alignment:
Q  254 taagattttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaagcacataaggaacttatccgtagaaaaaatatataatttt 353  Q
    ||||||||||| |||||||||||||||||||| ||  || ||| |||||| | |||||||||| | ||| |||||| |   |||||||| || | |||||    
T  41166450 taagattttattattctctaaaagttcaagtagcatataaatatatttttgacataaaaagcaaagaagaaacttaacaagagaaaaaacatgtcatttt 41166549  T
Q  354 ataaaaa 360  Q
    |||||||    
T  41166550 ataaaaa 41166556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 316
Target Start/End: Complemental strand, 5862440 - 5862383
Alignment:
Q  259 ttttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaagca 316  Q
    |||||||||||||||| |||||||||| ||| || |||||||||| ||| ||||||||    
T  5862440 ttttatcattctctaatagttcaagtagcacataaatacatttttgaaagaaaaagca 5862383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 391 - 468
Target Start/End: Original strand, 13194365 - 13194442
Alignment:
Q  391 tatgttgcggtttggtttggtttaattatgttgttaaaataacaaccgcaaatcaaaccaaactacgcggttgagtaa 468  Q
    ||||||| ||||||||||||||| |||  ||   |||||||| |||||||||||||||||||| | | ||||||||||    
T  13194365 tatgttgtggtttggtttggtttgattcggtccgtaaaataaaaaccgcaaatcaaaccaaaccatgtggttgagtaa 13194442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 423 - 476
Target Start/End: Original strand, 17763188 - 17763241
Alignment:
Q  423 gttaaaataacaaccgcaaatcaaaccaaactacgcggttgagtaagaaattaa 476  Q
    |||||||||| ||||| |||||||||||||||| | |||||||||| |||||||    
T  17763188 gttaaaataaaaaccgtaaatcaaaccaaactatgtggttgagtaaaaaattaa 17763241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 302
Target Start/End: Complemental strand, 30514729 - 30514681
Alignment:
Q  253 ttaagattttatcattctctaaaagttcaagtaacacgtagatacatttt 302  Q
    |||||||||||||||||||||||||||||||| |||| || |||||||||    
T  30514729 ttaagattttatcattctctaaaagttcaagt-acacataaatacatttt 30514681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 314
Target Start/End: Original strand, 44085785 - 44085845
Alignment:
Q  256 agattttatcattctctaaaagttcaagtaacacgtagataca--ttttttaaataaaaag 314  Q
    ||||||||||||||||||||| |||||||| ||| || |||||  ||||||||||||||||    
T  44085785 agattttatcattctctaaaatttcaagtagcacataaatacattttttttaaataaaaag 44085845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 254 - 314
Target Start/End: Original strand, 1331289 - 1331349
Alignment:
Q  254 taagattttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaag 314  Q
    ||||||||||| ||||| |||||||||||||| ||| || ||| |||||| ||||||||||    
T  1331289 taagattttattattctttaaaagttcaagtagcacataaatatatttttgaaataaaaag 1331349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 498 - 566
Target Start/End: Original strand, 9811853 - 9811921
Alignment:
Q  498 tttttgcagtttcagtttgaattagtttgatttacggtttttctattgggttggtccagttttgaacac 566  Q
    ||||||| ||||| ||||| ||| ||| | ||| ||||||||||||||||||||| | |||||||||||    
T  9811853 tttttgcggtttcggtttggattggttcggtttgcggtttttctattgggttggttcggttttgaacac 9811921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 258 - 313
Target Start/End: Complemental strand, 11051191 - 11051135
Alignment:
Q  258 attttatcattctctaaaagttcaagtaacacgtagatacatttttt-aaataaaaa 313  Q
    |||||||||||||||||||||||||||| ||  || ||||||||||| |||||||||    
T  11051191 attttatcattctctaaaagttcaagtagcatataaatacattttttgaaataaaaa 11051135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 498 - 566
Target Start/End: Original strand, 16579103 - 16579171
Alignment:
Q  498 tttttgcagtttcagtttgaattagtttgatttacggtttttctattgggttggtccagttttgaacac 566  Q
    ||||||| ||||| ||||| ||| ||| | ||| ||||||||||||||||||||| | |||||||||||    
T  16579103 tttttgcggtttcggtttggattggttcggtttgcggtttttctattgggttggttcggttttgaacac 16579171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 260 - 316
Target Start/End: Complemental strand, 31719860 - 31719804
Alignment:
Q  260 tttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaagca 316  Q
    |||||||||||||||||||||||||| ||  || ||| |||||| ||||||||||||    
T  31719860 tttatcattctctaaaagttcaagtagcatataaatatatttttaaaataaaaagca 31719804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 498 - 566
Target Start/End: Complemental strand, 36412907 - 36412839
Alignment:
Q  498 tttttgcagtttcagtttgaattagtttgatttacggtttttctattgggttggtccagttttgaacac 566  Q
    ||||||| ||||| |||||  || ||| ||||| ||||||||||||||||||||| | |||||||||||    
T  36412907 tttttgcggtttcggtttgggttggttcgatttgcggtttttctattgggttggttcggttttgaacac 36412839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 316
Target Start/End: Complemental strand, 30759421 - 30759358
Alignment:
Q  253 ttaagattttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaagca 316  Q
    |||||||||||||||||| ||||| ||||||||  || || ||| |||||| ||||||||||||    
T  30759421 ttaagattttatcattctataaaatttcaagtagtacataaatatatttttgaaataaaaagca 30759358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 55; Significance: 5e-22; HSPs: 4)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 258 - 392
Target Start/End: Original strand, 26165 - 26298
Alignment:
Q  258 attttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaagcacataaggaacttatccgtagaaaaaatatataattttataa 357  Q
    ||||||||||||| |||||||||||||||||| || |||||||||| |||||||||||| | ||| |||||| |  |||||||||||| | ||||||| |    
T  26165 attttatcattctttaaaagttcaagtaacacataaatacatttttgaaataaaaagcaaagaagaaacttaacaatagaaaaaatatgtcattttat-a 26263  T
Q  358 aaagtttagattgagttattatgagaattgatcta 392  Q
    |||||||  ||||||||  |||||| |||| ||||    
T  26264 aaagtttccattgagtttctatgagtattggtcta 26298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204; HSP #2
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 506 - 566
Target Start/End: Original strand, 15102 - 15162
Alignment:
Q  506 gtttcagtttgaattagtttgatttacggtttttctattgggttggtccagttttgaacac 566  Q
    |||||||||||  || ||||||||| |||||||||||||||||||||   |||||||||||    
T  15102 gtttcagtttgggttggtttgatttgcggtttttctattgggttggtttggttttgaacac 15162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204; HSP #3
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 391 - 546
Target Start/End: Original strand, 26323 - 26483
Alignment:
Q  391 tatgttgcggtttggtttggtttaattatgttgttaaaataacaaccgcaaatcaaaccaaactacgcggttgagtaagaaatt-----aaatacatctg 485  Q
    ||||||||||||| |||||||||  ||  |||| |||||| | ||||||||| |||||||||| | ||||||||| || ||| |      ||||||||      
T  26323 tatgttgcggttttgtttggtttggttcggttggtaaaatgaaaaccgcaaaccaaaccaaaccatgcggttgagcaaaaaagtgatccgaatacatcca 26422  T
Q  486 aattaaatatgatttttgcagtttcagtttgaattagtttgatttacggtttttctattgg 546  Q
    || |||||  | |||||||||||||||||||  || ||| | ||| |||||||||||||||    
T  26423 aactaaatgcggtttttgcagtttcagtttgggttggttcggtttgcggtttttctattgg 26483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 314
Target Start/End: Original strand, 14822 - 14879
Alignment:
Q  256 agattttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaag 314  Q
    ||||||||||||||| |||||||||||| | ||| || |||||||||||||||| ||||    
T  14822 agattttatcattct-taaaagttcaaggagcacataaatacattttttaaatagaaag 14879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 5e-22; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 258 - 392
Target Start/End: Original strand, 48338643 - 48338776
Alignment:
Q  258 attttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaagcacataaggaacttatccgtagaaaaaatatataattttataa 357  Q
    ||||||||||||| |||||||||||||||||| || |||||||||| |||||||||||| | ||| |||||| |  |||||||||||| | ||||||| |    
T  48338643 attttatcattctttaaaagttcaagtaacacataaatacatttttgaaataaaaagcaaagaagaaacttaacaatagaaaaaatatgtcattttat-a 48338741  T
Q  358 aaagtttagattgagttattatgagaattgatcta 392  Q
    |||||||  ||||||||  |||||| |||| ||||    
T  48338742 aaagtttccattgagtttctatgagtattggtcta 48338776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 391 - 472
Target Start/End: Original strand, 3999217 - 3999298
Alignment:
Q  391 tatgttgcggtttggtttggtttaattatgttgttaaaataacaaccgcaaatcaaaccaaactacgcggttgagtaagaaa 472  Q
    |||||||||||||||||||||||||||  |||| |||||||| ||||||||| | |||||||| | | ||||||||||||||    
T  3999217 tatgttgcggtttggtttggtttaattcagttggtaaaataaaaaccgcaaaccgaaccaaaccatgtggttgagtaagaaa 3999298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 498 - 566
Target Start/End: Original strand, 51395356 - 51395424
Alignment:
Q  498 tttttgcagtttcagtttgaattagtttgatttacggtttttctattgggttggtccagttttgaacac 566  Q
    ||||||| ||||| ||||||||| ||||||||| ||||||||||||||||||||| | |||||||||||    
T  51395356 tttttgcggtttcggtttgaattggtttgatttgcggtttttctattgggttggttcggttttgaacac 51395424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 256 - 359
Target Start/End: Complemental strand, 18536445 - 18536342
Alignment:
Q  256 agattttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaagcacataaggaacttatccgtagaaaaaatatataattttat 355  Q
    |||| ||||||||||||||||||||||||| ||| || |||||||||| |||||||||||  | ||| |||||| |   ||||||||||| | |||||||    
T  18536445 agatgttatcattctctaaaagttcaagtagcacataaatacatttttgaaataaaaagcgaagaagaaacttaacaagagaaaaaatatgtcattttat 18536346  T
Q  356 aaaa 359  Q
    ||||    
T  18536345 aaaa 18536342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 391 - 566
Target Start/End: Complemental strand, 18881673 - 18881491
Alignment:
Q  391 tatgttgcggtttggtttggtttaattatgttgttaaaataacaaccgcaaatcaaaccaaactacgcggttgagtaagaaattaa-----atacatctg 485  Q
    ||||||||||||||||| |||||| ||  |||| |||||||| || |||||| ||||||||||||| ||||||||||  ||| | |     |||||||      
T  18881673 tatgttgcggtttggttcggtttagttcagttgataaaataaaaatcgcaaaccaaaccaaactacacggttgagtataaaagtgattcgaatacatcca 18881574  T
Q  486 aattaaatatgattttt--gcagtttcagtttgaattagtttgatttacggtttttctattgggttggtccagttttgaacac 566  Q
    ||  ||||   ||||||  ||||||||||||||| || |||||||||||||||||| |||||| ||||| | ||||| |||||    
T  18881573 aaccaaatgcaatttttttgcagtttcagtttgagttggtttgatttacggtttttttattggattggttcggttttaaacac 18881491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 253 - 360
Target Start/End: Original strand, 46471721 - 46471828
Alignment:
Q  253 ttaagattttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaagcacataaggaacttatccgtagaaaaaatatataattt 352  Q
    ||||||||||||||||||||||||||| ||||| ||| || |||||||||| |||||||||| | | ||  |||||| |   ||||||||||| | ||||    
T  46471721 ttaagattttatcattctctaaaagttgaagtatcacataaatacatttttgaaataaaaagtaaagaaaaaacttaacaagagaaaaaatatgtcattt 46471820  T
Q  353 tataaaaa 360  Q
    ||||||||    
T  46471821 tataaaaa 46471828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 254 - 316
Target Start/End: Original strand, 45226668 - 45226730
Alignment:
Q  254 taagattttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaagca 316  Q
    |||||||||||||||||||||| |||||| || |||||| |||||||||| ||||||||||||    
T  45226668 taagattttatcattctctaaaggttcaaatagcacgtaaatacatttttgaaataaaaagca 45226730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 254 - 359
Target Start/End: Complemental strand, 5122168 - 5122063
Alignment:
Q  254 taagattttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaagcacataaggaacttatccgtagaaaaaatatataatttt 353  Q
    |||| |||||||||| | |||||||||||||| ||| || |||| |||||||||||||||||| | || ||||||| |   ||||||||||| | |||||    
T  5122168 taaggttttatcattatataaaagttcaagtagcacataaatacgttttttaaataaaaagcaaagaaagaacttaacaagagaaaaaatatgtcatttt 5122069  T
Q  354 ataaaa 359  Q
    ||||||    
T  5122068 ataaaa 5122063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 149 - 224
Target Start/End: Complemental strand, 5122270 - 5122195
Alignment:
Q  149 aacattacattttcattgacatccaacgatgttcacaacaatataaaccaaattaaaaacatggacataaagtaat 224  Q
    ||||||||| |||||||  ||| | ||||||||  ||||||||||||||||||||||||| |||||| ||||||||    
T  5122270 aacattacaatttcattttcattctacgatgtttccaacaatataaaccaaattaaaaacgtggacaaaaagtaat 5122195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 254 - 329
Target Start/End: Original strand, 49641128 - 49641203
Alignment:
Q  254 taagattttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaagcacataaggaactta 329  Q
    ||||||||||||||| |||||||||||||||||||| || |||||||||| || | ||||||| | ||| ||||||    
T  49641128 taagattttatcattatctaaaagttcaagtaacacataaatacatttttgaagtgaaaagcaaaaaagaaactta 49641203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 254 - 359
Target Start/End: Complemental strand, 3666856 - 3666751
Alignment:
Q  254 taagattttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaagcacataaggaacttatccgtagaaaaaatatataatttt 353  Q
    ||||||||||||||||| ||||||||||||||| || || ||||||||    ||||||||||| | ||  |||||| |   ||||||||||||| |||||    
T  3666856 taagattttatcattctttaaaagttcaagtaatacataaatacatttcagcaataaaaagcatagaaaaaacttaacaagagaaaaaatatatcatttt 3666757  T
Q  354 ataaaa 359  Q
    ||||||    
T  3666756 ataaaa 3666751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 258 - 374
Target Start/End: Complemental strand, 32223095 - 32222982
Alignment:
Q  258 attttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaagcacataaggaacttatccgtagaaaaaatatataattttataa 357  Q
    |||||||||||||||||||||||||||| |||  | ||||| |||| |||||||||| | | ||| |||||| |   ||||||||||| | ||||||| |    
T  32223095 attttatcattctctaaaagttcaagtagcacacaaatacacttttgaaataaaaagtaaagaagaaacttaac--aagaaaaaatatgtcattttat-a 32222999  T
Q  358 aaagtttagattgagtt 374  Q
    |||||||| ||||||||    
T  32222998 aaagtttacattgagtt 32222982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 391 - 472
Target Start/End: Original strand, 45983794 - 45983875
Alignment:
Q  391 tatgttgcggtttggtttggtttaattatgttgttaaaataacaaccgcaaatcaaaccaaactacgcggttgagtaagaaa 472  Q
    ||||||||||||||||||||||| |||  |||| |||||| | ||||||||| |||||||||| | | ||||||| ||||||    
T  45983794 tatgttgcggtttggtttggtttgattcggttggtaaaatgaaaaccgcaaaccaaaccaaaccatgtggttgagcaagaaa 45983875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 498 - 566
Target Start/End: Original strand, 31301926 - 31301994
Alignment:
Q  498 tttttgcagtttcagtttgaattagtttgatttacggtttttctattgggttggtccagttttgaacac 566  Q
    ||||||||||||| || || ||| ||||| ||| ||||||||||||||||||||| | |||||||||||    
T  31301926 tttttgcagtttcggtctggattggtttggtttgcggtttttctattgggttggttcggttttgaacac 31301994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 498 - 566
Target Start/End: Original strand, 32137232 - 32137300
Alignment:
Q  498 tttttgcagtttcagtttgaattagtttgatttacggtttttctattgggttggtccagttttgaacac 566  Q
    ||||||| ||||| ||||| ||| ||||| ||| ||||||||||||||||||||| | |||||||||||    
T  32137232 tttttgcggtttcggtttggattggtttggtttgcggtttttctattgggttggttcggttttgaacac 32137300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 258 - 313
Target Start/End: Original strand, 35014574 - 35014629
Alignment:
Q  258 attttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaa 313  Q
    |||||||||||||||| ||||| ||||| ||| || ||||||||||||||||||||    
T  35014574 attttatcattctctagaagtttaagtagcacataaatacattttttaaataaaaa 35014629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 253 - 315
Target Start/End: Complemental strand, 1920365 - 1920304
Alignment:
Q  253 ttaagattttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaagc 315  Q
    |||||||||||| |||||||||||||||||||| | | || | ||||||||||||||||||||    
T  1920365 ttaagattttattattctctaaaagttcaagtagctc-taaacacattttttaaataaaaagc 1920304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 498 - 552
Target Start/End: Original strand, 6333849 - 6333903
Alignment:
Q  498 tttttgcagtttcagtttgaattagtttgatttacggtttttctattgggttggt 552  Q
    ||||||| ||||| ||||| ||||||||| ||| |||||||||||||||||||||    
T  6333849 tttttgcggtttcggtttggattagtttggtttgcggtttttctattgggttggt 6333903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 7784396 - 7784351
Alignment:
Q  184 caacaatataaaccaaattaaaaacatggacataaagtaatcatat 229  Q
    |||||| ||| ||||||||||||||||||||| |||||||||||||    
T  7784396 caacaacatagaccaaattaaaaacatggacaaaaagtaatcatat 7784351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 395 - 566
Target Start/End: Original strand, 20986866 - 20987043
Alignment:
Q  395 ttgcggtttggtttggtttaattatgttgttaaaataacaaccgcaaatcaaaccaaactacgcggttgagtaagaaattaa-----atacatctgaatt 489  Q
    |||||||||||||||||||  ||  |||  |||||| | || | |||| |||||||||| | |||||||||||| ||||| |     ||||||| |||      
T  20986866 ttgcggtttggtttggtttggttcggttagtaaaatcaaaatcccaaaccaaaccaaacaatgcggttgagtaaaaaattgatccgaatacatccgaacc 20986965  T
Q  490 aaatatgattttt-gcagtttcagtttgaattagtttgatttacggtttttctattgggttggtccagttttgaacac 566  Q
    ||||  ||||||| || ||||| ||||| ||| ||||| ||| ||||||||||||||| ||||| | |||||||||||    
T  20986966 aaatgcgattttttgcggtttcggtttggattggtttggtttgcggtttttctattggattggttctgttttgaacac 20987043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 315
Target Start/End: Complemental strand, 25686243 - 25686187
Alignment:
Q  258 attttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaagc 315  Q
    ||||||||||||| |||||||||||||| ||| || |||||||||| |||||||||||    
T  25686243 attttatcattctttaaaagttcaagtagcac-taaatacatttttaaaataaaaagc 25686187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 500 - 565
Target Start/End: Complemental strand, 40806362 - 40806297
Alignment:
Q  500 tttgcagtttcagtttgaattagtttgatttacggtttttctattgggttggtccagttttgaaca 565  Q
    ||||||||||| ||||| ||| |||||||||||| ||||| ||||| |||||| | ||||||||||    
T  40806362 tttgcagtttcggtttgtattggtttgatttacgatttttttattgagttggttcggttttgaaca 40806297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 498 - 566
Target Start/End: Original strand, 10219210 - 10219278
Alignment:
Q  498 tttttgcagtttcagtttgaattagtttgatttacggtttttctattgggttggtccagttttgaacac 566  Q
    ||||||| ||||| ||||| ||| ||||| ||| |||||||||||||||||| || | |||||||||||    
T  10219210 tttttgcggtttcggtttggattggtttggtttgcggtttttctattgggttcgttcggttttgaacac 10219278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 498 - 566
Target Start/End: Complemental strand, 29643317 - 29643249
Alignment:
Q  498 tttttgcagtttcagtttgaattagtttgatttacggtttttctattgggttggtccagttttgaacac 566  Q
    ||||||| ||||| |||||  || ||| | ||| ||||||||||||||||||||| |||||||||||||    
T  29643317 tttttgcggtttcggtttgggttggttcggtttgcggtttttctattgggttggttcagttttgaacac 29643249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 258 - 314
Target Start/End: Complemental strand, 36106254 - 36106198
Alignment:
Q  258 attttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaag 314  Q
    ||||||||||||||| |||||||||| | ||| || |||||||||| ||||||||||    
T  36106254 attttatcattctcttaaagttcaaggagcacataaatacatttttgaaataaaaag 36106198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 498 - 566
Target Start/End: Original strand, 42558196 - 42558264
Alignment:
Q  498 tttttgcagtttcagtttgaattagtttgatttacggtttttctattgggttggtccagttttgaacac 566  Q
    ||||||| ||||| ||||| ||| ||| | ||| ||||||||||||||||||||| | |||||||||||    
T  42558196 tttttgcggtttcggtttggattggttcggtttgcggtttttctattgggttggttcggttttgaacac 42558264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 391 - 546
Target Start/End: Original strand, 48338801 - 48338961
Alignment:
Q  391 tatgttgcggtttggtttggtttaattatgttgttaaaataacaaccgcaaatcaaaccaaactacgcggttgagtaagaaatt-----aaatacatctg 485  Q
    ||||||||||||| |||||||||  ||  |||| |||||| | ||||||||| |||||||||| | ||||||||| || ||| |      ||||||||      
T  48338801 tatgttgcggttttgtttggtttggttcggttggtaaaatgaaaaccgcaaaccaaaccaaaccatgcggttgagcaaaaaagtgatccgaatacatcca 48338900  T
Q  486 aattaaatatgatttttgcagtttcagtttgaattagtttgatttacggtttttctattgg 546  Q
    || |||||  | |||||||||||||||||||  || ||| | ||| |||||||||||||||    
T  48338901 aactaaatgcggtttttgcagtttcagtttgggttggttcggtttgcggtttttctattgg 48338961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 254 - 314
Target Start/End: Complemental strand, 48602297 - 48602237
Alignment:
Q  254 taagattttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaag 314  Q
    ||||||||||||||| |||||||||||||||| ||| || | | |||||| ||||||||||    
T  48602297 taagattttatcattatctaaaagttcaagtagcacataaacatatttttgaaataaaaag 48602237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 498 - 566
Target Start/End: Complemental strand, 50570568 - 50570500
Alignment:
Q  498 tttttgcagtttcagtttgaattagtttgatttacggtttttctattgggttggtccagttttgaacac 566  Q
    ||||||| ||||| ||||| ||| ||| | ||| ||||||||||||||||||||| | |||||||||||    
T  50570568 tttttgcggtttcggtttggattggttcggtttgcggtttttctattgggttggttcggttttgaacac 50570500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 329
Target Start/End: Original strand, 21069357 - 21069427
Alignment:
Q  259 ttttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaagcacataaggaactta 329  Q
    |||||||||||||||| ||||||||||  || || |||||||||| ||| |||||||| | ||| ||||||    
T  21069357 ttttatcattctctaagagttcaagtagtacataaatacatttttgaaacaaaaagcaaagaagaaactta 21069427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 303
Target Start/End: Complemental strand, 48293215 - 48293165
Alignment:
Q  253 ttaagattttatcattctctaaaagttcaagtaacacgtagatacattttt 303  Q
    |||||||||||| ||| |||||||||||||||| ||| || ||||||||||    
T  48293215 ttaagattttattattttctaaaagttcaagtagcacataaatacattttt 48293165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 395 - 468
Target Start/End: Original strand, 8485145 - 8485218
Alignment:
Q  395 ttgcggtttggtttggtttaattatgttgttaaaataacaaccgcaaatcaaaccaaactacgcggttgagtaa 468  Q
    |||||||||||||||||||| ||  |||| |||||| | ||||||||| |  ||||||| | ||||||||||||    
T  8485145 ttgcggtttggtttggtttagttcggttggtaaaatcaaaaccgcaaaccggaccaaaccatgcggttgagtaa 8485218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 314
Target Start/End: Original strand, 14867061 - 14867122
Alignment:
Q  253 ttaagattttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaag 314  Q
    ||||||||||||||||| ||||||| ||||||||||| || | | |||||  ||||||||||    
T  14867061 ttaagattttatcattccctaaaagatcaagtaacacataaaaatattttagaaataaaaag 14867122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 391 - 468
Target Start/End: Original strand, 41260572 - 41260649
Alignment:
Q  391 tatgttgcggtttggtttggtttaattatgttgttaaaataacaaccgcaaatcaaaccaaactacgcggttgagtaa 468  Q
    |||||||| |||||||||||||| |||  |||| |||||||| |||| |||||  |||| ||| | ||||||||||||    
T  41260572 tatgttgcagtttggtttggtttgattcggttggtaaaataaaaaccacaaattgaaccgaaccatgcggttgagtaa 41260649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 1e-19; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 13 - 134
Target Start/End: Original strand, 26373552 - 26373673
Alignment:
Q  13 agcacagaccaccaacacaaacggttccaaacgcgcttgaattctgatcaagggatga-tccaacacacgttagtaaccaaacagcccttacgggttaaa 111  Q
    |||||||||||||||||||| | ||| || ||| |  ||||  | ||| | ||||||| ||||||||||||||||||||||||||||||||||||||  |    
T  26373552 agcacagaccaccaacacaaccagtttcagacgtgtctgaacccagattatgggatgagtccaacacacgttagtaaccaaacagcccttacgggtt-ta 26373650  T
Q  112 aagaaccataccctttggggttt 134  Q
    |||||||||||||||| ||||||    
T  26373651 aagaaccataccctttcgggttt 26373673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 259 - 345
Target Start/End: Original strand, 54122623 - 54122709
Alignment:
Q  259 ttttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaagcacataaggaacttatccgtagaaaaaatat 345  Q
    |||||||||||||||| |||||||||| ||| || |||||||||| ||| |||||||| ||||| |||||| ||  |||||||||||    
T  54122623 ttttatcattctctaagagttcaagtagcacataaatacatttttaaaagaaaaagcaaataagaaacttaaccagagaaaaaatat 54122709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 258 - 387
Target Start/End: Complemental strand, 2832168 - 2832040
Alignment:
Q  258 attttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaagcacataaggaacttatccgtagaaaaaatatataattttataa 357  Q
    |||||||||||||| ||||||||||||| ||| || ||| |||||| ||||||||| || | ||| |||||| |   |||||||| || | ||||||| |    
T  2832168 attttatcattctcgaaaagttcaagtagcacataaatatatttttgaaataaaaaccaaagaagaaacttaacaagagaaaaaaaatgtcattttat-a 2832070  T
Q  358 aaagtttagattgagttattatgagaattg 387  Q
    |||||||| |||||||| ||||||| ||||    
T  2832069 aaagtttacattgagtttttatgagtattg 2832040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 391 - 468
Target Start/End: Complemental strand, 42362839 - 42362762
Alignment:
Q  391 tatgttgcggtttggtttggtttaattatgttgttaaaataacaaccgcaaatcaaaccaaactacgcggttgagtaa 468  Q
    ||||||||||||||||||||||| |||  |||| |||||| | ||||||||| |||||||||| | ||||||||||||    
T  42362839 tatgttgcggtttggtttggtttgattcagttggtaaaatgaaaaccgcaaaccaaaccaaaccatgcggttgagtaa 42362762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 498 - 566
Target Start/End: Complemental strand, 21586398 - 21586330
Alignment:
Q  498 tttttgcagtttcagtttgaattagtttgatttacggtttttctattgggttggtccagttttgaacac 566  Q
    ||||||||||||||||||| ||| ||||| ||| |||||||| |||||||||||| | |||||||||||    
T  21586398 tttttgcagtttcagtttggattggtttggtttgcggtttttttattgggttggttcggttttgaacac 21586330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 254 - 313
Target Start/End: Original strand, 4280583 - 4280642
Alignment:
Q  254 taagattttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaa 313  Q
    ||||||||||||||| ||||||||| |||||||||||||  ||||||||| |||||||||    
T  4280583 taagattttatcattttctaaaagtgcaagtaacacgtaagtacatttttgaaataaaaa 4280642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 258 - 312
Target Start/End: Original strand, 4669031 - 4669085
Alignment:
Q  258 attttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaa 312  Q
    |||||||||||||||||||||||||||| ||| || |||||||||| ||||||||    
T  4669031 attttatcattctctaaaagttcaagtagcacataaatacatttttgaaataaaa 4669085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 254 - 359
Target Start/End: Original strand, 44651258 - 44651363
Alignment:
Q  254 taagattttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaagcacataaggaacttatccgtagaaaaaatatataatttt 353  Q
    ||||||||| ||||||||||||| |||||||| ||| || |||| ||||||||||||||| || | ||||||  || |   ||||||||||| | |||||    
T  44651258 taagattttttcattctctaaaatttcaagtagcacataaatacgttttttaaataaaaaacaaagaaggaatctaacaagagaaaaaatatgtcatttt 44651357  T
Q  354 ataaaa 359  Q
    ||||||    
T  44651358 ataaaa 44651363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 498 - 566
Target Start/End: Complemental strand, 6003939 - 6003871
Alignment:
Q  498 tttttgcagtttcagtttgaattagtttgatttacggtttttctattgggttggtccagttttgaacac 566  Q
    ||||||| ||||  ||||| ||| ||||||||| ||||||||||||||||||||| | |||||||||||    
T  6003939 tttttgctgttttggtttggattggtttgatttgcggtttttctattgggttggttcggttttgaacac 6003871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 253 - 313
Target Start/End: Original strand, 20846769 - 20846829
Alignment:
Q  253 ttaagattttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaa 313  Q
    ||||||||||||||||||||||||||||||  || || ||  |||||||||||||||||||    
T  20846769 ttaagattttatcattctctaaaagttcaaacaatacataattacattttttaaataaaaa 20846829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 498 - 566
Target Start/End: Original strand, 39098445 - 39098513
Alignment:
Q  498 tttttgcagtttcagtttgaattagtttgatttacggtttttctattgggttggtccagttttgaacac 566  Q
    |||||||  |||||||||| |||  |||||||| ||||||||||||||||||||| ||||||| |||||    
T  39098445 tttttgcgctttcagtttggattgatttgatttgcggtttttctattgggttggttcagttttaaacac 39098513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 498 - 566
Target Start/End: Original strand, 48169243 - 48169311
Alignment:
Q  498 tttttgcagtttcagtttgaattagtttgatttacggtttttctattgggttggtccagttttgaacac 566  Q
    ||||||| | ||| ||||||||| ||||||||||||||||||||||||| ||| | | |||||||||||    
T  48169243 tttttgcggcttcggtttgaattggtttgatttacggtttttctattggattgattcggttttgaacac 48169311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 313
Target Start/End: Complemental strand, 5640514 - 5640455
Alignment:
Q  254 taagattttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaa 313  Q
    ||||||||||||||||||||||| |||||||| |||||| |||| ||  |||||||||||    
T  5640514 taagattttatcattctctaaaatttcaagtagcacgtaaatacgttaattaaataaaaa 5640455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 313
Target Start/End: Complemental strand, 10481404 - 10481345
Alignment:
Q  254 taagattttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaa 313  Q
    ||||||||||||||| |||||||||| ||||| ||| || |||||||||| |||||||||    
T  10481404 taagattttatcattttctaaaagttaaagtagcacataaatacatttttgaaataaaaa 10481345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 345
Target Start/End: Complemental strand, 22472851 - 22472760
Alignment:
Q  254 taagattttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaagcacataaggaacttatccgtagaaaaaatat 345  Q
    ||||||||||||||| ||||||||||||||||  || || |||||||||| ||||||||  || ||||| |||||| |   |||||||||||    
T  22472851 taagattttatcattttctaaaagttcaagtagaacataaatacatttttgaaataaaagacaaataagaaacttaacaagagaaaaaatat 22472760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 313
Target Start/End: Original strand, 44662232 - 44662291
Alignment:
Q  254 taagattttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaa 313  Q
    ||||||||||||||||| |||||||||||||||||  || ||| |||||| |||||||||    
T  44662232 taagattttatcattctttaaaagttcaagtaacatataaatatatttttgaaataaaaa 44662291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 391 - 450
Target Start/End: Complemental strand, 51660621 - 51660562
Alignment:
Q  391 tatgttgcggtttggtttggtttaattatgttgttaaaataacaaccgcaaatcaaacca 450  Q
    ||||||||||||||||||||||| |||  |||| |||||||| ||||||||| |||||||    
T  51660621 tatgttgcggtttggtttggtttgattcagttggtaaaataaaaaccgcaaaccaaacca 51660562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 391 - 472
Target Start/End: Complemental strand, 38651660 - 38651579
Alignment:
Q  391 tatgttgcggtttggtttggtttaattatgttgttaaaataacaaccgcaaatcaaaccaaactacgcggttgagtaagaaa 472  Q
    |||||||||||||||||||||||  ||  |||| |||||| | ||||||||| |||| ||||| | ||||||||| ||||||    
T  38651660 tatgttgcggtttggtttggtttggttcagttggtaaaatgaaaaccgcaaaccaaatcaaaccatgcggttgagcaagaaa 38651579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 327
Target Start/End: Complemental strand, 42363004 - 42362931
Alignment:
Q  254 taagattttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaagcacataaggaact 327  Q
    ||||||||||||||||||||||||| |||| | ||| || |||| ||||| |||||||||| | | ||||||||    
T  42363004 taagattttatcattctctaaaagtacaagcagcacataaatacgtttttgaaataaaaagtaaagaaggaact 42362931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 498 - 566
Target Start/End: Complemental strand, 4669203 - 4669135
Alignment:
Q  498 tttttgcagtttcagtttgaattagtttgatttacggtttttctattgggttggtccagttttgaacac 566  Q
    ||||||||||||| |||||  || ||| | ||| ||||||||||||||||||||| | |||||||||||    
T  4669203 tttttgcagtttcggtttgggttggttcggtttgcggtttttctattgggttggttcggttttgaacac 4669135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 391 - 455
Target Start/End: Original strand, 20038932 - 20038996
Alignment:
Q  391 tatgttgcggtttggtttggtttaattatgttgttaaaataacaaccgcaaatcaaaccaaacta 455  Q
    ||||||||||||||||| ||||| |||  |||| |||||| | ||||||||| ||||||||||||    
T  20038932 tatgttgcggtttggttcggtttgattcagttgctaaaattaaaaccgcaaaccaaaccaaacta 20038996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 498 - 566
Target Start/End: Original strand, 33361426 - 33361494
Alignment:
Q  498 tttttgcagtttcagtttgaattagtttgatttacggtttttctattgggttggtccagttttgaacac 566  Q
    ||||||| ||||| ||||| ||| ||| | ||| ||||||||||||||||||||| | |||||||||||    
T  33361426 tttttgcggtttcggtttggattggttcggtttgcggtttttctattgggttggttcggttttgaacac 33361494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 259 - 355
Target Start/End: Original strand, 48168973 - 48169069
Alignment:
Q  259 ttttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaagcacataaggaacttatccgtagaaaaaatatataattttat 355  Q
    |||||||||||||||| ||||||||||  || || |||||||||| ||| ||| |||| | ||| |||||| | | ||||||||||| | |||||||    
T  48168973 ttttatcattctctaagagttcaagtagtacataaatacatttttgaaagaaatagcaaagaagaaacttagcagaagaaaaaatatgtcattttat 48169069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 498 - 566
Target Start/End: Complemental strand, 51149278 - 51149210
Alignment:
Q  498 tttttgcagtttcagtttgaattagtttgatttacggtttttctattgggttggtccagttttgaacac 566  Q
    ||||||| ||||| ||||| ||| ||| | ||| ||||||||||||||||||||| | |||||||||||    
T  51149278 tttttgcggtttcggtttggattggttcggtttgcggtttttctattgggttggttcggttttgaacac 51149210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 313
Target Start/End: Complemental strand, 36330462 - 36330403
Alignment:
Q  254 taagattttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaa 313  Q
    ||||||| ||||||||||||||| |||||||| |||||| ||| || ||| |||||||||    
T  36330462 taagattgtatcattctctaaaaattcaagtagcacgtaaatatatctttaaaataaaaa 36330403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 313
Target Start/End: Complemental strand, 25919034 - 25918980
Alignment:
Q  259 ttttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaa 313  Q
    |||||||||||||||| |||||||||| ||| || |||||||||| ||| |||||    
T  25919034 ttttatcattctctaagagttcaagtagcacataaatacatttttgaaacaaaaa 25918980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 260 - 305
Target Start/End: Original strand, 8355630 - 8355675
Alignment:
Q  260 tttatcattctctaaaagttcaagtaacacgtagatacatttttta 305  Q
    ||||||||||||||| |||||||||| ||| || ||||||||||||    
T  8355630 tttatcattctctaagagttcaagtagcacataaatacatttttta 8355675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 399 - 468
Target Start/End: Complemental strand, 10481226 - 10481157
Alignment:
Q  399 ggtttggtttggtttaattatgttgttaaaataacaaccgcaaatcaaaccaaactacgcggttgagtaa 468  Q
    |||||||||||||||  ||  |||| |||||||| |||||||||||||| ||||| |  |||||||||||    
T  10481226 ggtttggtttggtttggttcggttgataaaataaaaaccgcaaatcaaatcaaaccatacggttgagtaa 10481157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 27054292 - 27054352
Alignment:
Q  168 catccaacgatgttcacaacaatataaaccaaattaaaaacatggacataaagtaatcatat 229  Q
    |||||||| || ||| |||| |||||||||||||| |||| ||||||| |||||||||||||    
T  27054292 catccaacaatattcccaactatataaaccaaatt-aaaatatggacaaaaagtaatcatat 27054352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 264 - 329
Target Start/End: Original strand, 37045617 - 37045680
Alignment:
Q  264 tcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaagcacataaggaactta 329  Q
    |||||||||||||||| ||||| ||| || ||||||||| ||||||||||||| |||| |||||||    
T  37045617 tcattctctaaaagtt-aagtagcacataaatacatttt-taaataaaaagcaaataatgaactta 37045680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 391 - 464
Target Start/End: Complemental strand, 51661992 - 51661919
Alignment:
Q  391 tatgttgcggtttggtttggtttaattatgttgttaaaataacaaccgcaaatcaaaccaaactacgcggttga 464  Q
    |||||||||||||||||||| ||  ||  |||| ||||| || ||||||||| |||||||||| | ||||||||    
T  51661992 tatgttgcggtttggtttgggttggttcggttggtaaaacaaaaaccgcaaaccaaaccaaaccatgcggttga 51661919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 2e-18; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 254 - 314
Target Start/End: Original strand, 25715546 - 25715606
Alignment:
Q  254 taagattttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaag 314  Q
    |||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||    
T  25715546 taagattttatcattctctaaaagttcaagtagcacataaatacattttttaaataaaaag 25715606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 253 - 359
Target Start/End: Original strand, 6633598 - 6633704
Alignment:
Q  253 ttaagattttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaagcacataaggaacttatccgtagaaaaaatatataattt 352  Q
    ||||||||||||||||||||| ||||||||||| ||| |  |||||||||| |||| ||||||| | ||  ||||||||   ||||||||||| | ||||    
T  6633598 ttaagattttatcattctctacaagttcaagtagcacatcaatacatttttgaaatcaaaagcaaagaaaaaacttatcaacagaaaaaatatgtcattt 6633697  T
Q  353 tataaaa 359  Q
    |||||||    
T  6633698 tataaaa 6633704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 254 - 392
Target Start/End: Original strand, 22553653 - 22553790
Alignment:
Q  254 taagattttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaagcacataaggaacttatccgtagaaaaaatatataatttt 353  Q
    |||||||||||||||||||||||||||||||||||| || | | |||||  |||||||||| | | ||| |||||| |   ||||||||||| | |||||    
T  22553653 taagattttatcattctctaaaagttcaagtaacacataaaaatattttagaaataaaaagtaaagaagaaacttaacaagagaaaaaatatgtcatttt 22553752  T
Q  354 ataaaaagtttagattgagttattatgagaattgatcta 392  Q
    || | ||||||  ||||||||  |||||| |||||||||    
T  22553753 at-agaagttttaattgagtttctatgagtattgatcta 22553790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 255 - 313
Target Start/End: Complemental strand, 31075407 - 31075349
Alignment:
Q  255 aagattttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaa 313  Q
    ||||||||||||||||||||||||||||||||||| || ||||| |||| |||||||||    
T  31075407 aagattttatcattctctaaaagttcaagtaacacataaatacacttttgaaataaaaa 31075349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 393 - 472
Target Start/End: Complemental strand, 691228 - 691149
Alignment:
Q  393 tgttgcggtttggtttggtttaattatgttgttaaaataacaaccgcaaatcaaaccaaactacgcggttgagtaagaaa 472  Q
    |||||||||||||||||||||  ||  |||| |||||| | |||||||||||||||||||| | ||||||||| ||||||    
T  691228 tgttgcggtttggtttggtttggttcggttggtaaaatgaaaaccgcaaatcaaaccaaaccatgcggttgagcaagaaa 691149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 254 - 329
Target Start/End: Complemental strand, 12378869 - 12378794
Alignment:
Q  254 taagattttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaagcacataaggaactta 329  Q
    ||||||||||||||||| |||||||| ||||| ||| || |||||||||| |||||||||||| | ||| ||||||    
T  12378869 taagattttatcattctttaaaagtttaagtagcacataaatacatttttgaaataaaaagcaaagaagaaactta 12378794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 253 - 316
Target Start/End: Complemental strand, 40109407 - 40109344
Alignment:
Q  253 ttaagattttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaagca 316  Q
    |||||||||||||||||| | ||||||||| || |||||| |||||||||| ||||||||||||    
T  40109407 ttaagattttatcattctatgaaagttcaaatagcacgtaaatacatttttgaaataaaaagca 40109344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 254 - 313
Target Start/End: Complemental strand, 40331269 - 40331210
Alignment:
Q  254 taagattttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaa 313  Q
    |||||||||||||||||||||||||||||||| ||| || ||||||||||  ||||||||    
T  40331269 taagattttatcattctctaaaagttcaagtagcacataaatacatttttacaataaaaa 40331210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 253 - 314
Target Start/End: Original strand, 14652753 - 14652814
Alignment:
Q  253 ttaagattttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaag 314  Q
    |||||||||||||||||||||||| ||||||||||||  | |||  ||||||||||||||||    
T  14652753 ttaagattttatcattctctaaaatttcaagtaacacaaaaatatgttttttaaataaaaag 14652814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 391 - 464
Target Start/End: Original strand, 18432552 - 18432625
Alignment:
Q  391 tatgttgcggtttggtttggtttaattatgttgttaaaataacaaccgcaaatcaaaccaaactacgcggttga 464  Q
    ||||||||||||||||||| |||  ||  |||| |||||||| ||||||||| |||||||||||| ||||||||    
T  18432552 tatgttgcggtttggtttgatttggttcggttgataaaataaaaaccgcaaaccaaaccaaactatgcggttga 18432625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 254 - 314
Target Start/End: Complemental strand, 7591266 - 7591206
Alignment:
Q  254 taagattttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaag 314  Q
    ||||||||||||||| |||||||||||||||| ||| || | |||||||| ||||||||||    
T  7591266 taagattttatcattatctaaaagttcaagtagcacataaagacatttttgaaataaaaag 7591206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 498 - 566
Target Start/End: Original strand, 11917918 - 11917986
Alignment:
Q  498 tttttgcagtttcagtttgaattagtttgatttacggtttttctattgggttggtccagttttgaacac 566  Q
    ||||||| ||||| ||||| ||| ||| ||||| ||||||||||||||||||||| | |||||||||||    
T  11917918 tttttgcggtttcggtttggattggttcgatttgcggtttttctattgggttggttcggttttgaacac 11917986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 498 - 566
Target Start/End: Complemental strand, 12680621 - 12680553
Alignment:
Q  498 tttttgcagtttcagtttgaattagtttgatttacggtttttctattgggttggtccagttttgaacac 566  Q
    ||||||| ||||||||||| ||| ||||||||| ||||||||||||||  ||||| | |||||||||||    
T  12680621 tttttgcggtttcagtttggattggtttgatttgcggtttttctattgaattggttcggttttgaacac 12680553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 498 - 566
Target Start/End: Complemental strand, 32520771 - 32520703
Alignment:
Q  498 tttttgcagtttcagtttgaattagtttgatttacggtttttctattgggttggtccagttttgaacac 566  Q
    ||||||| ||||| ||||| ||| ||||| ||| ||||||||||||||||||||| | |||||||||||    
T  32520771 tttttgcggtttcggtttggattggtttggtttgcggtttttctattgggttggttcggttttgaacac 32520703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 498 - 566
Target Start/End: Original strand, 42545918 - 42545986
Alignment:
Q  498 tttttgcagtttcagtttgaattagtttgatttacggtttttctattgggttggtccagttttgaacac 566  Q
    ||||||| |||||  |||| ||| ||||| |||||||||||| |||||||||||| |||||||||||||    
T  42545918 tttttgcggtttcgatttggattggtttggtttacggtttttttattgggttggttcagttttgaacac 42545986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 254 - 316
Target Start/End: Original strand, 18432385 - 18432447
Alignment:
Q  254 taagattttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaagca 316  Q
    ||||| |||||||||||||||||||||||||| ||| ||  || |||||| ||||||||||||    
T  18432385 taagactttatcattctctaaaagttcaagtagcacataactatatttttgaaataaaaagca 18432447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 253 - 303
Target Start/End: Complemental strand, 27571846 - 27571796
Alignment:
Q  253 ttaagattttatcattctctaaaagttcaagtaacacgtagatacattttt 303  Q
    |||||||||||| |||||||||||||||||||| ||| || ||||||||||    
T  27571846 ttaagattttattattctctaaaagttcaagtagcacataaatacattttt 27571796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 253 - 359
Target Start/End: Original strand, 39052851 - 39052957
Alignment:
Q  253 ttaagattttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaagcacataaggaacttatccgtagaaaaaatatataattt 352  Q
    ||||||||||||||| || |||||||||||||| ||| || ||| |||||| |||||||| | | | ||| || ||| |   |||| |||||||||||||    
T  39052851 ttaagattttatcatactataaaagttcaagtagcacataaatatatttttaaaataaaatgtaaagaagaaatttaacaagagaacaaatatataattt 39052950  T
Q  353 tataaaa 359  Q
    |||||||    
T  39052951 tataaaa 39052957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 316
Target Start/End: Original strand, 2589300 - 2589361
Alignment:
Q  255 aagattttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaagca 316  Q
    |||||||||||||||| ||||||||||| |  ||| || |||||||||| ||||||||||||    
T  2589300 aagattttatcattctttaaaagttcaaattgcacataaatacatttttgaaataaaaagca 2589361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 513 - 566
Target Start/End: Complemental strand, 17084417 - 17084364
Alignment:
Q  513 tttgaattagtttgatttacggtttttctattgggttggtccagttttgaacac 566  Q
    |||||||| ||||||||| |||||||| |||||||||||| ||||||| |||||    
T  17084417 tttgaattggtttgatttgcggtttttttattgggttggttcagttttaaacac 17084364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 391 - 464
Target Start/End: Complemental strand, 33901620 - 33901547
Alignment:
Q  391 tatgttgcggtttggtttggtttaattatgttgttaaaataacaaccgcaaatcaaaccaaactacgcggttga 464  Q
    |||||||||||||||||| | || |||| |||| |||||||| ||||||||||  || ||||| ||||||||||    
T  33901620 tatgttgcggtttggtttagattgattaggttggtaaaataaaaaccgcaaattgaatcaaaccacgcggttga 33901547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 498 - 566
Target Start/End: Complemental strand, 2226429 - 2226361
Alignment:
Q  498 tttttgcagtttcagtttgaattagtttgatttacggtttttctattgggttggtccagttttgaacac 566  Q
    ||||||| |||||  ||||||||| ||||||||||| |||||||||||| || || | |||||||||||    
T  2226429 tttttgcggtttcgatttgaattaatttgatttacgatttttctattggatttgttcggttttgaacac 2226361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 498 - 566
Target Start/End: Original strand, 9161518 - 9161586
Alignment:
Q  498 tttttgcagtttcagtttgaattagtttgatttacggtttttctattgggttggtccagttttgaacac 566  Q
    ||||||| ||||||||||| ||| ||||| ||| | ||||||||||||||||||| |  ||||||||||    
T  9161518 tttttgcggtttcagtttggattggtttggtttgcagtttttctattgggttggttcgattttgaacac 9161586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 506 - 566
Target Start/End: Original strand, 10174599 - 10174659
Alignment:
Q  506 gtttcagtttgaattagtttgatttacggtttttctattgggttggtccagttttgaacac 566  Q
    ||||| ||||| ||| ||||| ||| ||||||||||||||||||||| | |||||||||||    
T  10174599 gtttcggtttggattggtttggtttgcggtttttctattgggttggttcggttttgaacac 10174659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 498 - 566
Target Start/End: Original strand, 30002461 - 30002529
Alignment:
Q  498 tttttgcagtttcagtttgaattagtttgatttacggtttttctattgggttggtccagttttgaacac 566  Q
    ||||||| |||||||||||  || ||| | ||| ||||||||||||||||||||| | |||||||||||    
T  30002461 tttttgcggtttcagtttgggttggttcggtttgcggtttttctattgggttggttcggttttgaacac 30002529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 258 - 314
Target Start/End: Original strand, 35727272 - 35727328
Alignment:
Q  258 attttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaag 314  Q
    |||||||||||||||||||||||||||||||  || | | |||||| ||||||||||    
T  35727272 attttatcattctctaaaagttcaagtaacatataaacatatttttgaaataaaaag 35727328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 498 - 566
Target Start/End: Complemental strand, 36176435 - 36176367
Alignment:
Q  498 tttttgcagtttcagtttgaattagtttgatttacggtttttctattgggttggtccagttttgaacac 566  Q
    ||||||| |||||  |||| ||| ||||  ||||||||||||||||||||||||| | |||||||||||    
T  36176435 tttttgcggtttcgatttggattggtttagtttacggtttttctattgggttggttcggttttgaacac 36176367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 312
Target Start/End: Complemental strand, 7487104 - 7487045
Alignment:
Q  253 ttaagattttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaa 312  Q
    |||||||||||||||| ||||||||||||||||  ||  | |||||||||| ||||||||    
T  7487104 ttaagattttatcattttctaaaagttcaagtagtacacaaatacatttttaaaataaaa 7487045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 316
Target Start/End: Original strand, 11402893 - 11402956
Alignment:
Q  254 taagattttatcattctctaaaagttcaagtaacacgtagatac-attttttaaataaaaagca 316  Q
    |||||||||||||||||| |||| |||||||| |||||  ||||  ||||||||||||||||||    
T  11402893 taagattttatcattctcaaaaatttcaagtagcacgtgaatacgtttttttaaataaaaagca 11402956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 478 - 565
Target Start/End: Original strand, 14653000 - 14653087
Alignment:
Q  478 tacatctgaattaaatatgatttttgcagtttcagtttgaattagtttgatttacggtttttctattgggttggtccagttttgaaca 565  Q
    ||||||||||| |||| || ||||||| ||||| ||||| |||  |||| ||| |||||||||||||| |||||| |  |||||||||    
T  14653000 tacatctgaataaaatgtggtttttgcggtttcggtttggattgatttggtttgcggtttttctattgagttggttcgattttgaaca 14653087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 3e-17; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 253 - 359
Target Start/End: Complemental strand, 892131 - 892025
Alignment:
Q  253 ttaagattttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaagcacataaggaacttatccgtagaaaaaatatataattt 352  Q
    ||||||||||||||||||||||||||||||||| ||| || |||||||||| |||||||||| | | ||| |||||| |   |||||||| || | ||||    
T  892131 ttaagattttatcattctctaaaagttcaagtagcacataaatacatttttgaaataaaaagtagagaagaaacttaacaagagaaaaaacatgtcattt 892032  T
Q  353 tataaaa 359  Q
    |||||||    
T  892031 tataaaa 892025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 254 - 359
Target Start/End: Complemental strand, 32190470 - 32190365
Alignment:
Q  254 taagattttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaagcacataaggaacttatccgtagaaaaaatatataatttt 353  Q
    |||||||||||||||||||||||||||||||| | | || |||||||||| |||||||||| | | ||| |||||| |   ||||||||||| | |||||    
T  32190470 taagattttatcattctctaaaagttcaagtagcgcataaatacatttttgaaataaaaagaaaagaagaaacttaacaagagaaaaaatatgtcatttt 32190371  T
Q  354 ataaaa 359  Q
    ||||||    
T  32190370 ataaaa 32190365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 254 - 359
Target Start/End: Original strand, 28633239 - 28633344
Alignment:
Q  254 taagattttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaagcacataaggaacttatccgtagaaaaaatatataatttt 353  Q
    ||||||||||||||| |||||||||| ||||||||| || |||||||||| ||||| |||||| | ||| |||||| |   ||||||||||  | |||||    
T  28633239 taagattttatcattttctaaaagtttaagtaacacataaatacatttttgaaatagaaagcaaaaaagaaacttaacaagagaaaaaatacttcatttt 28633338  T
Q  354 ataaaa 359  Q
    ||||||    
T  28633339 ataaaa 28633344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 254 - 313
Target Start/End: Complemental strand, 19134891 - 19134832
Alignment:
Q  254 taagattttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaa 313  Q
    ||||||||||| |||||||||||||||||||| ||| || |||||||||| |||||||||    
T  19134891 taagattttattattctctaaaagttcaagtagcacataaatacatttttgaaataaaaa 19134832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 498 - 566
Target Start/End: Complemental strand, 35039484 - 35039416
Alignment:
Q  498 tttttgcagtttcagtttgaattagtttgatttacggtttttctattgggttggtccagttttgaacac 566  Q
    ||||||||||||  ||||| ||| ||||| ||| ||||||||||||||||||||| | |||||||||||    
T  35039484 tttttgcagttttggtttggattggtttggtttgcggtttttctattgggttggttcggttttgaacac 35039416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 329
Target Start/End: Original strand, 14564720 - 14564795
Alignment:
Q  254 taagattttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaagcacataaggaactta 329  Q
    |||||||| |||||||| ||||||||||| || ||| || |||||||||| |||||||||||| | ||| ||||||    
T  14564720 taagatttcatcattctttaaaagttcaaatagcacataaatacatttttgaaataaaaagcaaagaagaaactta 14564795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 254 - 359
Target Start/End: Complemental strand, 12108367 - 12108261
Alignment:
Q  254 taagattttatcattctctaaaagttcaagtaacacgtagatacatttttt-aaataaaaagcacataaggaacttatccgtagaaaaaatatataattt 352  Q
    |||||||||||||||||||||||||||||||  ||  || ||||||||||| | ||||||| || | ||| |||||| |   ||||||||||| | ||||    
T  12108367 taagattttatcattctctaaaagttcaagtggcatataaatacattttttgacataaaaatcaaagaagaaacttaacaagagaaaaaatatgtcattt 12108268  T
Q  353 tataaaa 359  Q
    |||||||    
T  12108267 tataaaa 12108261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 253 - 313
Target Start/End: Complemental strand, 13532063 - 13532003
Alignment:
Q  253 ttaagattttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaa 313  Q
    |||||||||||||||||| ||||| |||||||| ||| || |||  |||||||||||||||    
T  13532063 ttaagattttatcattctataaaatttcaagtagcacataaatatgttttttaaataaaaa 13532003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 309
Target Start/End: Original strand, 30752868 - 30752921
Alignment:
Q  256 agattttatcattctctaaaagttcaagtaacacgtagatacattttttaaata 309  Q
    ||||||||||||||||||||| || ||||| ||| || |||||||||| |||||    
T  30752868 agattttatcattctctaaaattttaagtatcacataaatacatttttgaaata 30752921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 3e-17; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 254 - 392
Target Start/End: Original strand, 9330694 - 9330831
Alignment:
Q  254 taagattttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaagcacataaggaacttatccgtagaaaaaatatataatttt 353  Q
    ||||||||||||||||||||||| |||||||||| | ||  |||||||| ||||||||||||| | ||  |||||| |   ||||||||||||| |||||    
T  9330694 taagattttatcattctctaaaatttcaagtaactcatatgtacattttataaataaaaagcaaagaacaaacttaacaaaagaaaaaatatatcatttt 9330793  T
Q  354 ataaaaagtttagattgagttattatgagaattgatcta 392  Q
    || ||||||||  ||||||||  |||||| |||| ||||    
T  9330794 at-aaaagttttcattgagtttctatgagtattggtcta 9330831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 258 - 360
Target Start/End: Original strand, 44056033 - 44056135
Alignment:
Q  258 attttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaagcacataaggaacttatccgtagaaaaaatatataattttataa 357  Q
    ||||||||||| |||||||||||||||| ||| || |||||||||| ||||| |||||| | || ||||||| |   ||||||||||||| |||||||||    
T  44056033 attttatcattttctaaaagttcaagtagcacataaatacatttttgaaatataaagcaaagaatgaacttaacaagagaaaaaatatatcattttataa 44056132  T
Q  358 aaa 360  Q
    |||    
T  44056133 aaa 44056135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 255 - 359
Target Start/End: Complemental strand, 36203235 - 36203131
Alignment:
Q  255 aagattttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaagcacataaggaacttatccgtagaaaaaatatataatttta 354  Q
    |||||||||||||||| |||||||||||||| ||| || |||||||||| |||||||||||| | ||| |||||| |   |||| |||||| | ||||||    
T  36203235 aagattttatcattctataaaagttcaagtagcacataaatacatttttgaaataaaaagcaaagaagaaacttaacaagagaacaaatatgtcatttta 36203136  T
Q  355 taaaa 359  Q
    |||||    
T  36203135 taaaa 36203131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 254 - 329
Target Start/End: Complemental strand, 8165330 - 8165255
Alignment:
Q  254 taagattttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaagcacataaggaactta 329  Q
    ||||||||||||||| ||||| |||||||||| ||| || |||| ||||| |||||||||||| | ||||||||||    
T  8165330 taagattttatcattatctaagagttcaagtagcacataaatacgtttttgaaataaaaagcaaagaaggaactta 8165255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 498 - 566
Target Start/End: Complemental strand, 33910322 - 33910254
Alignment:
Q  498 tttttgcagtttcagtttgaattagtttgatttacggtttttctattgggttggtccagttttgaacac 566  Q
    |||||||  |||| ||||| ||| ||||||||| ||||||||||||||||||||| | |||||||||||    
T  33910322 tttttgcgatttcggtttggattggtttgatttgcggtttttctattgggttggttcggttttgaacac 33910254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 329
Target Start/End: Complemental strand, 10847314 - 10847239
Alignment:
Q  254 taagattttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaagcacataaggaactta 329  Q
    ||||||||||||||| |  |||||||||| || |||||| |||||||||| |||||||||||| | ||| ||||||    
T  10847314 taagattttatcatttttgaaaagttcaaatagcacgtaaatacatttttgaaataaaaagcaaagaagaaactta 10847239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 345
Target Start/End: Original strand, 17652041 - 17652132
Alignment:
Q  254 taagattttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaagcacataaggaacttatccgtagaaaaaatat 345  Q
    ||||||||||| |||||||||||||||||||| |||  | |||||||||| ||||||||| || | ||| |||||| |   |||||||||||    
T  17652041 taagattttattattctctaaaagttcaagtagcacaaaaatacatttttgaaataaaaaacaaagaagaaacttaacgaaagaaaaaatat 17652132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 253 - 303
Target Start/End: Complemental strand, 9961973 - 9961923
Alignment:
Q  253 ttaagattttatcattctctaaaagttcaagtaacacgtagatacattttt 303  Q
    ||||||||||||||||||||||||||||||||| ||| || ||||| ||||    
T  9961973 ttaagattttatcattctctaaaagttcaagtagcacataaatacactttt 9961923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 359
Target Start/End: Complemental strand, 9249877 - 9249772
Alignment:
Q  254 taagattttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaagcacataaggaacttatccgtagaaaaaatatataatttt 353  Q
    |||||||||||| ||  |||||||| |||||||||| || |||||||||| |||||||||  | | ||| |||||| |   ||||||||||| | |||||    
T  9249877 taagattttatcgttaactaaaagtacaagtaacacataaatacatttttgaaataaaaaataaagaagaaacttaacaagagaaaaaatatgtcatttt 9249778  T
Q  354 ataaaa 359  Q
    ||||||    
T  9249777 ataaaa 9249772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 314
Target Start/End: Original strand, 17989339 - 17989400
Alignment:
Q  253 ttaagattttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaag 314  Q
    ||||||| |||||||||| |||||||||||||| ||| || ||| |||||| ||||||||||    
T  17989339 ttaagatgttatcattctataaaagttcaagtagcacataaatatatttttgaaataaaaag 17989400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 298
Target Start/End: Complemental strand, 29923098 - 29923053
Alignment:
Q  253 ttaagattttatcattctctaaaagttcaagtaacacgtagataca 298  Q
    |||||||||||||||||| |||||||||||||||||| || |||||    
T  29923098 ttaagattttatcattctttaaaagttcaagtaacacataaataca 29923053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 316
Target Start/End: Original strand, 34914432 - 34914489
Alignment:
Q  259 ttttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaagca 316  Q
    |||||| ||||||||| |||||||||| ||| || |||||||||||||| ||||||||    
T  34914432 ttttattattctctaagagttcaagtagcacataaatacattttttaaagaaaaagca 34914489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 314
Target Start/End: Complemental strand, 36782152 - 36782099
Alignment:
Q  261 ttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaag 314  Q
    |||||||||||||| ||||||||||| || || |||||||||||||| ||||||    
T  36782152 ttatcattctctaagagttcaagtaatacataaatacattttttaaagaaaaag 36782099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 213
Target Start/End: Complemental strand, 39158197 - 39158132
Alignment:
Q  148 caacattacattttcattgacatccaacgatgttcacaacaatataaaccaaattaaaaacatgga 213  Q
    |||||||||| |||||||  |||| ||| |||||| |||||| ||||||||||||||||| |||||    
T  39158197 caacattacaatttcattttcatctaacaatgttcccaacaacataaaccaaattaaaaagatgga 39158132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 498 - 566
Target Start/End: Complemental strand, 5154953 - 5154885
Alignment:
Q  498 tttttgcagtttcagtttgaattagtttgatttacggtttttctattgggttggtccagttttgaacac 566  Q
    ||||||| ||||| ||||| ||| ||| | ||| ||||||||||||||||||||| | |||||||||||    
T  5154953 tttttgcggtttcggtttggattggttcggtttgcggtttttctattgggttggttcggttttgaacac 5154885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 498 - 566
Target Start/End: Original strand, 8211743 - 8211811
Alignment:
Q  498 tttttgcagtttcagtttgaattagtttgatttacggtttttctattgggttggtccagttttgaacac 566  Q
    ||||||| ||||| ||||| ||| ||| | ||| ||||||||||||||||||||| | |||||||||||    
T  8211743 tttttgcggtttcggtttggattggttcggtttgcggtttttctattgggttggttcggttttgaacac 8211811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 498 - 566
Target Start/End: Complemental strand, 11072878 - 11072810
Alignment:
Q  498 tttttgcagtttcagtttgaattagtttgatttacggtttttctattgggttggtccagttttgaacac 566  Q
    ||||||||||||| ||||| ||| ||| | ||| |||||||||||||||||||||   |||||||||||    
T  11072878 tttttgcagtttcggtttggattggttcggtttgcggtttttctattgggttggtttggttttgaacac 11072810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 254 - 314
Target Start/End: Complemental strand, 11073157 - 11073097
Alignment:
Q  254 taagattttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaag 314  Q
    |||||| |||||||||||||||| || ||||| ||| || |||| ||||||||||||||||    
T  11073157 taagatgttatcattctctaaaatttgaagtagcacataaatacgttttttaaataaaaag 11073097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 253 - 345
Target Start/End: Complemental strand, 35980062 - 35979970
Alignment:
Q  253 ttaagattttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaagcacataaggaacttatccgtagaaaaaatat 345  Q
    |||| ||||||| |||||||||||||||||||| ||| || ||||  |||| |||||||||||| | ||| |||||| |   |||||||||||    
T  35980062 ttaatattttattattctctaaaagttcaagtagcacataaataccattttgaaataaaaagcaaagaagaaacttaacaagagaaaaaatat 35979970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 254 - 314
Target Start/End: Complemental strand, 35992384 - 35992324
Alignment:
Q  254 taagattttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaag 314  Q
    ||||||||||| |||||||||||||||||||| ||| || ||||  |||| ||||||||||    
T  35992384 taagattttattattctctaaaagttcaagtagcacataaataccattttgaaataaaaag 35992324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 425 - 473
Target Start/End: Original strand, 52829285 - 52829333
Alignment:
Q  425 taaaataacaaccgcaaatcaaaccaaactacgcggttgagtaagaaat 473  Q
    |||||||| ||| ||||||| ||||||||||||||||||||||| ||||    
T  52829285 taaaataaaaactgcaaatcgaaccaaactacgcggttgagtaaaaaat 52829333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 313
Target Start/End: Complemental strand, 32910157 - 32910098
Alignment:
Q  254 taagattttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaa 313  Q
    ||||||||| ||||||||||||| |||||||| ||| || |||  |||||||||||||||    
T  32910157 taagattttctcattctctaaaatttcaagtagcacataaatatgttttttaaataaaaa 32910098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 364
Target Start/End: Complemental strand, 23474888 - 23474780
Alignment:
Q  254 taagattttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaagcacataaggaacttatccgtagaaaaaatatataatttt 353  Q
    ||||||||||||||| |||||||  ||||||||||| || |||||||||  ||||||||| || | ||| || ||| |   ||||||||||| | |||||    
T  23474888 taagattttatcatt-tctaaaatctcaagtaacacataaatacatttta-aaataaaaatcaaagaagaaaattaacaagagaaaaaatatgtcatttt 23474791  T
Q  354 ataaaaagttt 364  Q
    |||||||||||    
T  23474790 ataaaaagttt 23474780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 313
Target Start/End: Original strand, 41751516 - 41751574
Alignment:
Q  255 aagattttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaa 313  Q
    |||| ||||||||||||||||| |||||||| || ||| |||||||||| |||| ||||    
T  41751516 aagactttatcattctctaaaaattcaagtagcatgtaaatacatttttgaaattaaaa 41751574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 307
Target Start/End: Complemental strand, 25865797 - 25865748
Alignment:
Q  258 attttatcattctctaaaagttcaagtaacacgtagatacattttttaaa 307  Q
    ||||||||||||||||| | |||||||| ||| || ||||||||||||||    
T  25865797 attttatcattctctaacatttcaagtagcacataaatacattttttaaa 25865748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 391 - 468
Target Start/End: Complemental strand, 36203068 - 36202991
Alignment:
Q  391 tatgttgcggtttggtttggtttaattatgttgttaaaataacaaccgcaaatcaaaccaaactacgcggttgagtaa 468  Q
    ||||||||||||||||||||| |  ||  |||| |||||| | | ||||||| |||||||||| | ||||||||||||    
T  36203068 tatgttgcggtttggtttggtatggttcggttggtaaaatgaaagccgcaaaccaaaccaaaccatgcggttgagtaa 36202991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 391 - 472
Target Start/End: Complemental strand, 39157929 - 39157848
Alignment:
Q  391 tatgttgcggtttggtttggtttaattatgttgttaaaataacaaccgcaaatcaaaccaaactacgcggttgagtaagaaa 472  Q
    |||||||||||||| ||||||||  ||  |||| |||||||| |||| |||| ||||| ||||||  | |||||||||||||    
T  39157929 tatgttgcggtttgatttggtttggttcggttgataaaataaaaaccacaaaccaaactaaactatacagttgagtaagaaa 39157848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 391 - 472
Target Start/End: Original strand, 44056196 - 44056277
Alignment:
Q  391 tatgttgcggtttggtttggtttaattatgttgttaaaataacaaccgcaaatcaaaccaaactacgcggttgagtaagaaa 472  Q
    |||||||| ||||||||||||||  ||  |||| |||||| | |||||||||   |||||||| | ||||||||||||||||    
T  44056196 tatgttgcagtttggtttggtttggttcagttggtaaaatgaaaaccgcaaacataaccaaaccatgcggttgagtaagaaa 44056277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 393 - 450
Target Start/End: Complemental strand, 45949153 - 45949096
Alignment:
Q  393 tgttgcggtttggtttggtttaattatgttgttaaaataacaaccgcaaatcaaacca 450  Q
    ||||||||||| |||||||||  ||  |||| |||||||| |||||||||||||||||    
T  45949153 tgttgcggttttgtttggtttggttcggttggtaaaataaaaaccgcaaatcaaacca 45949096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 1e-16; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 253 - 358
Target Start/End: Original strand, 30855390 - 30855495
Alignment:
Q  253 ttaagattttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaagcacataaggaacttatccgtagaaaaaatatataattt 352  Q
    |||||||||||||||||||||||||||| |||||||| || |||| ||||| |||||||||||| | || |||||||     ||||||||||| | ||||    
T  30855390 ttaagattttatcattctctaaaagttcgagtaacacataaatacgtttttaaaataaaaagcaaagaaagaacttaaggagagaaaaaatatgtcattt 30855489  T
Q  353 tataaa 358  Q
    ||||||    
T  30855490 tataaa 30855495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 391 - 566
Target Start/End: Complemental strand, 31011380 - 31011204
Alignment:
Q  391 tatgttgcggtttggtttggtttaattatgttgttaaaataacaaccgcaaatcaaaccaaactacgcggttgagtaagaaat-----taaatacatctg 485  Q
    |||||||||||||||||| ||||      |||| |||||||| |||| |||| |  ||||||| ||||||||||||||||||      | |||||||| |    
T  31011380 tatgttgcggtttggtttcgtttg-----gttggtaaaataaaaacctcaaaccgcaccaaaccacgcggttgagtaagaaaacgatctgaatacatccg 31011286  T
Q  486 aattaaatatgattttt-gcagtttcagtttgaattagtttgatttacggtttttctattgggttggtccagttttgaacac 566  Q
    ||  ||||| | ||||| |||||||||||||||||| ||||| ||| ||||||||||||||| ||||| | |||||||||||    
T  31011285 aaccaaataaggttttttgcagtttcagtttgaattggtttggtttgcggtttttctattggattggttcggttttgaacac 31011204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 498 - 566
Target Start/End: Original strand, 36509169 - 36509237
Alignment:
Q  498 tttttgcagtttcagtttgaattagtttgatttacggtttttctattgggttggtccagttttgaacac 566  Q
    ||||||||||||| ||||||||| ||||| ||| ||||||||||||||||||||| | |||||||||||    
T  36509169 tttttgcagtttcggtttgaattggtttggtttgcggtttttctattgggttggttcggttttgaacac 36509237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 258 - 329
Target Start/End: Original strand, 40849156 - 40849227
Alignment:
Q  258 attttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaagcacataaggaactta 329  Q
    |||||||||||||||||||||||||| ||||| || |||||||||| |||||||||||| | ||| ||||||    
T  40849156 attttatcattctctaaaagttcaaggaacacataaatacatttttgaaataaaaagcaaaaaagaaactta 40849227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 258 - 359
Target Start/End: Complemental strand, 524651 - 524550
Alignment:
Q  258 attttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaagcacataaggaacttatccgtagaaaaaatatataattttataa 357  Q
    ||||||| ||||||||||||| |||||| ||  || |||||||||| |||||||||||| | ||| |||||| |  |||||||||||| | |||||||||    
T  524651 attttattattctctaaaagtccaagtagcatataaatacatttttgaaataaaaagcaaagaagaaacttaacaatagaaaaaatatgttattttataa 524552  T
Q  358 aa 359  Q
    ||    
T  524551 aa 524550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 254 - 307
Target Start/End: Original strand, 2734632 - 2734685
Alignment:
Q  254 taagattttatcattctctaaaagttcaagtaacacgtagatacattttttaaa 307  Q
    ||||||||||||||||||||||||||||| || |||||| ||| ||||||||||    
T  2734632 taagattttatcattctctaaaagttcaattagcacgtaaatatattttttaaa 2734685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 263 - 316
Target Start/End: Original strand, 27456631 - 27456684
Alignment:
Q  263 atcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaagca 316  Q
    ||||||||||||||||| ||||| ||| || |||||||||||||||||||||||    
T  27456631 atcattctctaaaagtttaagtagcacataaatacattttttaaataaaaagca 27456684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 391 - 468
Target Start/End: Original strand, 40849321 - 40849398
Alignment:
Q  391 tatgttgcggtttggtttggtttaattatgttgttaaaataacaaccgcaaatcaaaccaaactacgcggttgagtaa 468  Q
    |||||||||||||||||||||||  ||  |||| |||||| | ||||||||| |||||||||| | ||||||||||||    
T  40849321 tatgttgcggtttggtttggtttggttcggttggtaaaatgaaaaccgcaaaccaaaccaaaccatgcggttgagtaa 40849398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 498 - 566
Target Start/End: Complemental strand, 36921102 - 36921034
Alignment:
Q  498 tttttgcagtttcagtttgaattagtttgatttacggtttttctattgggttggtccagttttgaacac 566  Q
    |||||| |||||| ||||| ||| ||||| ||| ||||||||||||||||||||| | |||||||||||    
T  36921102 tttttgtagtttcggtttggattggtttggtttgcggtttttctattgggttggttcggttttgaacac 36921034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 498 - 566
Target Start/End: Complemental strand, 42910227 - 42910159
Alignment:
Q  498 tttttgcagtttcagtttgaattagtttgatttacggtttttctattgggttggtccagttttgaacac 566  Q
    |||||||||||||  |||| ||| ||||| ||| ||||||||||||||||||||| | |||||||||||    
T  42910227 tttttgcagtttcgatttggattggtttggtttgcggtttttctattgggttggttcggttttgaacac 42910159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 498 - 566
Target Start/End: Original strand, 43429705 - 43429773
Alignment:
Q  498 tttttgcagtttcagtttgaattagtttgatttacggtttttctattgggttggtccagttttgaacac 566  Q
    ||||||| ||||| ||||| ||| ||||| ||| ||||||||||||||||||||| | |||||||||||    
T  43429705 tttttgcggtttcggtttggattggtttggtttgcggtttttctattgggttggttcggttttgaacac 43429773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 498 - 566
Target Start/End: Complemental strand, 45898101 - 45898033
Alignment:
Q  498 tttttgcagtttcagtttgaattagtttgatttacggtttttctattgggttggtccagttttgaacac 566  Q
    ||||||| ||||| ||||| ||| ||||| ||| ||||||||||||||||||||| | |||||||||||    
T  45898101 tttttgcggtttcggtttggatttgtttggtttgcggtttttctattgggttggttcggttttgaacac 45898033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 313
Target Start/End: Complemental strand, 6879884 - 6879825
Alignment:
Q  254 taagattttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaa 313  Q
    ||||||||||||||||||||||| ||||||||||||||| | | ||| || |||||||||    
T  6879884 taagattttatcattctctaaaaattcaagtaacacgtaaaaatattgttgaaataaaaa 6879825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 289
Target Start/End: Complemental strand, 7528986 - 7528951
Alignment:
Q  254 taagattttatcattctctaaaagttcaagtaacac 289  Q
    ||||||||||||||||||||||||||||||||||||    
T  7528986 taagattttatcattctctaaaagttcaagtaacac 7528951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 256 - 315
Target Start/End: Complemental strand, 17493174 - 17493116
Alignment:
Q  256 agattttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaagc 315  Q
    |||||||||||||||||||||||||||||| | | || | ||||||||||||||||||||    
T  17493174 agattttatcattctctaaaagttcaagtagctc-taaacacattttttaaataaaaagc 17493116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 256 - 315
Target Start/End: Original strand, 17560040 - 17560098
Alignment:
Q  256 agattttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaagc 315  Q
    |||||||||||||||||||||||||||||| | | || | ||||||||||||||||||||    
T  17560040 agattttatcattctctaaaagttcaagtagctc-taaacacattttttaaataaaaagc 17560098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 359
Target Start/End: Original strand, 43202716 - 43202815
Alignment:
Q  260 tttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaagcacataaggaacttatccgtagaaaaaatatataattttataaaa 359  Q
    ||||| |||||||||||||||||||| ||| || |||||||||| |||||||||| | | ||| |||||| |   ||||||||||| | ||| |||||||    
T  43202716 tttattattctctaaaagttcaagtagcacataaatacatttttgaaataaaaagtaaagaagaaacttaacaagagaaaaaatatgttattatataaaa 43202815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 391 - 465
Target Start/End: Complemental strand, 524488 - 524414
Alignment:
Q  391 tatgttgcggtttggtttggtttaattatgttgttaaaataacaaccgcaaatcaaaccaaactacgcggttgag 465  Q
    |||||||||||||||||||||||  ||  |||| |||||| | ||||||||| |||||||||| | |||||||||    
T  524488 tatgttgcggtttggtttggtttggttcggttggtaaaatgaaaaccgcaaaccaaaccaaaccatgcggttgag 524414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 498 - 564
Target Start/End: Original strand, 13852843 - 13852909
Alignment:
Q  498 tttttgcagtttcagtttgaattagtttgatttacggtttttctattgggttggtccagttttgaac 564  Q
    ||||||| |||||| ||||  || ||||| ||| ||||||||||||||||||||| |||||||||||    
T  13852843 tttttgcggtttcaatttggtttggtttggtttgcggtttttctattgggttggttcagttttgaac 13852909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 506 - 564
Target Start/End: Original strand, 37376338 - 37376396
Alignment:
Q  506 gtttcagtttgaattagtttgatttacggtttttctattgggttggtccagttttgaac 564  Q
    ||||| |||||||||  || ||||||| ||||||||||||||||||| |||||||||||    
T  37376338 gtttcggtttgaattgtttcgatttacagtttttctattgggttggttcagttttgaac 37376396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 314
Target Start/End: Original strand, 23032976 - 23033036
Alignment:
Q  253 ttaagattttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaag 314  Q
    |||||||||||||||||||| |||||||||||| ||| || ||| |||||| ||||||||||    
T  23032976 ttaagattttatcattctct-aaagttcaagtagcacataaatatatttttgaaataaaaag 23033036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 498 - 566
Target Start/End: Complemental strand, 8768276 - 8768208
Alignment:
Q  498 tttttgcagtttcagtttgaattagtttgatttacggtttttctattgggttggtccagttttgaacac 566  Q
    ||||||| ||||| ||||| ||| ||| | ||| ||||||||||||||||||||| | |||||||||||    
T  8768276 tttttgcggtttcggtttggattggttcggtttgcggtttttctattgggttggttcggttttgaacac 8768208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 498 - 566
Target Start/End: Complemental strand, 11205988 - 11205920
Alignment:
Q  498 tttttgcagtttcagtttgaattagtttgatttacggtttttctattgggttggtccagttttgaacac 566  Q
    ||||||| ||||| ||||| ||| ||| | ||| ||||||||||||||||||||| | |||||||||||    
T  11205988 tttttgcggtttcggtttggattggttcggtttgcggtttttctattgggttggttcggttttgaacac 11205920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 316
Target Start/End: Original strand, 11399420 - 11399479
Alignment:
Q  256 agattttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaagca 316  Q
    ||||||||||||||||||||||||||||||  || || |||||||||  ||||||||||||    
T  11399420 agattttatcattctctaaaagttcaagtagaacata-atacattttagaaataaaaagca 11399479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 498 - 566
Target Start/End: Original strand, 22366977 - 22367045
Alignment:
Q  498 tttttgcagtttcagtttgaattagtttgatttacggtttttctattgggttggtccagttttgaacac 566  Q
    ||||||| |||||  |||| ||| ||||||||| |||||||| |||||||||||| | |||||||||||    
T  22366977 tttttgcggtttcgatttggattggtttgatttgcggtttttttattgggttggttcggttttgaacac 22367045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 498 - 566
Target Start/End: Complemental strand, 47204077 - 47204009
Alignment:
Q  498 tttttgcagtttcagtttgaattagtttgatttacggtttttctattgggttggtccagttttgaacac 566  Q
    ||||||| ||||| ||||| ||| ||| | ||| ||||||||||||||||||||| | |||||||||||    
T  47204077 tttttgcggtttcggtttggattggttcggtttgcggtttttctattgggttggttcggttttgaacac 47204009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 329
Target Start/End: Original strand, 46147506 - 46147581
Alignment:
Q  254 taagattttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaagcacataaggaactta 329  Q
    ||||||||||| ||| |||||||||||||| | ||| || ||| ||||||| ||||||||||| | ||| ||||||    
T  46147506 taagattttattattgtctaaaagttcaagcagcacataaatatattttttgaataaaaagcaaagaagaaactta 46147581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 499 - 561
Target Start/End: Complemental strand, 22700856 - 22700794
Alignment:
Q  499 ttttgcagtttcagtttgaattagtttgatttacggtttttctattgggttggtccagttttg 561  Q
    |||||| |||| | |||||||| ||||| |||||||||||| |||||| ||||| ||||||||    
T  22700856 ttttgcggttttaatttgaatttgtttggtttacggtttttttattggattggttcagttttg 22700794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 303
Target Start/End: Original strand, 23675672 - 23675722
Alignment:
Q  253 ttaagattttatcattctctaaaagttcaagtaacacgtagatacattttt 303  Q
    |||||||||||||||||||||||||||||| || ||  || ||||||||||    
T  23675672 ttaagattttatcattctctaaaagttcaaatagcatataaatacattttt 23675722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000007; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 258 - 396
Target Start/End: Original strand, 28441769 - 28441906
Alignment:
Q  258 attttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaagcacataaggaacttatccgtagaaaaaatatataattttataa 357  Q
    ||||||||||| |||||||||||||||| ||| || |  ||||||| ||||||||| || | ||| |||||| |   ||||| ||||| | ||||||| |    
T  28441769 attttatcattatctaaaagttcaagtagcacataaaaccatttttgaaataaaaaacaaagaagaaacttaacaaaagaaagaatatgtcattttat-a 28441867  T
Q  358 aaagtttagattgagttattatgagaattgatctatgtt 396  Q
    |||||||  |||||||| ||||||| |||||||||||||    
T  28441868 aaagttttcattgagtttttatgagtattgatctatgtt 28441906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 260 - 312
Target Start/End: Complemental strand, 15452447 - 15452395
Alignment:
Q  260 tttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaa 312  Q
    |||||||||||||||||||||||||| |||||| |||||||||| ||||||||    
T  15452447 tttatcattctctaaaagttcaagtagcacgtaaatacatttttgaaataaaa 15452395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 257 - 316
Target Start/End: Complemental strand, 14185655 - 14185596
Alignment:
Q  257 gattttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaagca 316  Q
    ||||||||||||||||||||||| ||||||||| || |||||||||| |||||| |||||    
T  14185655 gattttatcattctctaaaagtttaagtaacacataaatacatttttgaaataacaagca 14185596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 254 - 360
Target Start/End: Original strand, 40436733 - 40436839
Alignment:
Q  254 taagattttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaagcacataaggaacttatccgtagaaaaaatatataatttt 353  Q
    ||||||||||||||||||||||| || || || ||| || |||| |||||||||||||||||| | ||||||  || |   ||||||||||| | |||||    
T  40436733 taagattttatcattctctaaaattttaaatagcacataaatacgttttttaaataaaaagcaaagaaggaatctaacaaaagaaaaaatatgtcatttt 40436832  T
Q  354 ataaaaa 360  Q
    |||||||    
T  40436833 ataaaaa 40436839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 498 - 552
Target Start/End: Original strand, 44673261 - 44673315
Alignment:
Q  498 tttttgcagtttcagtttgaattagtttgatttacggtttttctattgggttggt 552  Q
    |||||||||||| |||||||||| |||||||||||| ||||||||||| ||||||    
T  44673261 tttttgcagttttagtttgaattggtttgatttacgatttttctattgagttggt 44673315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 498 - 566
Target Start/End: Original strand, 27675088 - 27675156
Alignment:
Q  498 tttttgcagtttcagtttgaattagtttgatttacggtttttctattgggttggtccagttttgaacac 566  Q
    ||||||| ||||| |||||  |||||| ||||| ||| ||||||||||||||||| |||||||||||||    
T  27675088 tttttgcggtttcggtttgggttagttcgatttgcggcttttctattgggttggttcagttttgaacac 27675156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 256 - 316
Target Start/End: Original strand, 41346208 - 41346268
Alignment:
Q  256 agattttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaagca 316  Q
    ||||||||||| | ||||||| |||||||||||| || |||||||||| ||||||||||||    
T  41346208 agattttatcactatctaaaaattcaagtaacacataaatacatttttaaaataaaaagca 41346268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 254 - 312
Target Start/End: Original strand, 28801866 - 28801924
Alignment:
Q  254 taagattttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaa 312  Q
    |||| |||||||||||||||||||||||| |||||  || |||||||||| ||||||||    
T  28801866 taaggttttatcattctctaaaagttcaattaacatataaatacatttttaaaataaaa 28801924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 513 - 566
Target Start/End: Original strand, 3682465 - 3682518
Alignment:
Q  513 tttgaattagtttgatttacggtttttctattgggttggtccagttttgaacac 566  Q
    |||| ||| ||||||||| ||||||||||||||||||||| | |||||||||||    
T  3682465 tttggattggtttgatttgcggtttttctattgggttggttcggttttgaacac 3682518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 506 - 567
Target Start/End: Original strand, 10661682 - 10661743
Alignment:
Q  506 gtttcagtttgaattagtttgatttacggtttttctattgggttggtccagttttgaacaca 567  Q
    ||||||||||| ||| ||||| ||| ||||||||||||| ||||||| | ||||||||||||    
T  10661682 gtttcagtttggattggtttggtttgcggtttttctattaggttggttcggttttgaacaca 10661743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 359
Target Start/End: Original strand, 27674815 - 27674920
Alignment:
Q  254 taagattttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaagcacataaggaacttatccgtagaaaaaatatataatttt 353  Q
    |||||||||||||||||  ||||||||||||| ||| || ||||  |||| |||||||||||| | || |||||||     ||||||||||| | |||||    
T  27674815 taagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcatttt 27674914  T
Q  354 ataaaa 359  Q
    ||||||    
T  27674915 ataaaa 27674920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 498 - 566
Target Start/End: Original strand, 14549760 - 14549828
Alignment:
Q  498 tttttgcagtttcagtttgaattagtttgatttacggtttttctattgggttggtccagttttgaacac 566  Q
    ||||||| ||||| ||||| ||| ||||| ||||| ||||||||||||||||||| | ||||| |||||    
T  14549760 tttttgcggtttcggtttggattggtttggtttacagtttttctattgggttggttcggttttaaacac 14549828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 496 - 566
Target Start/End: Complemental strand, 3006185 - 3006115
Alignment:
Q  496 gatttttgcagtttcagtttgaattagtttgatttacggtttttctattgggttggtccagttttgaacac 566  Q
    ||||||||| ||||| |||||  || ||| | ||| ||||||||||||||||||||| | |||||||||||    
T  3006185 gatttttgctgtttcggtttgggttggttcggtttgcggtttttctattgggttggttcggttttgaacac 3006115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 329
Target Start/End: Complemental strand, 3129423 - 3129361
Alignment:
Q  267 ttctctaaaagttcaagtaacacgtagatacattttttaaataaaaagcacataaggaactta 329  Q
    ||||||||||||||||||| ||| || |||||||||| |||||||| ||| | ||| ||||||    
T  3129423 ttctctaaaagttcaagtagcacataaatacatttttgaaataaaatgcaaagaagaaactta 3129361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 390 - 472
Target Start/End: Complemental strand, 12659891 - 12659809
Alignment:
Q  390 ctatgttgcggtttggtttggtttaattatgttgttaaaataacaaccgcaaatcaaaccaaactacgcggttgagtaagaaa 472  Q
    |||||||| |||||||||||||||  ||  |||| |||||||  |||||||||   |||||||| | ||||||||||||||||    
T  12659891 ctatgttgtggtttggtttggtttggttcggttggtaaaatagaaaccgcaaactgaaccaaaccatgcggttgagtaagaaa 12659809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 299
Target Start/End: Complemental strand, 9012622 - 9012577
Alignment:
Q  254 taagattttatcattctctaaaagttcaagtaacacgtagatacat 299  Q
    |||||||||||||||||||||||||| ||||| ||| || ||||||    
T  9012622 taagattttatcattctctaaaagtttaagtagcacataaatacat 9012577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 513 - 566
Target Start/End: Complemental strand, 42496441 - 42496388
Alignment:
Q  513 tttgaattagtttgatttacggtttttctattgggttggtccagttttgaacac 566  Q
    ||||||||| ||||||||| ||||||| ||||||||| || | |||||||||||    
T  42496441 tttgaattaatttgatttatggtttttttattgggttagttcggttttgaacac 42496388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 134
Target Start/End: Complemental strand, 31055 - 30934
Alignment:
Q  13 agcacagaccaccaacacaaacggttccaaacgcgcttgaattctgatcaagggatga-tccaacacacgttagtaaccaaacagcccttacgggttaaa 111  Q
    |||||| ||||||||||||| | ||| || ||| |  |||| || ||||| ||||||| || |||||||||||||||||||||| ||||||  ||||  |    
T  31055 agcacaaaccaccaacacaaccagtttcagacgtgtctgaactcagatcatgggatgagtctaacacacgttagtaaccaaacaacccttataggtt-ta 30957  T
Q  112 aagaaccataccctttggggttt 134  Q
    |||||||||||||||| ||||||    
T  30956 aagaaccataccctttcgggttt 30934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0664 (Bit Score: 38; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0664
Description:

Target: scaffold0664; HSP #1
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 253 - 314
Target Start/End: Original strand, 6276 - 6337
Alignment:
Q  253 ttaagattttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaag 314  Q
    ||||||||||||||||||||||||||||||||||||| || | | |||||  ||||||||||    
T  6276 ttaagattttatcattctctaaaagttcaagtaacacataaaaatattttagaaataaaaag 6337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0688 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0688
Description:

Target: scaffold0688; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 391 - 453
Target Start/End: Original strand, 1641 - 1703
Alignment:
Q  391 tatgttgcggtttggtttggtttaattatgttgttaaaataacaaccgcaaatcaaaccaaac 453  Q
    ||||||| ||||||||||||||| |||  |||| |||||||| ||||||||| ||||||||||    
T  1641 tatgttgtggtttggtttggtttgattcggttggtaaaataaaaaccgcaaaccaaaccaaac 1703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 359
Target Start/End: Original strand, 427940 - 428046
Alignment:
Q  253 ttaagattttatcattctctaaaagttcaagtaacacgtagatacattttttaaataaaaagcacataaggaacttatccgtagaaaaaatatataattt 352  Q
    |||||||||||||||||||||| | |||  ||||||| || ||| |||||| ||||||||||   | ||| |||||| |   ||||||||||| | ||||    
T  427940 ttaagattttatcattctctaacaattcttgtaacacataaatatatttttgaaataaaaaggcaagaagaaacttaacaagagaaaaaatatgtcattt 428039  T
Q  353 tataaaa 359  Q
    |||||||    
T  428040 tataaaa 428046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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