View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3470_low_13 (Length: 521)

Name: NF3470_low_13
Description: NF3470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3470_low_13
NF3470_low_13
[»] chr2 (5 HSPs)
chr2 (1-511)||(13112033-13112546)
chr2 (84-187)||(18038644-18038748)
chr2 (317-412)||(42256342-42256437)
chr2 (48-106)||(12061247-12061305)
chr2 (84-166)||(27483842-27483924)
[»] chr4 (9 HSPs)
chr4 (351-508)||(23865971-23866132)
chr4 (350-508)||(12236182-12236344)
chr4 (123-186)||(4415369-4415432)
chr4 (358-506)||(12191080-12191231)
chr4 (361-415)||(17651271-17651325)
chr4 (84-142)||(19053571-19053629)
chr4 (110-175)||(13977063-13977128)
chr4 (468-508)||(12606467-12606507)
chr4 (468-500)||(27940853-27940885)
[»] chr1 (9 HSPs)
chr1 (39-181)||(35896408-35896550)
chr1 (339-508)||(35896036-35896209)
chr1 (84-215)||(19227727-19227859)
chr1 (327-504)||(19960225-19960404)
chr1 (345-508)||(29076822-29076989)
chr1 (371-488)||(20619698-20619819)
chr1 (333-428)||(1616312-1616407)
chr1 (317-420)||(17316345-17316448)
chr1 (371-412)||(12893277-12893318)
[»] scaffold0329 (2 HSPs)
scaffold0329 (86-188)||(4612-4714)
scaffold0329 (358-504)||(4286-4434)
[»] chr8 (6 HSPs)
chr8 (304-500)||(33925453-33925653)
chr8 (319-412)||(23584864-23584957)
chr8 (84-187)||(19712014-19712117)
chr8 (349-412)||(26576672-26576735)
chr8 (362-412)||(34062327-34062377)
chr8 (361-409)||(25724657-25724705)
[»] chr7 (7 HSPs)
chr7 (84-187)||(28981498-28981600)
chr7 (327-450)||(28981216-28981335)
chr7 (343-409)||(1767589-1767656)
chr7 (457-511)||(1767483-1767537)
chr7 (350-406)||(7560993-7561049)
chr7 (358-394)||(20095117-20095153)
chr7 (143-187)||(20095352-20095396)
[»] chr5 (5 HSPs)
chr5 (343-508)||(37390211-37390380)
chr5 (333-433)||(36740351-36740452)
chr5 (101-197)||(16791528-16791624)
chr5 (468-502)||(16791189-16791223)
chr5 (123-189)||(37390556-37390622)
[»] chr3 (9 HSPs)
chr3 (84-188)||(5797951-5798055)
chr3 (362-511)||(31779589-31779742)
chr3 (361-412)||(14427215-14427266)
chr3 (18-142)||(9796527-9796649)
chr3 (469-508)||(5798272-5798311)
chr3 (361-411)||(13291681-13291731)
chr3 (468-510)||(42250833-42250875)
chr3 (471-508)||(17034556-17034593)
chr3 (87-179)||(31375342-31375434)
[»] scaffold0485 (1 HSPs)
scaffold0485 (358-410)||(8901-8953)
[»] scaffold0217 (1 HSPs)
scaffold0217 (350-507)||(6862-7024)
[»] chr6 (3 HSPs)
chr6 (468-508)||(19692026-19692066)
chr6 (106-189)||(24576083-24576166)
chr6 (362-412)||(21747115-21747165)


Alignment Details
Target: chr2 (Bit Score: 418; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 1 - 511
Target Start/End: Original strand, 13112033 - 13112546
Alignment:
Q  1 atgtttagtggaattagtgatgttgaaacgaaatagatttttgtaggatgtctctgaattttttatgaaaataaagtatcaagagaacaattagatatat 100  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| || ||||||||||||||||     
T  13112033 atgtttagtggaattagtgatgttgaaacgaaatagatttt-gtaggatgtctctgcattttttatgaaaataaagtattaaaagaacaattagatatac 13112131  T
Q  101 taatgtatattcaagtgtgcgagaccataaactaaaatttaaagtattaaatcaagttttagttctagaagaacatatacaagagcattcaaaatttgag 200  Q
    |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  13112132 taatgtatgttcaagtgtgggagaccataaactaaaatttaaagtattaaatcaagttttggttctagaagaacatatacaagagcattcaaaatttgag 13112231  T
Q  201 agaatctgaatttctagagcaagatctaaaagatacaagcatatgaagaagtcagactctgaaggtcaggagcatctgaagactgaagactctgaaggct 300  Q
    |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  13112232 agaagctgaatttctagaccaagatctaaaagatacaagcatatgaagaagtcagactttgaaggtctggagcatctgaagactgaagactctgaaggct 13112331  T
Q  301 atcagactccaaagaacacgttagatttgttgtcttatgaagaagtcactatcagattcagatagtacactttgtcttcttctaaccacgtgcatataca 400  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  13112332 atcagacttcaaagaacacgttagatttgtcgtcttatgaagaagtcactatcaaattcagatagtacactttgtcttcttctaaccacgtgcatataca 13112431  T
Q  401 aacaaagaactttaacgacacttgaaataaaacgggtaattccttttg----aaatgaactttgaatgacatttcaacgacattaaccaaatcaggaaac 496  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||  |||     
T  13112432 aacaaagaactttaacgacaattgaaataaaacgggtaattccttttgaagcaaatgaactttgaatgacatttcaacgacattaaccaaatcaaaaaat 13112531  T
Q  497 attccaacgtctctg 511  Q
    |||||||||||||||    
T  13112532 attccaacgtctctg 13112546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 84 - 187
Target Start/End: Complemental strand, 18038748 - 18038644
Alignment:
Q  84 agaacaattagatatattaatgtatattcaagtgtgcgagaccataaactaaaatttaaa-gtattaaatcaagttttagttctagaagaacatatacaa 182  Q
    ||||||||| |||||  |||||||| |||||||||||| ||||||  |||| || ||| | ||||||||||||||||| ||| | |||||||||||||||    
T  18038748 agaacaattggatatgctaatgtatgttcaagtgtgcgtgaccattgactagaaattatatgtattaaatcaagttttggttatggaagaacatatacaa 18038649  T
Q  183 gagca 187  Q
    |||||    
T  18038648 gagca 18038644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 317 - 412
Target Start/End: Complemental strand, 42256437 - 42256342
Alignment:
Q  317 cacgttagatttgttgtcttatgaagaagtcactatcagattcagatagtacactttgtcttcttctaaccacgtgcatatacaaacaaagaactt 412  Q
    ||||||||||||||  | || |||||  |||  ||||||| || ||||||||| ||||||||||| |||||||||||| |||||||||||||||||    
T  42256437 cacgttagatttgtctttttctgaagctgtctttatcagactctgatagtacattttgtcttcttgtaaccacgtgcagatacaaacaaagaactt 42256342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 106
Target Start/End: Complemental strand, 12061305 - 12061247
Alignment:
Q  48 atgtctctgaattttttatgaaaataaagtatcaagagaacaattagatatattaatgt 106  Q
    ||||||||||| |||| |||| |||||||||| || ||||||||||||||| |||||||    
T  12061305 atgtctctgaagttttgatgataataaagtatgaaaagaacaattagatatgttaatgt 12061247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 84 - 166
Target Start/End: Original strand, 27483842 - 27483924
Alignment:
Q  84 agaacaattagatatattaatgtatattcaagtgtgcgagaccataaactaaaatttaaagtattaaatcaagttttagttct 166  Q
    ||||||||| ||||||||||||| | |||||||||||  ||||||||| | |||||  || | | |||||||||||| |||||    
T  27483842 agaacaatttgatatattaatgtgtgttcaagtgtgcaggaccataaaattaaattctaattctaaaatcaagttttggttct 27483924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 351 - 508
Target Start/End: Complemental strand, 23866132 - 23865971
Alignment:
Q  351 atcagattcagatagtacactttgtcttcttctaaccacgtgcatatacaaacaaagaactttaacgacacttgaaataaaacgggtaattccttttg-- 448  Q
    |||||| |||||||||||| |||||| |||||| | || ||||||| ||||||||||||||| || |||| ||| ||| |||||  ||||||||||||      
T  23866132 atcagactcagatagtacagtttgtcctcttctgatcatgtgcataaacaaacaaagaacttcaaggacaattggaatgaaacgaataattccttttgaa 23866033  T
Q  449 --aaatgaactttgaatgacatttcaacgacattaaccaaatcaggaaacattccaacgtct 508  Q
      ||| ||| ||| |||||||||  ||||||||||| || |||| ||||||||||| |||||    
T  23866032 gcaaaggaattttaaatgacattcaaacgacattaatcatatcaagaaacattccaccgtct 23865971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 350 - 508
Target Start/End: Complemental strand, 12236344 - 12236182
Alignment:
Q  350 tatcagattcagatagtacactttgtcttcttctaaccacgtgcatatacaaacaaagaactttaacgacacttgaaataaaacgggtaattccttttga 449  Q
    ||||||| | ||||| |||| |||||| |||||| | || ||| | | ||| || |||||||| || |||| ||||||| |||||| |||||||||||||    
T  12236344 tatcagacttagataatacagtttgtcctcttctgatcatgtgaagaaacatacgaagaacttcaaggacaattgaaatgaaacggataattccttttga 12236245  T
Q  450 a----atgaactttgaatgacatttcaacgacattaaccaaatcaggaaacattccaacgtct 508  Q
    |    | ||| ||| |||| | ||||||||||||||||||| ||| ||||||||  |||||||    
T  12236244 agcaaaagaattttaaatgtcttttcaacgacattaaccaactcaagaaacatttgaacgtct 12236182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 123 - 186
Target Start/End: Complemental strand, 4415432 - 4415369
Alignment:
Q  123 gaccataaactaaaatttaaagtattaaatcaagttttagttctagaagaacatatacaagagc 186  Q
    ||||||| ||||||||| || |||||||||||||||||  ||||  ||||| ||||||||||||    
T  4415432 gaccatagactaaaattcaatgtattaaatcaagttttgattctgaaagaaaatatacaagagc 4415369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 506
Target Start/End: Complemental strand, 12191231 - 12191080
Alignment:
Q  358 tcagatagtacactttgtcttcttctaaccacgtgcatatacaaacaaagaactttaacgacacttgaaataaaacgggtaattccttttg----aaatg 453  Q
    |||||||||||||||||||||||| |||||| ||||| | ||| | ||||||||| || |||| |||  ||  ||| | ||||||||||||    ||| |    
T  12191231 tcagatagtacactttgtcttcttgtaaccatgtgcagaaacagaaaaagaacttcaaagacaattg-gattgaacagataattccttttgaagcaaagg 12191133  T
Q  454 aactttgaatgacatttcaacgacattaaccaaatcaggaaacattccaacgt 506  Q
    || ||  |||| | || |||| ||||||||||||||| |||| ||||||||||    
T  12191132 aatttcaaatgtcgttccaacaacattaaccaaatcaagaaatattccaacgt 12191080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 361 - 415
Target Start/End: Original strand, 17651271 - 17651325
Alignment:
Q  361 gatagtacactttgtcttcttctaaccacgtgcatatacaaacaaagaactttaa 415  Q
    ||||||||| |||||||||||||||||||||||| | |||| || |||| |||||    
T  17651271 gatagtacagtttgtcttcttctaaccacgtgcagaaacaagcagagaaatttaa 17651325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 84 - 142
Target Start/End: Complemental strand, 19053629 - 19053571
Alignment:
Q  84 agaacaattagatatattaatgtatattcaagtgtgcgagaccataaactaaaatttaa 142  Q
    |||||||||||||||  |||| ||| |||||||||||  ||||||||| ||||||||||    
T  19053629 agaacaattagatatgctaatatatgttcaagtgtgctggaccataaattaaaatttaa 19053571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 175
Target Start/End: Original strand, 13977063 - 13977128
Alignment:
Q  110 ttcaagtgtgcgagaccataaactaaaatttaaagtattaaatcaagttttagttctagaagaaca 175  Q
    ||||||| ||| |||||||| | | ||||| |||||||||||||||||||| |||||  |||||||    
T  13977063 ttcaagtatgcaagaccatataattaaattcaaagtattaaatcaagttttggttctgtaagaaca 13977128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 468 - 508
Target Start/End: Complemental strand, 12606507 - 12606467
Alignment:
Q  468 tttcaacgacattaaccaaatcaggaaacattccaacgtct 508  Q
    ||||||| ||||||| ||||||| |||||||||||||||||    
T  12606507 tttcaacaacattaatcaaatcaagaaacattccaacgtct 12606467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 468 - 500
Target Start/End: Complemental strand, 27940885 - 27940853
Alignment:
Q  468 tttcaacgacattaaccaaatcaggaaacattc 500  Q
    ||||||||||||||||||||||| |||||||||    
T  27940885 tttcaacgacattaaccaaatcaagaaacattc 27940853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 39 - 181
Target Start/End: Complemental strand, 35896550 - 35896408
Alignment:
Q  39 ttttgtaggatgtctctgaattttttatgaaaataaagtatcaagagaacaattagatatattaatgtatattcaagtgtgcgagaccataaactaaaat 138  Q
    |||||||  |||| |||||| |||| |||| || ||||||| || |||||||||  |||| ||||||||| ||||||||||   ||||| ||||||||||    
T  35896550 ttttgtataatgtatctgaagttttgatgataagaaagtattaaaagaacaattgaatatgttaatgtatgttcaagtgtgtaggaccacaaactaaaat 35896451  T
Q  139 ttaaagtattaaatcaagttttagttctagaagaacatataca 181  Q
    | || ||||||||| |||||||||| ||  |||||||||||||    
T  35896450 taaatgtattaaataaagttttagtactgaaagaacatataca 35896408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 339 - 508
Target Start/End: Complemental strand, 35896209 - 35896036
Alignment:
Q  339 gaagaagtcactatcagattcagatagtacactttgtcttcttctaaccacgtgcatatacaaacaaagaactttaacgacacttgaaataaaacgggta 438  Q
    ||||| |||| ||||||| |||||||||||| ||| || |||||||||||| |||| | ||||| |||||||||||| || | | | ||| ||| || ||    
T  35896209 gaagatgtcattatcagactcagatagtacagtttatcctcttctaaccacatgcagaaacaaataaagaactttaaggaaaatcggaatgaaatggata 35896110  T
Q  439 attccttttg----aaatgaactttgaatgacatttcaacgacattaaccaaatcaggaaacattccaacgtct 508  Q
    ||||||||||    ||||||| ||  |||  | |||||| ||||||||||||||||  ||||||||||||||||    
T  35896109 attccttttgaagcaaatgaatttcaaatttcttttcaaagacattaaccaaatcaaaaaacattccaacgtct 35896036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 84 - 215
Target Start/End: Complemental strand, 19227859 - 19227727
Alignment:
Q  84 agaacaattagatatattaatgtatattcaagtgtgcgagaccataaactaaaatttaaagtattaaatcaagttttagttctagaagaacatatacaag 183  Q
    |||||||||| |||||||||| ||| |||||||||||  ||||||||||||||||| || ||||||||||||  ||| ||  |  |||| ||||| ||||    
T  19227859 agaacaattaaatatattaatatatgttcaagtgtgcaggaccataaactaaaattcaatgtattaaatcaaaatttggtattgaaagatcatattcaag 19227760  T
Q  184 agcattcaaaatttg-agagaatctgaatttct 215  Q
    ||||||  ||||||| |||||| ||||| ||||    
T  19227759 agcatttgaaatttgaagagaagctgaagttct 19227727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 327 - 504
Target Start/End: Original strand, 19960225 - 19960404
Alignment:
Q  327 ttgttgtcttatgaagaagtcactatcagattcagatagtacactttgtcttcttctaaccacgtgcatatacaaacaaagaactttaacgacacttgaa 426  Q
    |||| ||||| |||||| ||||| |||||| |||||| ||||||||||||||||||| |||||||||| | ||| || |||||||| || |||| ||| |    
T  19960225 ttgtcgtcttctgaagatgtcaccatcagactcagatggtacactttgtcttcttctgaccacgtgcaaaaacatac-aagaacttcaaagacaattgga 19960323  T
Q  427 ataaaacgggtaattccttttg----aaatgaactttgaatgacatttcaacgacattaaccaaatcaggaaacattccaac 504  Q
    ||  |||   |||||| |||||    ||| ||| ||  |||| | ||||||||||||||||||||||| |||||||||||||    
T  19960324 at-gaacaaataattctttttgaagcaaaggaatttcaaatgtcttttcaacgacattaaccaaatcatgaaacattccaac 19960404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 345 - 508
Target Start/End: Original strand, 29076822 - 29076989
Alignment:
Q  345 gtcactatcagattcagatagtacactttgtcttcttctaaccacgtgcatatacaaacaaagaactttaacgacacttgaaataaaacgggtaattcct 444  Q
    |||| ||||||| || ||||||| | ||| ||||||||||| |||||||| | |||||||||  | || || ||||  |||||| |||||  ||||| |     
T  29076822 gtcattatcagactctgatagtataatttatcttcttctaaacacgtgcagaaacaaacaaaacaattcaaggacaaatgaaatgaaacgaataatttca 29076921  T
Q  445 tttgaa----atgaactttgaatgacatttcaacgacattaaccaaatcaggaaacattccaacgtct 508  Q
    ||||||    ||||| ||  ||||||||||||||  |||||||||||||| |||||||||||||||||    
T  29076922 tttgaagcaaatgaatttcaaatgacatttcaacatcattaaccaaatcaagaaacattccaacgtct 29076989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 488
Target Start/End: Complemental strand, 20619819 - 20619698
Alignment:
Q  371 tttgtcttcttctaaccacgtgcatatacaaacaaagaactttaacgacacttgaaataaaacgggtaattccttttg----aaatgaactttgaatgac 466  Q
    |||||| |||||| || ||||||| | ||||||||||||||| || |||| |||||||||||| | |||||   ||||    ||||||| ||  ||||||    
T  20619819 tttgtcctcttctgactacgtgcagaaacaaacaaagaacttcaaagacaattgaaataaaacagataatttaatttgaaaaaaatgaatttaaaatgac 20619720  T
Q  467 atttcaacgacattaaccaaat 488  Q
     |||||| ||||||||||||||    
T  20619719 ctttcaatgacattaaccaaat 20619698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 333 - 428
Target Start/End: Original strand, 1616312 - 1616407
Alignment:
Q  333 tcttatgaagaagtcactatcagattcagatagtacactttgtcttcttctaaccacgtgcatatacaaacaaagaactttaacgacacttgaaat 428  Q
    |||| |||||| |||||||||||| |||||||| ||| |||  | |||||| |||| ||||| | |||||||||||| || || |||| |||||||    
T  1616312 tcttctgaagaggtcactatcagactcagatagcacagtttaccctcttctgaccatgtgcacaaacaaacaaagaatttcaaggacaattgaaat 1616407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 420
Target Start/End: Original strand, 17316345 - 17316448
Alignment:
Q  317 cacgttagatttgttgtcttatgaagaagtcactatcagattcagatagtacactttgtcttcttctaaccacgtgcatatacaaacaaagaactttaac 416  Q
    ||||| ||||||||  ||||||| ||  ||| |||||| | || ||||||||| ||||||||||||| |||| ||| | | |||||||| |||||||||     
T  17316345 cacgtcagatttgtcttcttatgtagttgtctctatcaaagtctgatagtacaatttgtcttcttctgaccatgtgtagaaacaaacaaggaactttaag 17316444  T
Q  417 gaca 420  Q
    ||||    
T  17316445 gaca 17316448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 412
Target Start/End: Original strand, 12893277 - 12893318
Alignment:
Q  371 tttgtcttcttctaaccacgtgcatatacaaacaaagaactt 412  Q
    |||||||||||||||||||||| | | |||||||||||||||    
T  12893277 tttgtcttcttctaaccacgtgtagaaacaaacaaagaactt 12893318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0329 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 86 - 188
Target Start/End: Complemental strand, 4714 - 4612
Alignment:
Q  86 aacaattagatatattaatgtatattcaagtgtgcgagaccataaactaaaatttaaagtattaaatcaagttttagttctagaagaacatatacaagag 185  Q
    ||||||| |||||  |||| ||| |||||||||||  ||||||| ||||||||| | |||||||| ||||||||| ||||||||| ||  ||||||||||    
T  4714 aacaattggatatgctaatatattttcaagtgtgcaggaccatatactaaaattcatagtattaagtcaagttttcgttctagaaaaatgtatacaagag 4615  T
Q  186 cat 188  Q
    |||    
T  4614 cat 4612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0329; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 358 - 504
Target Start/End: Complemental strand, 4434 - 4286
Alignment:
Q  358 tcagatagtacactttgtcttcttctaaccacgtgcatatacaaacaaagaactttaacgacacttgaaataaaacgggtaattccttttg----aaatg 453  Q
    |||||||||| | ||||||||||||| | |||||||| |||||||||| |||||| || ||||  || ||| || ||| ||||||||| |     ||| |    
T  4434 tcagatagtatattttgtcttcttctgatcacgtgcagatacaaacaa-gaacttcaaggacaaatggaatgaa-cggataattccttgttcaacaaagg 4337  T
Q  454 aactttgaatgacatttcaacgacattaaccaaatcaggaaacattccaac 504  Q
    || ||  |||||| ||||||||||||||||||||||| |||||||||||||    
T  4336 aatttcaaatgacttttcaacgacattaaccaaatcaagaaacattccaac 4286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 304 - 500
Target Start/End: Original strand, 33925453 - 33925653
Alignment:
Q  304 agactccaaagaacacgttagatttgttgtcttatgaagaagtcactatcagattcagatagtacactttgtcttcttctaaccacgtgcatatacaaac 403  Q
    |||||| ||||||||||| | | || | ||||| |||||| |||||||||||| | |||  ||||| ||| | ||||||| ||||||||||   ||||||    
T  33925453 agactctaaagaacacgtcaaacttatcgtcttctgaagatgtcactatcagactgagacggtacatttttttttcttctgaccacgtgcaggaacaaac 33925552  T
Q  404 aaagaactttaacgacacttgaaataaaacgggtaattccttttga---aatgaacttt-gaatgacatttcaacgacattaaccaaatcaggaaacatt 499  Q
    ||||||||| || ||||  |||||| ||| || |||||| ||||||   || ||| |||  |||  | ||||||||||||||||||||||| ||||||||    
T  33925553 aaagaacttcaaagacaaatgaaatgaaatggataattcattttgaagcaaagaaatttcaaatatcttttcaacgacattaaccaaatcaagaaacatt 33925652  T
Q  500 c 500  Q
    |    
T  33925653 c 33925653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 319 - 412
Target Start/End: Original strand, 23584864 - 23584957
Alignment:
Q  319 cgttagatttgttgtcttatgaagaagtcactatcagattcagatagtacactttgtcttcttctaaccacgtgcatatacaaacaaagaactt 412  Q
    ||||||||||||  |||| || ||  ||| |||||| | || |||||||||||||||||| |||| |||||||| ||| |||||||||||||||    
T  23584864 cgttagatttgtcttcttttgtagctgtctctatcaaagtctgatagtacactttgtcttattctgaccacgtgtataaacaaacaaagaactt 23584957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 187
Target Start/End: Original strand, 19712014 - 19712117
Alignment:
Q  84 agaacaattagatatattaatgtatattcaagtgtgcgagaccataaactaaaatttaaagtattaaatcaagttttagttctagaagaacatatacaag 183  Q
    ||||||||||||||| ||||| ||| ||||||| ||| |||||||| ||||||| | || |||| || ||||||| |  | || ||||||| |||||||     
T  19712014 agaacaattagatatgttaatatatgttcaagtatgcaagaccatacactaaaactcaatgtataaattcaagttctgatacttgaagaacgtatacaat 19712113  T
Q  184 agca 187  Q
    ||||    
T  19712114 agca 19712117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 349 - 412
Target Start/End: Complemental strand, 26576735 - 26576672
Alignment:
Q  349 ctatcagattcagatagtacactttgtcttcttctaaccacgtgcatatacaaacaaagaactt 412  Q
    |||||||| ||  |||||||| ||| ||||||||||| | |||||| |||||||||||||||||    
T  26576735 ctatcagactccaatagtacaatttttcttcttctaatctcgtgcagatacaaacaaagaactt 26576672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 362 - 412
Target Start/End: Original strand, 34062327 - 34062377
Alignment:
Q  362 atagtacactttgtcttcttctaaccacgtgcatatacaaacaaagaactt 412  Q
    |||||||| ||||||||||| | |||||||||| | |||||||||||||||    
T  34062327 atagtacaatttgtcttcttgtgaccacgtgcagaaacaaacaaagaactt 34062377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 361 - 409
Target Start/End: Original strand, 25724657 - 25724705
Alignment:
Q  361 gatagtacactttgtcttcttctaaccacgtgcatatacaaacaaagaa 409  Q
    |||||||||  |||||||||| |||||||||| | ||||||||||||||    
T  25724657 gatagtacaaattgtcttcttataaccacgtgtagatacaaacaaagaa 25724705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 84 - 187
Target Start/End: Complemental strand, 28981600 - 28981498
Alignment:
Q  84 agaacaattagatatattaatgtatattcaagtg-tgcgagaccataaactaaaatttaaagtattaaatcaagttttagttctagaagaacatatacaa 182  Q
    ||||||||| |||||  |||||||| |||||||| || || |||| |||||||||||||| |||| |||||||||||| ||| | |||||||||||||||    
T  28981600 agaacaattggatatgctaatgtatgttcaagtgctgaga-acca-aaactaaaatttaatgtatcaaatcaagttttggttatggaagaacatatacaa 28981503  T
Q  183 gagca 187  Q
    |||||    
T  28981502 gagca 28981498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 327 - 450
Target Start/End: Complemental strand, 28981335 - 28981216
Alignment:
Q  327 ttgttgtcttatgaagaagtcactatcagattcagatagtacactttgtcttcttctaaccacgtgcatatacaaacaaagaactttaacgacacttgaa 426  Q
    |||| ||||| |||||| |||||||||||| | || |||||||||||||||||||   ||||| |||| | ||||||||||||||| || |||| ||| |    
T  28981335 ttgtcgtcttctgaagatgtcactatcagacttaggtagtacactttgtcttctt---accacttgcagaaacaaacaaagaacttcaaagacaattgta 28981239  T
Q  427 ataaaacgggtaattccttttgaa 450  Q
    ||  ||||| ||||| ||||||||    
T  28981238 at-gaacggataatttcttttgaa 28981216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 409
Target Start/End: Complemental strand, 1767656 - 1767589
Alignment:
Q  343 aagtcactatcagattc-agatagtacactttgtcttcttctaaccacgtgcatatacaaacaaagaa 409  Q
    |||||||||||||| || ||||| |||| ||||||  ||||| ||||| |||||||||||||||||||    
T  1767656 aagtcactatcagactctagataatacagtttgtcaacttctgaccacatgcatatacaaacaaagaa 1767589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 457 - 511
Target Start/End: Complemental strand, 1767537 - 1767483
Alignment:
Q  457 tttgaatgacatttcaacgacattaaccaaatcaggaaacattccaacgtctctg 511  Q
    ||||||||||  |||||||||||| ||||||||| | || |||||||||||||||    
T  1767537 tttgaatgactattcaacgacattgaccaaatcaagcaatattccaacgtctctg 1767483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 350 - 406
Target Start/End: Original strand, 7560993 - 7561049
Alignment:
Q  350 tatcagattcagatagtacactttgtcttcttctaaccacgtgcatatacaaacaaa 406  Q
    ||||||| |||||||||||| ||||||||||||| | |  ||||| |||||||||||    
T  7560993 tatcagactcagatagtacaatttgtcttcttcttatcgtgtgcagatacaaacaaa 7561049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 358 - 394
Target Start/End: Complemental strand, 20095153 - 20095117
Alignment:
Q  358 tcagatagtacactttgtcttcttctaaccacgtgca 394  Q
    |||||||||||||||||||||||||| |||| |||||    
T  20095153 tcagatagtacactttgtcttcttctgaccatgtgca 20095117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 20095396 - 20095352
Alignment:
Q  143 agtattaaatcaagttttagttctagaagaacatatacaagagca 187  Q
    ||||| |||||||||||| ||||| ||||||| ||||||||||||    
T  20095396 agtataaaatcaagttttggttctggaagaacgtatacaagagca 20095352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 343 - 508
Target Start/End: Complemental strand, 37390380 - 37390211
Alignment:
Q  343 aagtcactatcagattcagatagtacactttgtcttcttctaaccacgtgcatatacaaacaaagaactttaacgacacttgaaataaaacgggtaattc 442  Q
    |||||||||||||| |  ||||||||| ||| ||||||||| ||||| |||| | ||||||||||||||| || || | ||| ||| |||| | ||||||    
T  37390380 aagtcactatcagactttgatagtacattttatcttcttctgaccacatgcagaaacaaacaaagaacttcaaggataattggaatgaaacagataattc 37390281  T
Q  443 ctttt----gaaatgaactttgaatgacatttcaacgacattaaccaaatcaggaaacattccaacgtct 508  Q
    |||||     ||| ||| ||  |||| | ||||||||| ||||||| ||||  |||||||||||||||||    
T  37390280 cttttcaagcaaaggaatttcaaatgtcttttcaacgatattaaccgaatcgagaaacattccaacgtct 37390211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 333 - 433
Target Start/End: Original strand, 36740351 - 36740452
Alignment:
Q  333 tcttatgaagaagtcactatcagattcagatagtac-actttgtcttcttctaaccacgtgcatatacaaacaaagaactttaacgacacttgaaataaa 431  Q
    |||||||||||||| ||||||||||||||||||||| | |||||| ||||||| |||  || | | ||||| |||||||||||| |||| ||| ||| ||    
T  36740351 tcttatgaagaagttactatcagattcagatagtacaattttgtcctcttctagccatatgtagaaacaaataaagaactttaaggacaattggaatgaa 36740450  T
Q  432 ac 433  Q
    ||    
T  36740451 ac 36740452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 101 - 197
Target Start/End: Complemental strand, 16791624 - 16791528
Alignment:
Q  101 taatgtatattcaagtgtgcgagaccataaactaaaatttaaagtattaaatcaagttttagttctagaagaacatatacaagagcattcaaaattt 197  Q
    |||| ||| |||||||||||  ||| | | ||||||||| || ||||||||||||||||  || ||| || |||||||||||||||||  |||||||    
T  16791624 taatctatgttcaagtgtgcacgactacagactaaaattcaatgtattaaatcaagtttcggtactaaaataacatatacaagagcatctaaaattt 16791528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 468 - 502
Target Start/End: Complemental strand, 16791223 - 16791189
Alignment:
Q  468 tttcaacgacattaaccaaatcaggaaacattcca 502  Q
    ||||||||||||||||||||||| |||||||||||    
T  16791223 tttcaacgacattaaccaaatcaagaaacattcca 16791189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 123 - 189
Target Start/End: Complemental strand, 37390622 - 37390556
Alignment:
Q  123 gaccataaactaaaatttaaagtattaaatcaagttttagttctagaagaacatatacaagagcatt 189  Q
    ||||||| ||||||||| || || |||||||||||||| || ||  |||||||||||||||| ||||    
T  37390622 gaccatagactaaaattcaatgtgttaaatcaagttttggtactgaaagaacatatacaagaacatt 37390556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 84 - 188
Target Start/End: Original strand, 5797951 - 5798055
Alignment:
Q  84 agaacaattagatatattaatgtatattcaagtgtgcgagaccataaactaaaatttaaagtattaaatcaagttttagttctagaagaacatatacaag 183  Q
    ||||||||| ||||| ||||||||| |||||||||||   | ||||||||||||||| | |||| |||||||||||  |||||  || | ||||||||||    
T  5797951 agaacaattggatatgttaatgtatgttcaagtgtgcagaatcataaactaaaatttcatgtatcaaatcaagtttcggttctgaaatatcatatacaag 5798050  T
Q  184 agcat 188  Q
    |||||    
T  5798051 agcat 5798055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 362 - 511
Target Start/End: Complemental strand, 31779742 - 31779589
Alignment:
Q  362 atagtacactttgtcttcttctaaccacgtgcatatacaaacaaagaactttaacgacacttgaaataaaacgggtaattccttt---tg-aaatgaact 457  Q
    ||||||||  || ||||||||  | |||||||| | ||||||||||||||| || ||||  | ||||||||||| ||||||||||   || ||| ||| |    
T  31779742 atagtacaacttatcttcttccgatcacgtgcagaaacaaacaaagaacttcaaagacaaataaaataaaacggataattcctttaaatgcaaaggaatt 31779643  T
Q  458 ttgaatgacatttcaacgacattaaccaaatcaggaaacattccaacgtctctg 511  Q
    |  || ||| |||||||||||||||||||||||  ||||||| |||||||||||    
T  31779642 tcaaacgacctttcaacgacattaaccaaatcataaaacatttcaacgtctctg 31779589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 361 - 412
Target Start/End: Original strand, 14427215 - 14427266
Alignment:
Q  361 gatagtacactttgtcttcttctaaccacgtgcatatacaaacaaagaactt 412  Q
    ||||||||| |||||||| ||||||||||||| ||| |||||||||||||||    
T  14427215 gatagtacaatttgtctttttctaaccacgtgtataaacaaacaaagaactt 14427266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 142
Target Start/End: Complemental strand, 9796649 - 9796527
Alignment:
Q  18 tgatgttgaaacgaaatagatttttgtaggatgtctctgaattttttatgaaaataaagtatcaagagaacaattagatatattaatgtatattcaagtg 117  Q
    |||||||| ||| |||| |||||| |||  || |||||||| |||| |||| |||||||||| || ||||||||| ||||| ||||| ||| ||||||||    
T  9796649 tgatgttggaacaaaattgatttt-gtacaatttctctgaagttttgatgataataaagtattaa-agaacaattggatatgttaatatatgttcaagtg 9796552  T
Q  118 tgcgagaccataaactaaaatttaa 142  Q
    |||  || |||| | ||||||||||    
T  9796551 tgcaggatcatagattaaaatttaa 9796527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 508
Target Start/End: Original strand, 5798272 - 5798311
Alignment:
Q  469 ttcaacgacattaaccaaatcaggaaacattccaacgtct 508  Q
    |||||||||||||||||||||| |||||||||||| ||||    
T  5798272 ttcaacgacattaaccaaatcaagaaacattccaatgtct 5798311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 361 - 411
Target Start/End: Original strand, 13291681 - 13291731
Alignment:
Q  361 gatagtacactttgtcttcttctaaccacgtgcatatacaaacaaagaact 411  Q
    ||||||||| ||||||||||||| |||||||| | | ||||||||||||||    
T  13291681 gatagtacaatttgtcttcttctgaccacgtgtagaaacaaacaaagaact 13291731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 468 - 510
Target Start/End: Original strand, 42250833 - 42250875
Alignment:
Q  468 tttcaacgacattaaccaaatcaggaaacattccaacgtctct 510  Q
    |||||||||||||||||||||||  | ||||||||||||||||    
T  42250833 tttcaacgacattaaccaaatcaaaagacattccaacgtctct 42250875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 471 - 508
Target Start/End: Original strand, 17034556 - 17034593
Alignment:
Q  471 caacgacattaaccaaatcaggaaacattccaacgtct 508  Q
    ||||||||||||||| |||||| |||||||||||||||    
T  17034556 caacgacattaaccatatcaggcaacattccaacgtct 17034593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 87 - 179
Target Start/End: Original strand, 31375342 - 31375434
Alignment:
Q  87 acaattagatatattaatgtatattcaagtgtgcgagaccataaactaaaatttaaagtattaaatcaagttttagttctagaagaacatata 179  Q
    |||||| |||||  ||||| || |||||||||||  | ||||| ||||| ||| || ||||||||||||||||| || ||  |||||||||||    
T  31375342 acaatttgatatgctaatgcatgttcaagtgtgcagggccatagactaagattcaatgtattaaatcaagttttggtactgaaagaacatata 31375434  T

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Target: scaffold0485 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0485
Description:

Target: scaffold0485; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 358 - 410
Target Start/End: Original strand, 8901 - 8953
Alignment:
Q  358 tcagatagtacactttgtcttcttctaaccacgtgcatatacaaacaaagaac 410  Q
    |||||||||||||||||||||||||| |  |||||||||||||||||| ||||    
T  8901 tcagatagtacactttgtcttcttctgattacgtgcatatacaaacaaggaac 8953  T

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Target: scaffold0217 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 350 - 507
Target Start/End: Original strand, 6862 - 7024
Alignment:
Q  350 tatcagattcagatagtacactttgt-cttcttctaaccacgtgcatatacaaacaaagaactttaacgacacttgaaataaaacgggtaattccttttg 448  Q
    ||||||| |||||||| ||| ||| | |||||||| |||||   |||| ||||||||||||| |||| |||| ||| ||| |||| | ||||||||||||    
T  6862 tatcagactcagataggacatttttttcttcttcttaccacacacataaacaaacaaagaacattaaggacaattggaatgaaacagataattccttttg 6961  T
Q  449 aa---atgaactttgaatga-catttcaacgacattaaccaaatcaggaaacattccaacgtc 507  Q
    ||   | ||| ||| ||  | | ||||||||||||||||||||||| |||||||| |||||||    
T  6962 aagcaaagaaatttcaaatatcttttcaacgacattaaccaaatcaagaaacatttcaacgtc 7024  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 468 - 508
Target Start/End: Original strand, 19692026 - 19692066
Alignment:
Q  468 tttcaacgacattaaccaaatcaggaaacattccaacgtct 508  Q
    ||||||||||||||||||||||| |||||||||||| ||||    
T  19692026 tttcaacgacattaaccaaatcaagaaacattccaatgtct 19692066  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 106 - 189
Target Start/End: Complemental strand, 24576166 - 24576083
Alignment:
Q  106 tatattcaagtgtgcgagaccataaactaaaatttaaagtattaaatcaagttttagttctagaagaacatatacaagagcatt 189  Q
    ||||||||| |||||  ||||||| ||||||||| | ||||| ||||||||||||  | || |||||| |||||||| ||||||    
T  24576166 tatattcaaatgtgcatgaccatagactaaaattcatagtataaaatcaagttttgatcctggaagaatatatacaaaagcatt 24576083  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 362 - 412
Target Start/End: Complemental strand, 21747165 - 21747115
Alignment:
Q  362 atagtacactttgtcttcttctaaccacgtgcatatacaaacaaagaactt 412  Q
    ||||| || ||| ||||||||| |||||||||| |||||||||||||||||    
T  21747165 atagttcaatttatcttcttctgaccacgtgcagatacaaacaaagaactt 21747115  T

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