View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3470_low_14 (Length: 506)
Name: NF3470_low_14
Description: NF3470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3470_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 132 - 483
Target Start/End: Complemental strand, 53147787 - 53147436
Alignment:
| Q |
132 |
tgatataaaacgaagcttccgtgacttttttgtgtaatgataaaatattttagggattgatatgatacggaaataaataaaaatcagtgatacgtcaaca |
231 |
Q |
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| T |
53147787 |
tgatataaaacgaagcttccgtgacttttttgtgtaatgataaaatattttagggattgatatgatacggaaataaataaaa-tcagtgatacgtcaaca |
53147689 |
T |
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| Q |
232 |
ttcctgactttctggatccctcatactttttgctatctgtagatcttgggaaacatgatgatgattgaaaggcatgtaggggggaccaccttatctttta |
331 |
Q |
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| T |
53147688 |
ttcctgactttctggatccctcatactttttgctatctgtagatcttgggaaacatgatgatgattgaaaggcatgtaggggggaccaccttatctttta |
53147589 |
T |
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| Q |
332 |
tagtagtgcataattaaataaaattatttataaaataggattattttctaaacaatgcttttaaataaaacataccgacatatata-nnnnnnnataatt |
430 |
Q |
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| T |
53147588 |
tagtagtgcataattaaataaaattatttataaaataggattattttctaaacaatgcttttaaataaaacataccgacatatatatattttttataatt |
53147489 |
T |
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| Q |
431 |
gcttgtagtcacagaaatgggatcctatgattacaaccaccggcagttccacc |
483 |
Q |
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| T |
53147488 |
gcttgtagtcacagaaatgggatcctatgattacaaccaccggcagttccacc |
53147436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 18 - 121
Target Start/End: Complemental strand, 53147924 - 53147821
Alignment:
| Q |
18 |
agtaagttgaagaatgtgcactctgaaaattctagaggatccaattcaatttttggaagatctatgatttcgatgcccacacttaacttaaaatgcatta |
117 |
Q |
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| T |
53147924 |
agtaagttgaagaatgtgcactctgaaaattctagaggatccaattcaatttttggaagatctatgatatcgatgcccacacttaacttaaaatgcatta |
53147825 |
T |
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| Q |
118 |
aaat |
121 |
Q |
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| T |
53147824 |
aaat |
53147821 |
T |
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