View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3470_low_16 (Length: 485)
Name: NF3470_low_16
Description: NF3470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3470_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 19137471 - 19137867
Alignment:
| Q |
1 |
tgaaggtgttccatttcttgagcactgatttaagctttgttagttttgcaacttttgccatgttggaaagatgaagaaacaaagaggatataggtgtatg |
100 |
Q |
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| T |
19137471 |
tgaaggtgttccatttcttgagcactgatttaagctttgctagttttgcaacttttgccatgttggaaagttgaagaaacaaagaggatataggtgtatg |
19137570 |
T |
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| Q |
101 |
tgagaaagtgtaaggaaggttcggttttggtttgtataaaaaggtagggagaagggtgaaatggtaataagcacctaattaagaaaaagatagtggccta |
200 |
Q |
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| T |
19137571 |
tgagaaagtgtagggaaggttcggttttggtttgtataaaaaggtagggagaagggtgaaatggtaataagcacctaattaagaaaaagatagtggccta |
19137670 |
T |
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| Q |
201 |
aacgatagttgtgtttttgtggcatttggactttagtgggtatgaattttgaaccgttgtttggtttgtctttgtcaacctttatatatttttctctcta |
300 |
Q |
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| T |
19137671 |
aacgatagttgtgtttttgtggcctttggactttagtgggtgtgaattttgaaccgttgtttggtttgtctttgtcaacctttatatatttttctctcta |
19137770 |
T |
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| Q |
301 |
ttattattaggtgtctctagagctctttaggaagttcttttctataattaatgaataaatagtannnnnnnnnggtaactaatgtttaggtgatttgg |
398 |
Q |
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| T |
19137771 |
ttattattaggtgtctctcgagctctttaggaagttcttttctataattaatgaataaatagta-ttttttttggtaactaatgtttaggtgatttgg |
19137867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 400 - 441
Target Start/End: Original strand, 19137889 - 19137930
Alignment:
| Q |
400 |
atctcaaatgttcataatttaaaggacataaggtgaactaag |
441 |
Q |
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| T |
19137889 |
atctcaaatgttcataatttaaaggacataaggtgaactaag |
19137930 |
T |
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