View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3470_low_21 (Length: 445)
Name: NF3470_low_21
Description: NF3470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3470_low_21 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 346; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 13 - 419
Target Start/End: Complemental strand, 4845436 - 4845031
Alignment:
| Q |
13 |
acttttcttgtcaatactactgaagctatatagaaaaggttcaagatctgtcaaatcctgaattccttgctgattgatggaactgcaactcaagaccttc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
4845436 |
acttttcttgtcaatactactgaagctatatagaaaaggttcaagatctgtcaaatcctgaattccttgctgat----ggaactgcaactaaagaccttc |
4845341 |
T |
|
| Q |
113 |
tcaatccagactgagttctcactggagtcagggaaacttgttgataaagtgcgtttgattatattcgattcacaaactataaggatcaaatacaaaggga |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4845340 |
tcaatccagactgagttctcactggagtcagggaaactcagtgataaagtgcgtttgattatattcgattcacaaactataaggatcaaatacaaaggga |
4845241 |
T |
|
| Q |
213 |
tttgtggatgaatcaattagccaagtatgttttt--gcaaattgagttttgacacctcactgttctattcgaaatataaaaggttccggccatcggacat |
310 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
4845240 |
tttgtggatgaatcaattagccaagtatttttttttgcaaattgagttttgacacctcactgttctatttgaaatataaaaggttccggccatcggacat |
4845141 |
T |
|
| Q |
311 |
ttaagttgcggttgagatgatgcacttttcttgggggcaggtaaggcagttgttgcttttgaagttgcggcttgcggca-agccatggctggtggaggct |
409 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
4845140 |
ttaagttgcggttgatatgatgcacttttcttgggggcaggtaaggcagttgttgcttttgaagttgcggcttgcggcatagccatggctggtggaggct |
4845041 |
T |
|
| Q |
410 |
gcaaagcttc |
419 |
Q |
| |
|
|||||||||| |
|
|
| T |
4845040 |
gcaaagcttc |
4845031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 287 - 374
Target Start/End: Complemental strand, 4865632 - 4865545
Alignment:
| Q |
287 |
taaaaggttccggccatcggacatttaagttgcggttgagatgatgcacttttcttgggggcaggtaaggcagttgttgcttttgaag |
374 |
Q |
| |
|
||||||||||| |||||||||||||| || | || ||||||||||||||| | ||||||| ||||||||||| ||||||||| |||| |
|
|
| T |
4865632 |
taaaaggttcctgccatcggacatttcagcggtgggtgagatgatgcacttgttttggggggaggtaaggcaggtgttgctttcgaag |
4865545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 193 - 251
Target Start/End: Complemental strand, 4818893 - 4818834
Alignment:
| Q |
193 |
aaggatcaaatacaaagggatttgtggatgaatcaa-ttagccaagtatgtttttgcaaa |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || |||||||||||| |||| ||||| |
|
|
| T |
4818893 |
aaggatcaaatacaaagggatttgtggatgaataaatttagccaagtattttttcgcaaa |
4818834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 294 - 374
Target Start/End: Complemental strand, 4814722 - 4814643
Alignment:
| Q |
294 |
ttccggccatcggacatttaagttgcggttgagatgatgcacttttcttgggggcaggtaaggcagttgttgcttttgaag |
374 |
Q |
| |
|
|||| |||||| ||||||| ||| ||||||||||||||| |||||||| ||||||||||||| || ||||||||| |||| |
|
|
| T |
4814722 |
ttccagccatctgacatttcagtgacggttgagatgatgcccttttctt-ggggcaggtaaggtaggtgttgctttagaag |
4814643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University