View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3470_low_22 (Length: 439)

Name: NF3470_low_22
Description: NF3470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3470_low_22
NF3470_low_22
[»] chr5 (21 HSPs)
chr5 (17-352)||(28677763-28678098)
chr5 (143-352)||(5506557-5506766)
chr5 (192-352)||(30489775-30489935)
chr5 (225-352)||(28703963-28704090)
chr5 (140-387)||(34016002-34016239)
chr5 (338-425)||(28678116-28678203)
chr5 (338-437)||(28704108-28704207)
chr5 (146-264)||(6705989-6706107)
chr5 (140-352)||(759160-759362)
chr5 (76-134)||(28668900-28668958)
chr5 (338-387)||(30489953-30490002)
chr5 (338-387)||(38740475-38740524)
chr5 (137-218)||(33144184-33144265)
chr5 (340-384)||(759382-759426)
chr5 (140-203)||(17636344-17636407)
chr5 (140-222)||(34017615-34017697)
chr5 (286-352)||(38740542-38740608)
chr5 (139-213)||(1145140-1145214)
chr5 (141-187)||(4845302-4845348)
chr5 (354-387)||(5506495-5506528)
chr5 (140-204)||(17644614-17644678)
[»] chr8 (8 HSPs)
chr8 (140-387)||(34279392-34279639)
chr8 (137-352)||(5967103-5967318)
chr8 (338-387)||(5967036-5967085)
chr8 (140-239)||(31762241-31762340)
chr8 (140-218)||(33220787-33220865)
chr8 (140-213)||(43640978-43641051)
chr8 (140-221)||(4640792-4640873)
chr8 (140-185)||(9418587-9418632)
[»] chr3 (25 HSPs)
chr3 (139-352)||(15040680-15040893)
chr3 (146-352)||(34082845-34083051)
chr3 (140-349)||(19872010-19872219)
chr3 (135-264)||(53814515-53814644)
chr3 (146-272)||(7665739-7665865)
chr3 (140-348)||(39645774-39645970)
chr3 (338-437)||(39645992-39646090)
chr3 (339-387)||(7665912-7665960)
chr3 (336-387)||(15040909-15040960)
chr3 (338-387)||(19871940-19871989)
chr3 (341-387)||(35069096-35069142)
chr3 (140-218)||(53827661-53827739)
chr3 (338-387)||(34084312-34084361)
chr3 (140-221)||(53824291-53824371)
chr3 (140-204)||(35069460-35069524)
chr3 (140-218)||(6162682-6162760)
chr3 (136-190)||(44430414-44430468)
chr3 (140-221)||(35485243-35485324)
chr3 (312-352)||(7665853-7665893)
chr3 (137-222)||(4969872-4969957)
chr3 (138-212)||(40516972-40517046)
chr3 (141-190)||(13843621-13843670)
chr3 (139-187)||(16931445-16931493)
chr3 (178-222)||(39649878-39649922)
chr3 (137-213)||(50663872-50663948)
[»] chr7 (13 HSPs)
chr7 (137-352)||(5038-5253)
chr7 (144-352)||(38386178-38386386)
chr7 (143-352)||(38047649-38047858)
chr7 (140-352)||(19365262-19365473)
chr7 (226-352)||(8377976-8378102)
chr7 (338-387)||(4971-5020)
chr7 (140-244)||(5061702-5061806)
chr7 (341-387)||(38386407-38386453)
chr7 (140-221)||(1537243-1537324)
chr7 (140-188)||(33839472-33839520)
chr7 (349-387)||(38047884-38047922)
chr7 (137-174)||(38790881-38790918)
chr7 (139-175)||(44552025-44552061)
[»] chr4 (20 HSPs)
chr4 (138-352)||(24974012-24974226)
chr4 (140-351)||(55527780-55527991)
chr4 (143-346)||(36501737-36501940)
chr4 (140-351)||(12586666-12586875)
chr4 (140-332)||(45237411-45237602)
chr4 (338-437)||(45244842-45244941)
chr4 (338-387)||(24973945-24973994)
chr4 (140-264)||(51719728-51719852)
chr4 (338-387)||(23283584-23283633)
chr4 (338-387)||(55527712-55527761)
chr4 (140-222)||(23283214-23283296)
chr4 (141-202)||(27992116-27992177)
chr4 (140-217)||(34235705-34235782)
chr4 (140-223)||(45246976-45247059)
chr4 (140-218)||(33164505-33164583)
chr4 (311-352)||(23283651-23283692)
chr4 (140-213)||(54208180-54208253)
chr4 (140-220)||(46817430-46817510)
chr4 (146-186)||(55312075-55312115)
chr4 (140-185)||(628088-628133)
[»] chr1 (20 HSPs)
chr1 (138-352)||(33617642-33617856)
chr1 (226-352)||(33617914-33618040)
chr1 (138-351)||(33401406-33401608)
chr1 (138-352)||(48026962-48027176)
chr1 (167-341)||(35563532-35563698)
chr1 (139-437)||(28474791-28475073)
chr1 (140-323)||(35563364-35563535)
chr1 (140-221)||(28446527-28446608)
chr1 (139-221)||(28475979-28476061)
chr1 (140-221)||(39650196-39650277)
chr1 (140-217)||(50065478-50065555)
chr1 (338-385)||(35563712-35563759)
chr1 (338-387)||(33401627-33401675)
chr1 (338-379)||(33617874-33617915)
chr1 (338-382)||(33618058-33618102)
chr1 (139-217)||(45688307-45688385)
chr1 (140-201)||(5602944-5603005)
chr1 (138-218)||(49033731-49033810)
chr1 (140-215)||(50069237-50069312)
chr1 (140-185)||(11821160-11821205)
[»] chr6 (15 HSPs)
chr6 (140-352)||(32274184-32274396)
chr6 (157-352)||(4319101-4319296)
chr6 (139-352)||(12703814-12704030)
chr6 (339-425)||(12704049-12704135)
chr6 (139-244)||(17436515-17436620)
chr6 (338-437)||(4319314-4319413)
chr6 (140-218)||(31522535-31522613)
chr6 (140-222)||(32275767-32275849)
chr6 (338-387)||(31483867-31483916)
chr6 (170-352)||(31483673-31483849)
chr6 (135-221)||(14153349-14153435)
chr6 (362-437)||(32274714-32274789)
chr6 (141-218)||(4321738-4321815)
chr6 (140-187)||(807200-807247)
chr6 (140-218)||(35060895-35060973)
[»] chr2 (9 HSPs)
chr2 (140-244)||(8273245-8273349)
chr2 (338-387)||(8273465-8273514)
chr2 (288-352)||(8273382-8273447)
chr2 (140-217)||(2154262-2154339)
chr2 (141-218)||(12969264-12969340)
chr2 (143-221)||(11712961-11713039)
chr2 (167-212)||(8277394-8277439)
chr2 (140-221)||(22727662-22727743)
chr2 (140-204)||(22787999-22788063)


Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-156; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 17 - 352
Target Start/End: Original strand, 28677763 - 28678098
Alignment:
Q  17 catggagcacataacggcattgcaggagaagaatatggtagtgccttagtacaaactctaggccttgataactatgatttggaattggcatccaaaattg 116  Q
    |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  28677763 catggagcacataacggcattgtaggagaggaatatggtagtgccttagtacaaactctaggccttgataactacgatttggaattggcatccaaaattg 28677862  T
Q  117 taccaaattacatgaatgtcttagaattctgctcattatccaaatggaatcgctcattccgaaagtaaatgatcgaaatgcccctacgaaagttaacatg 216  Q
    ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||| |||||||||||    
T  28677863 taccaaattacatgaatgtttcagaattctgctcattatccaaatggaatcgctcattcctaaagtaaatgaccgaaatacccctacgtaagttaacatg 28677962  T
Q  217 cgctacagaaaattataacgtaacttaaaataaatagcgtgacttaacacgcgctactgttatttgtgagttatttgttgaatacttagcgcaggttaac 316  Q
    |||||| |||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  28677963 cgctactgaaaattataacgtaacttaaaataagtagcgtgacttaacatgcgatactgttatttgtgagttatttgttgaatgcttagcgcaggttaac 28678062  T
Q  317 atgcgctagtgtattgtgcaacgtgagttaactcac 352  Q
    ||||||||||||||||||||||||||||||||||||    
T  28678063 atgcgctagtgtattgtgcaacgtgagttaactcac 28678098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 143 - 352
Target Start/End: Complemental strand, 5506766 - 5506557
Alignment:
Q  143 ttctgctcattatccaaatggaatcgctcattccgaaagtaaatgatcgaaatgcccctacgaaagttaacatgcgctacagaaaattataacgtaactt 242  Q
    ||||||||||||| ||| |||| || |||||||| |||||||||||||||||||| |||||| | ||| |||||||| |  | |||||||||| ||||||    
T  5506766 ttctgctcattattcaactggattcactcattcccaaagtaaatgatcgaaatgctcctacgcatgttgacatgcgccagtgcaaattataacataactt 5506667  T
Q  243 aaaataaatagcgtgacttaacacgcgctactgttatttgtgagttatttgttgaatacttagcgcaggttaacatgcgctagtgtattgtgcaacgtga 342  Q
    || |||| ||||||||||||||| |||||| ||| |||||||||||||||||||||| ||||| ||| ||||||||||||||||||| |||| |||||||    
T  5506666 aagataagtagcgtgacttaacatgcgctagtgtcatttgtgagttatttgttgaatgcttagtgcaagttaacatgcgctagtgtactgtgaaacgtga 5506567  T
Q  343 gttaactcac 352  Q
    ||||||||||    
T  5506566 gttaactcac 5506557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 192 - 352
Target Start/End: Original strand, 30489775 - 30489935
Alignment:
Q  192 aaatgcccctacgaaagttaacatgcgctacagaaaattataacgtaacttaaaataaatagcgtgacttaacacgcgctactgttatttgtgagttatt 291  Q
    ||||||||||||| | |||||||||| |||  | | |||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||    
T  30489775 aaatgcccctacgcatgttaacatgctctagtgcagattataacgtaacttaaaataagtagcgtgacttaacatgcgctagtgttatttgtgagttatt 30489874  T
Q  292 tgttgaatacttagcgcaggttaacatgcgctagtgtattgtgcaacgtgagttaactcac 352  Q
    |||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  30489875 tgttgaatgcttagcgcaagttaacatgcgctagtgtattgtgaaacgtgagttaactcac 30489935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 225 - 352
Target Start/End: Original strand, 28703963 - 28704090
Alignment:
Q  225 aaaattataacgtaacttaaaataaatagcgtgacttaacacgcgctactgttatttgtgagttatttgttgaatacttagcgcaggttaacatgcgcta 324  Q
    ||||||||||||||| |||| |||| |||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  28703963 aaaattataacgtaaattaagataagtagcatgacttaacacgcgctagtgttatttgtgagttatttgttgaatgcttagcgcaggttaacatgcgcta 28704062  T
Q  325 gtgtattgtgcaacgtgagttaactcac 352  Q
    ||||||||||||||||||||||||||||    
T  28704063 gtgtattgtgcaacgtgagttaactcac 28704090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 140 - 387
Target Start/End: Original strand, 34016002 - 34016239
Alignment:
Q  140 gaattctgctcattatccaaatggaatcgctcattccgaaagtaaatgatcgaaatgcccctacgaaagttaacatgcgctacagaaaattataacgtaa 239  Q
    ||||||||||||||| | ||||||| ||||||||||| |||||||||||  |||||||||||||  | |||||||||| |||  |  ||||| |||||||    
T  34016002 gaattctgctcattacctaaatggattcgctcattcccaaagtaaatgactgaaatgcccctacacatgttaacatgcactagtgggaattacaacgtaa 34016101  T
Q  240 cttaaaataaatagcgtgacttaacacgcgctactgttatttgtgagttatttgttgaata-cttagcgcaggttaacatgcgctagtgtattgtgcaac 338  Q
    ||||| |||  | ||||   |||||| ||||||         ||||  ||||||| ||||| ||||||| | |||||||||||||| |||| |||| |||    
T  34016102 cttaagatacgttgcgtaggttaacatgcgcta---------gtga--tatttgtagaataacttagcgtaagttaacatgcgctaatgtaatgtgtaac 34016190  T
Q  339 gtgagttaactcacattcatagcagacaacagaaactgcaataaatgca 387  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  34016191 gtgagttaactaacgttcatagcagacaacagaaactgcaataaatgca 34016239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 338 - 425
Target Start/End: Original strand, 28678116 - 28678203
Alignment:
Q  338 cgtgagttaactcacattcatagcagacaacagaaactgcaataaatgcatgcaagtacagaattgtcttttgaaacatctagaatga 425  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||  |||| |||| ||||||||||  ||||||||||    
T  28678116 cgtgagttaactcacattcatagcagacaacagaaactgcaataaatgcaggcatttacataattatcttttgaaaagtctagaatga 28678203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 338 - 437
Target Start/End: Original strand, 28704108 - 28704207
Alignment:
Q  338 cgtgagttaactcacattcatagcagacaacagaaactgcaataaatgcatgcaagtacagaattgtcttttgaaacatctagaatgatccataatcacg 437  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||| |||  ||||||| ||||||||||||  |||||||||| || ||||||||    
T  28704108 cgtgagttaactcatgttcatagcagacaacagaaactgcaataaatgcaggcagttacagaactgtcttttgaaaagtctagaatgacccgtaatcacg 28704207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 146 - 264
Target Start/End: Complemental strand, 6706107 - 6705989
Alignment:
Q  146 tgctcattatccaaatggaatcgctcattccgaaagtaaatgatcgaaatgcccctacgaaagttaacatgcgctacagaaaattataacgtaacttaaa 245  Q
    ||||||||||||||||||| ||||||||| | |||||||||||  |||||||||||||| | ||||||||||||||  | |||||| |||||| |||||     
T  6706107 tgctcattatccaaatggattcgctcatttccaaagtaaatgactgaaatgcccctacgcatgttaacatgcgctagtgcaaattacaacgtatcttaac 6706008  T
Q  246 ataaatagcgtgacttaac 264  Q
    |||  | ||||||||||||    
T  6706007 atatgttgcgtgacttaac 6705989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 140 - 352
Target Start/End: Original strand, 759160 - 759362
Alignment:
Q  140 gaattctgctcattatccaaatggaatcgctcattccgaaagtaaatgatcgaaatgcccctacgaaagttaacatgcgctacagaaaattataacgtaa 239  Q
    ||||||||||||||| | ||||||| ||| ||||||| ||||||||||| |||||||| | |||| | ||||||||| | ||  | |||||| |||||||    
T  759160 gaattctgctcattacctaaatggattcgatcattcccaaagtaaatgaccgaaatgctcatacgcatgttaacatgtgttagtgtaaattacaacgtaa 759259  T
Q  240 cttaaaataaatagcgtgacttaacacgcgctactgttatttgt-gagttatttgttgaatacttagcgcaggttaacatgcgctagtgtattgtgcaac 338  Q
    ||||| |||  | | ||||||||||| |||||| |||||||||| |||| |           ||||| | | ||||||||||||||||||| |||| |||    
T  759260 cttaagatatgttgtgtgacttaacatgcgctagtgttatttgtagagtaa-----------cttagtgtaagttaacatgcgctagtgtaatgtgtaac 759348  T
Q  339 gtgagttaactcac 352  Q
    ||||||||||||||    
T  759349 gtgagttaactcac 759362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 76 - 134
Target Start/End: Original strand, 28668900 - 28668958
Alignment:
Q  76 aggccttgataactatgatttggaattggcatccaaaattgtaccaaattacatgaatg 134  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  28668900 aggccttgataactaagatttggaattagcatccaaaattgtaccaaattacatgaatg 28668958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 338 - 387
Target Start/End: Original strand, 30489953 - 30490002
Alignment:
Q  338 cgtgagttaactcacattcatagcagacaacagaaactgcaataaatgca 387  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  30489953 cgtgagttaactcacgttcatagcagacaacagaaactgcaataaatgca 30490002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 387
Target Start/End: Complemental strand, 38740524 - 38740475
Alignment:
Q  338 cgtgagttaactcacattcatagcagacaacagaaactgcaataaatgca 387  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  38740524 cgtgagttaactcacgttcgtagcagacaacagaaactgcaataaatgca 38740475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 137 - 218
Target Start/End: Complemental strand, 33144265 - 33144184
Alignment:
Q  137 ttagaattctgctcattatccaaatggaatcgctcattccgaaagtaaatgatcgaaatgcccctacgaaagttaacatgcg 218  Q
    ||||||||||| |||||| |||||    |||||||||||| ||||||||||| ||||||||||||||| | |||||| ||||    
T  33144265 ttagaattctgttcattacccaaacaatatcgctcattcctaaagtaaatgaccgaaatgcccctacgcatgttaacttgcg 33144184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 340 - 384
Target Start/End: Original strand, 759382 - 759426
Alignment:
Q  340 tgagttaactcacattcatagcagacaacagaaactgcaataaat 384  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||    
T  759382 tgagttaactcacgttcgtagcagacaacagaaactgcaataaat 759426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 140 - 203
Target Start/End: Original strand, 17636344 - 17636407
Alignment:
Q  140 gaattctgctcattatccaaatggaatcgctcattccgaaagtaaatgatcgaaatgcccctac 203  Q
    ||||||||||||||| | ||||||| ||||||||||| ||| |||||||| ||||| |||||||    
T  17636344 gaattctgctcattacctaaatggattcgctcattcccaaaataaatgattgaaatacccctac 17636407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 140 - 222
Target Start/End: Complemental strand, 34017697 - 34017615
Alignment:
Q  140 gaattctgctcattatccaaatggaatcgctcattccgaaagtaaatgatcgaaatgcccctacgaaagttaacatgcgctac 222  Q
    |||||||||||||||  |||||||   ||||||||   ||||||||||| |||||| |||||||| |||| ||||||||||||    
T  34017697 gaattctgctcattactcaaatggttccgctcattttcaaagtaaatgaccgaaatacccctacgcaagtaaacatgcgctac 34017615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 286 - 352
Target Start/End: Complemental strand, 38740608 - 38740542
Alignment:
Q  286 gttatttgttgaatacttagcgcaggttaacatgcgctagtgtattgtgcaacgtgagttaactcac 352  Q
    ||||||| | ||| |||||||  | ||||||||||||||||||| |||| |||||||||||||||||    
T  38740608 gttatttttagaaaacttagcatatgttaacatgcgctagtgtaatgtgtaacgtgagttaactcac 38740542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 213
Target Start/End: Original strand, 1145140 - 1145214
Alignment:
Q  139 agaattctgctcattatccaaatggaatcgctcattccgaaagtaaatgatcgaaatgcccctacgaaagttaac 213  Q
    |||||| |||||||||||||||  |  ||||||||||| ||||||||||| | ||||||| ||||| | ||||||    
T  1145140 agaattatgctcattatccaaacagtttcgctcattcccaaagtaaatgaccaaaatgcctctacgcatgttaac 1145214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 141 - 187
Target Start/End: Original strand, 4845302 - 4845348
Alignment:
Q  141 aattctgctcattatccaaatggaatcgctcattccgaaagtaaatg 187  Q
    ||||||||||||||| ||||| | |||||||||||| ||||||||||    
T  4845302 aattctgctcattattcaaatagtatcgctcattcctaaagtaaatg 4845348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 387
Target Start/End: Complemental strand, 5506528 - 5506495
Alignment:
Q  354 ttcatagcagacaacagaaactgcaataaatgca 387  Q
    ||||||||||||| ||||||||||||||||||||    
T  5506528 ttcatagcagacagcagaaactgcaataaatgca 5506495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 140 - 204
Target Start/End: Complemental strand, 17644678 - 17644614
Alignment:
Q  140 gaattctgctcattatccaaatggaatcgctcattccgaaagtaaatgatcgaaatgcccctacg 204  Q
    ||||| ||||||||| | ||||||| ||||||||||| ||||||||||  | |||| ||||||||    
T  17644678 gaattgtgctcattaccgaaatggattcgctcattcccaaagtaaatgtccaaaatacccctacg 17644614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 172; Significance: 3e-92; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 140 - 387
Target Start/End: Complemental strand, 34279639 - 34279392
Alignment:
Q  140 gaattctgctcattatccaaatggaatcgctcattccgaaagtaaatgatcgaaatgcccctacgaaagttaacatgcgctacagaaaattataacgtaa 239  Q
    |||||||||||||||   ||||||| ||||||||||| ||||||||||||||||||||||||||  | ||||||||||| ||  | ||||||||||||||    
T  34279639 gaattctgctcattacttaaatggattcgctcattcctaaagtaaatgatcgaaatgcccctacacatgttaacatgcgttagtgcaaattataacgtaa 34279540  T
Q  240 cttaaaataaatagcgtgacttaacacgcgctactgttatttgtgagttatttgttgaatacttagcgcaggttaacatgcgctagtgtattgtgcaacg 339  Q
    ||||| |||| ||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  34279539 cttaagataagtagcgtgacttaacatgcgctagtgttatttgtgagttatttgttgaatgcttagcgcaagttaacatgcgctagtgtattgtgcaacg 34279440  T
Q  340 tgagttaactcacattcatagcagacaacagaaactgcaataaatgca 387  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  34279439 tgagttaactcacgttcatagcagacaacagaaactgcaataaatgca 34279392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 137 - 352
Target Start/End: Complemental strand, 5967318 - 5967103
Alignment:
Q  137 ttagaattctgctcattatccaaatggaatcgctcattccgaaagtaaatgatcgaaatgcccctacgaaagttaacatgcgctacagaaaattataacg 236  Q
    |||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||  | |||||||||||    
T  5967318 ttagaattctgctcattacccaaatggattcgctcattcccaaagtaaatgatcgaaatgcccctacgcatgttaacatgcgctagtgcaaattataacg 5967219  T
Q  237 taacttaaaataaatagcgtgacttaacacgcgctactgttatttgtgagttatttgttgaatacttagcgcaggttaacatgcgctagtgtattgtgca 336  Q
    |||||||| |||| ||| ||||||||||| |||||| ||||||||||| |||||||||||||| ||||||||| ||||||||||||||| |||||||| |    
T  5967218 taacttaagataagtagtgtgacttaacatgcgctagtgttatttgtgtgttatttgttgaatgcttagcgcaagttaacatgcgctagagtattgtgaa 5967119  T
Q  337 acgtgagttaactcac 352  Q
    ||||||||||||||||    
T  5967118 acgtgagttaactcac 5967103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 387
Target Start/End: Complemental strand, 5967085 - 5967036
Alignment:
Q  338 cgtgagttaactcacattcatagcagacaacagaaactgcaataaatgca 387  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  5967085 cgtgagttaactcacgttcatagcagacaaaagaaactgcaataaatgca 5967036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 140 - 239
Target Start/End: Original strand, 31762241 - 31762340
Alignment:
Q  140 gaattctgctcattatccaaatggaatcgctcattccgaaagtaaatgatcgaaatgcccctacgaaagttaacatgcgctacagaaaattataacgtaa 239  Q
    |||||||||||||||| |||||||| ||||||||||| ||||||||| | ||||||  ||||| | | |||||||||| |||  | ||||||| ||||||    
T  31762241 gaattctgctcattattcaaatggattcgctcattcccaaagtaaataaacgaaatatccctatgcatgttaacatgcactagtgcaaattattacgtaa 31762340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 140 - 218
Target Start/End: Complemental strand, 33220865 - 33220787
Alignment:
Q  140 gaattctgctcattatccaaatggaatcgctcattccgaaagtaaatgatcgaaatgcccctacgaaagttaacatgcg 218  Q
    ||||||||||||||| ||||||||  || |||||||| |||||||| | || ||||||||||||| | |||||||||||    
T  33220865 gaattctgctcattacccaaatggtttcactcattcccaaagtaaaagttcaaaatgcccctacgcatgttaacatgcg 33220787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 140 - 213
Target Start/End: Complemental strand, 43641051 - 43640978
Alignment:
Q  140 gaattctgctcattatccaaatggaatcgctcattccgaaagtaaatgatcgaaatgcccctacgaaagttaac 213  Q
    ||||||||||||||| ||||||||  | ||||||| | ||||||||||||| || |||||||||| | ||||||    
T  43641051 gaattctgctcattacccaaatggtttggctcatttccaaagtaaatgatcaaattgcccctacgcatgttaac 43640978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 221
Target Start/End: Complemental strand, 4640873 - 4640792
Alignment:
Q  140 gaattctgctcattatccaaatggaatcgctcattccgaaagtaaatgatcgaaatgcccctacgaaagttaacatgcgcta 221  Q
    ||||||||||||||| |||||  | |||||||||| | |||||||| ||   ||||||||||||  || |||||||||||||    
T  4640873 gaattctgctcattacccaaactgtatcgctcatttccaaagtaaaagactaaaatgcccctacacaacttaacatgcgcta 4640792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 185
Target Start/End: Original strand, 9418587 - 9418632
Alignment:
Q  140 gaattctgctcattatccaaatggaatcgctcattccgaaagtaaa 185  Q
    ||||||||||||||| ||||||||  ||||||||||| ||||||||    
T  9418587 gaattctgctcattacccaaatggtttcgctcattcccaaagtaaa 9418632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 138; Significance: 5e-72; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 139 - 352
Target Start/End: Original strand, 15040680 - 15040893
Alignment:
Q  139 agaattctgctcattatccaaatggaatcgctcattccgaaagtaaatgatcgaaatgcccctacgaaagttaacatgcgctacagaaaattataacgta 238  Q
    |||||||||||||||| ||||||||| ||||||||||| |||||||||||  |||||||||||||| | |||||||||| |||  | |||||||||||||    
T  15040680 agaattctgctcattacccaaatggattcgctcattcccaaagtaaatgactgaaatgcccctacgcatgttaacatgcactagtgcaaattataacgta 15040779  T
Q  239 acttaaaataaatagcgtgacttaacacgcgctactgttatttgtgagttatttgttgaatacttagcgcaggttaacatgcgctagtgtattgtgcaac 338  Q
     ||||| |||||||||||||||||||| | |||| |||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||    
T  15040780 gcttaagataaatagcgtgacttaacatgtgctagtgttatttgtgagttatttgttgaatgcttagtgcaagttaacatgcgctagtgtattgtgcaac 15040879  T
Q  339 gtgagttaactcac 352  Q
    ||||||||||||||    
T  15040880 gtgagttaactcac 15040893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 146 - 352
Target Start/End: Original strand, 34082845 - 34083051
Alignment:
Q  146 tgctcattatccaaatggaatcgctcattccgaaagtaaatgatcgaaatgcccctacgaaagttaacatgcgctacagaaaattataacgtaacttaaa 245  Q
    ||||||||  ||||||| | ||||||||| | ||||||||||||| |||||| |||||| | |||||||||||||     |||||||||| ||||||||     
T  34082845 tgctcattgcccaaatgaattcgctcatttccaaagtaaatgatcaaaatgctcctacgcatgttaacatgcgctggtacaaattataacataacttaag 34082944  T
Q  246 ataaatagcgtgacttaacacgcgctactgttatttgtgagttatttgttgaatacttagcgcaggttaacatgcgctagtgtattgtgcaacgtgagtt 345  Q
    |||| ||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||| ||||||||||    
T  34082945 ataagtagcgtgacttaacatgcgctagtgttatttgtgagttatttgttgaatgcttagcgcaagttaacatgcactagtgtattgtgaaacgtgagtt 34083044  T
Q  346 aactcac 352  Q
    |||||||    
T  34083045 aactcac 34083051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 140 - 349
Target Start/End: Complemental strand, 19872219 - 19872010
Alignment:
Q  140 gaattctgctcattatccaaatggaatcgctcattccgaaagtaaatgatcgaaatgcccctacgaaagttaacatgcgctacagaaaattataacgtaa 239  Q
    ||||||||| ||||| | ||||| | ||||||||||| ||| |||||||   ||||||| ||||| | ||||||||||| ||  | ||| ||||||||||    
T  19872219 gaattctgcccattacctaaatgaattcgctcattcctaaaataaatgactaaaatgcctctacgcatgttaacatgcgttagtgcaaactataacgtaa 19872120  T
Q  240 cttaaaataaatagcgtgacttaacacgcgctactgttatttgtgagttatttgttgaatacttagcgcaggttaacatgcgctagtgtattgtgcaacg 339  Q
    ||||| |||| ||||||||||||| | | | || |||||||||||||||| || | |||| ||||||||| |||||||||||||||||||||||||||||    
T  19872119 cttaagataagtagcgtgacttaaaatgtgttagtgttatttgtgagttacttatcgaatgcttagcgcaagttaacatgcgctagtgtattgtgcaacg 19872020  T
Q  340 tgagttaact 349  Q
    ||||||||||    
T  19872019 tgagttaact 19872010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 135 - 264
Target Start/End: Complemental strand, 53814644 - 53814515
Alignment:
Q  135 tcttagaattctgctcattatccaaatggaatcgctcattccgaaagtaaatgatcgaaatgcccctacgaaagttaacatgcgctacagaaaattataa 234  Q
    |||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||| ||||||||||||| | ||||| ||||||||  | |||||| ||    
T  53814644 tcttagaattctgctcattacccaaatggattcgctcattcccaaagtaaatgatcaaaatgcccctacgcatgttaatatgcgctagtgcaaattaaaa 53814545  T
Q  235 cgtaacttaaaataaatagcgtgacttaac 264  Q
    |||||||||| |||  |  |||||||||||    
T  53814544 cgtaacttaacatacgttacgtgacttaac 53814515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 146 - 272
Target Start/End: Original strand, 7665739 - 7665865
Alignment:
Q  146 tgctcattatccaaatggaatcgctcattccgaaagtaaatgatcgaaatgcccctacgaaagttaacatgcgctacagaaaattataacgtaacttaaa 245  Q
    ||||||||  ||||||||| ||||||||||  ||||||||||| |||||||||| || | | ||||||||||||||  | |||||||||||||||||||     
T  7665739 tgctcatttcccaaatggattcgctcattcgcaaagtaaatgaccgaaatgcccttatgcatgttaacatgcgctagtgcaaattataacgtaacttaag 7665838  T
Q  246 ataaatagcgtgacttaacacgcgcta 272  Q
    |||| ||||||||||||||| ||||||    
T  7665839 ataagtagcgtgacttaacatgcgcta 7665865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 140 - 348
Target Start/End: Original strand, 39645774 - 39645970
Alignment:
Q  140 gaattctgctcattatccaaatggaatcgctcattccgaaagtaaatgatcgaaatgcccctacgaaagttaacatgcgctacagaaaattataacgtaa 239  Q
    |||||| |||||||||| ||||||| ||| ||||||  |||||||||||||||||||  |||||| | ||||||||||||||  | ||||||||| ||||    
T  39645774 gaattccgctcattatctaaatggattcgttcattcgcaaagtaaatgatcgaaatgttcctacgcatgttaacatgcgctagtgcaaattataatgtaa 39645873  T
Q  240 cttaaaataaatagcgtgacttaacacgcgctactgttatttgtgagttatttgttgaatacttagcgcaggttaacatgcgctagtgtattgtgcaacg 339  Q
    |||||  ||  | |||| | |||||| || |||           | ||||||||| |||||| ||||| | |||||||||||||||||||||||| ||||    
T  39645874 cttaagctacgttgcgtaagttaacatgcacta-----------gtgttatttgtagaatac-tagcgtaagttaacatgcgctagtgtattgtgtaacg 39645961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 338 - 437
Target Start/End: Original strand, 39645992 - 39646090
Alignment:
Q  338 cgtgagttaactcacattcatagcagacaacagaaactgcaataaatgcatgcaagtacagaattgtcttttgaaacatctagaatgatccataatcacg 437  Q
    |||||| |||||||| ||||| |||||||||||||||||||||||||||| |||  ||||||| ||| ||||||||  |||||||||| || ||||||||    
T  39645992 cgtgagctaactcacgttcattgcagacaacagaaactgcaataaatgcaggcagttacagaactgt-ttttgaaaagtctagaatgacccgtaatcacg 39646090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 339 - 387
Target Start/End: Original strand, 7665912 - 7665960
Alignment:
Q  339 gtgagttaactcacattcatagcagacaacagaaactgcaataaatgca 387  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  7665912 gtgagttaactcacgttcatagcagacaacagaaactgcaataaatgca 7665960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 336 - 387
Target Start/End: Original strand, 15040909 - 15040960
Alignment:
Q  336 aacgtgagttaactcacattcatagcagacaacagaaactgcaataaatgca 387  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  15040909 aacgttagttaactcacgttcatagcagacaacagaaactgcaataaatgca 15040960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 387
Target Start/End: Complemental strand, 19871989 - 19871940
Alignment:
Q  338 cgtgagttaactcacattcatagcagacaacagaaactgcaataaatgca 387  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  19871989 cgtgagttaactcacgttcatagcagacaacataaactgcaataaatgca 19871940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 341 - 387
Target Start/End: Complemental strand, 35069142 - 35069096
Alignment:
Q  341 gagttaactcacattcatagcagacaacagaaactgcaataaatgca 387  Q
    |||||||||||| ||||||||||||| ||||||||||||||||||||    
T  35069142 gagttaactcacgttcatagcagacatcagaaactgcaataaatgca 35069096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 140 - 218
Target Start/End: Complemental strand, 53827739 - 53827661
Alignment:
Q  140 gaattctgctcattatccaaatggaatcgctcattccgaaagtaaatgatcgaaatgcccctacgaaagttaacatgcg 218  Q
    ||||||||||||||| | |||| | |||||||||||| ||||||||||  | ||||||||||||| | |||||||||||    
T  53827739 gaattctgctcattacctaaatagtatcgctcattcccaaagtaaatgtccaaaatgcccctacgcatgttaacatgcg 53827661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 338 - 387
Target Start/End: Original strand, 34084312 - 34084361
Alignment:
Q  338 cgtgagttaactcacattcatagcagacaacagaaactgcaataaatgca 387  Q
    ||||||||||||||| |||||||||||||||| |||| ||||||||||||    
T  34084312 cgtgagttaactcacgttcatagcagacaacaaaaacggcaataaatgca 34084361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 140 - 221
Target Start/End: Original strand, 53824291 - 53824371
Alignment:
Q  140 gaattctgctcattatccaaatggaatcgctcattccgaaagtaaatgatcgaaatgcccctacgaaagttaacatgcgcta 221  Q
    |||||||||| |||| ||||||||||| ||||||||| |||||||||||  ||||||||| | || | ||||||||||||||    
T  53824291 gaattctgcttattacccaaatggaat-gctcattcccaaagtaaatgactgaaatgcccatgcgcatgttaacatgcgcta 53824371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 140 - 204
Target Start/End: Complemental strand, 35069524 - 35069460
Alignment:
Q  140 gaattctgctcattatccaaatggaatcgctcattccgaaagtaaatgatcgaaatgcccctacg 204  Q
    ||||||||||||||||| ||||||| ||| ||||| | ||||||||||| |||||||| ||||||    
T  35069524 gaattctgctcattatctaaatggattcgttcatttctaaagtaaatgaccgaaatgctcctacg 35069460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 140 - 218
Target Start/End: Complemental strand, 6162760 - 6162682
Alignment:
Q  140 gaattctgctcattatccaaatggaatcgctcattccgaaagtaaatgatcgaaatgcccctacgaaagttaacatgcg 218  Q
    ||||||||||||||| ||||||||   |||||||||| |||||||| |  | ||||||||||||| | |||||||||||    
T  6162760 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcg 6162682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 136 - 190
Target Start/End: Original strand, 44430414 - 44430468
Alignment:
Q  136 cttagaattctgctcattatccaaatggaatcgctcattccgaaagtaaatgatc 190  Q
    ||||||||||||||||||||||||||||  | ||||||||| |||||||| ||||    
T  44430414 cttagaattctgctcattatccaaatggttttgctcattcccaaagtaaaagatc 44430468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 140 - 221
Target Start/End: Original strand, 35485243 - 35485324
Alignment:
Q  140 gaattctgctcattatccaaatggaatcgctcattccgaaagtaaatgatcgaaatgcccctacgaaagttaacatgcgcta 221  Q
    |||||||||||||||||||||  | |||||||||||  |||||||||| |  |||||||||| |  | ||||||||||||||    
T  35485243 gaattctgctcattatccaaacagtatcgctcattcttaaagtaaatgtttaaaatgcccctgcacatgttaacatgcgcta 35485324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 352
Target Start/End: Original strand, 7665853 - 7665893
Alignment:
Q  312 ttaacatgcgctagtgtattgtgcaacgtgagttaactcac 352  Q
    ||||||||||||||||||||||| ||||||| |||||||||    
T  7665853 ttaacatgcgctagtgtattgtgaaacgtgaattaactcac 7665893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 222
Target Start/End: Original strand, 4969872 - 4969957
Alignment:
Q  137 ttagaattctgctcattatccaaatggaatcgctcattccgaaagtaaatgatcg-aaatgcccctacgaaagttaacatgcgctac 222  Q
    |||||||||||||||||| ||||||||   |||||||||| |||||||| | ||| |||| ||||||||  ||||||| ||||||||    
T  4969872 ttagaattctgctcattacccaaatggttccgctcattcccaaagtaaaag-tcgaaaatacccctacgtgagttaacttgcgctac 4969957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 212
Target Start/End: Original strand, 40516972 - 40517046
Alignment:
Q  138 tagaattctgctcattatccaaatggaatcgctcattccgaaagtaaatgatcgaaatgcccctacgaaagttaa 212  Q
    |||||||| |||| ||| | ||||||| | ||||||||| ||||||||||||| ||||| | ||||| |||||||    
T  40516972 tagaattcggctctttacctaaatggatttgctcattcctaaagtaaatgatcaaaatgtctctacgtaagttaa 40517046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 190
Target Start/End: Complemental strand, 13843670 - 13843621
Alignment:
Q  141 aattctgctcattatccaaatggaatcgctcattccgaaagtaaatgatc 190  Q
    |||||||||||||| ||||||||  ||||||||||| |||||||| ||||    
T  13843670 aattctgctcattacccaaatggtttcgctcattcccaaagtaaaagatc 13843621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 187
Target Start/End: Original strand, 16931445 - 16931493
Alignment:
Q  139 agaattctgctcattatccaaatggaatcgctcattccgaaagtaaatg 187  Q
    ||||||||||||||||| ||||| | ||||||| |||| ||||||||||    
T  16931445 agaattctgctcattattcaaatagtatcgctcgttcctaaagtaaatg 16931493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 178 - 222
Target Start/End: Complemental strand, 39649922 - 39649878
Alignment:
Q  178 aaagtaaatgatcgaaatgcccctacgaaagttaacatgcgctac 222  Q
    |||||||||||||||||||  | |||| |||||||||||||||||    
T  39649922 aaagtaaatgatcgaaatgttcatacgcaagttaacatgcgctac 39649878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 213
Target Start/End: Original strand, 50663872 - 50663948
Alignment:
Q  137 ttagaattctgctcattatccaaatggaatcgctcattccgaaagtaaatgatcgaaatgcccctacgaaagttaac 213  Q
    |||||||||||||| | | |||||||   ||||||||||| ||||||||| | | ||||||||||||| | ||||||    
T  50663872 ttagaattctgctcttcacccaaatgatttcgctcattcccaaagtaaataaccaaaatgcccctacgcatgttaac 50663948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 136; Significance: 9e-71; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 137 - 352
Target Start/End: Complemental strand, 5253 - 5038
Alignment:
Q  137 ttagaattctgctcattatccaaatggaatcgctcattccgaaagtaaatgatcgaaatgcccctacgaaagttaacatgcgctacagaaaattataacg 236  Q
    ||||| |||||||||||| ||||||||| ||||||||||| ||||||||||| ||||||||||||||| | ||||||||||||||  | |||||||||||    
T  5253 ttagatttctgctcattacccaaatggattcgctcattcccaaagtaaatgaccgaaatgcccctacgcatgttaacatgcgctagtgcaaattataacg 5154  T
Q  237 taacttaaaataaatagcgtgacttaacacgcgctactgttatttgtgagttatttgttgaatacttagcgcaggttaacatgcgctagtgtattgtgca 336  Q
    |||||||| ||||  ||||||||||||||  ||||| |||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||| |    
T  5153 taacttaagataagcagcgtgacttaacatacgctagtgttatttgtgagttatttgttgaatgcttagtgcaagttaacatgcgctagtgtattgtgaa 5054  T
Q  337 acgtgagttaactcac 352  Q
    ||||||||||||||||    
T  5053 acgtgagttaactcac 5038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 144 - 352
Target Start/End: Original strand, 38386178 - 38386386
Alignment:
Q  144 tctgctcattatccaaatggaatcgctcattccgaaagtaaatgatcgaaatgcccctacgaaagttaacatgcgctacagaaaattataacgtaactta 243  Q
    ||||||||||||||||||||| ||||||||| | |||||||||||| |||||||||||||| | ||||||||||||||  | ||||||||||||||||||    
T  38386178 tctgctcattatccaaatggattcgctcatttccaaagtaaatgattgaaatgcccctacgcatgttaacatgcgctagtgcaaattataacgtaactta 38386277  T
Q  244 aaataaatagcgtgacttaacacgcgctactgttatttgtgagttatttgttgaatacttagcgcaggttaacatgcgctagtgtattgtgcaacgtgag 343  Q
    | |||| ||||||||||| ||| |||||| |||||||||| ||||||||||||||| ||||||||| ||||||||| |||||||||||||| ||||||||    
T  38386278 agataagtagcgtgactttacatgcgctagtgttatttgtaagttatttgttgaatgcttagcgcaagttaacatgtgctagtgtattgtgaaacgtgag 38386377  T
Q  344 ttaactcac 352  Q
    |||||||||    
T  38386378 ttaactcac 38386386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 143 - 352
Target Start/End: Original strand, 38047649 - 38047858
Alignment:
Q  143 ttctgctcattatccaaatggaatcgctcattccgaaagtaaatgatcgaaatgcccctacgaaagttaacatgcgctacagaaaattataacgtaactt 242  Q
    ||||||| |||||| |||| || ||||| |||   ||| ||||||||| ||||| | ||||| | ||||||||||||||    |||||||||||||||||    
T  38047649 ttctgcttattatctaaatagattcgcttatttttaaaataaatgatcaaaatgtctctacgcatgttaacatgcgctagtacaaattataacgtaactt 38047748  T
Q  243 aaaataaatagcgtgacttaacacgcgctactgttatttgtgagttatttgttgaatacttagcgcaggttaacatgcgctagtgtattgtgcaacgtga 342  Q
    || |||| ||||||||||||||| |||||| ||||||||||||||||||||||||||  |||||||| |||||||||||||||||||||||| |||||||    
T  38047749 aagataagtagcgtgacttaacatgcgctagtgttatttgtgagttatttgttgaatgtttagcgcaagttaacatgcgctagtgtattgtgaaacgtga 38047848  T
Q  343 gttaactcac 352  Q
    ||||||||||    
T  38047849 gttaactcac 38047858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 140 - 352
Target Start/End: Complemental strand, 19365473 - 19365262
Alignment:
Q  140 gaattctgctcattatccaaatggaatcgctcattccgaaagtaaatgatcgaaatgcccctacgaaagttaacatgcgctacagaaaattataacgtaa 239  Q
    ||||||||||||||| | ||||||| ||||||||||| |||  |||||| |||||| |||||||| |  |||||||||||||  | |||||| |||||||    
T  19365473 gaattctgctcattacctaaatggattcgctcattcccaaataaaatgaccgaaatacccctacgcattttaacatgcgctagtgcaaattagaacgtaa 19365374  T
Q  240 cttaaaataaatagcgtgacttaacacgcgctactgttatttgtgagttatttgttgaatacttagcgcaggttaacatgcgctagtgtattgtgcaacg 339  Q
     |||| |||  | |||| | |||||| || ||| ||||| ||||| ||||| ||||||||||||| || | |||||||||| ||| ||||||||  ||||    
T  19365373 tttaagatatgttgcgtaagttaacatgcactagtgttaattgtgtgttatctgttgaatactta-cgtatgttaacatgccctactgtattgtttaacg 19365275  T
Q  340 tgagttaactcac 352  Q
    |||||||||||||    
T  19365274 tgagttaactcac 19365262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 226 - 352
Target Start/End: Complemental strand, 8378102 - 8377976
Alignment:
Q  226 aaattataacgtaacttaaaataaatagcgtgacttaacacgcgctactgttatttgtgagttatttgttgaatacttagcgcaggttaacatgcgctag 325  Q
    ||||||||||||||||| | |||| | |||| | |||||| |||||| | ||||||||| ||||||||||||||||||| |  | |||||||||| |||     
T  8378102 aaattataacgtaacttcagataatttgcgtaagttaacatgcgctagtattatttgtgtgttatttgttgaatacttaacataagttaacatgcactaa 8378003  T
Q  326 tgtattgtgcaacgtgagttaactcac 352  Q
    |||||| || |||||||||||||||||    
T  8378002 tgtattatgtaacgtgagttaactcac 8377976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 387
Target Start/End: Complemental strand, 5020 - 4971
Alignment:
Q  338 cgtgagttaactcacattcatagcagacaacagaaactgcaataaatgca 387  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  5020 cgtgagttaactcacgttcatagcagacaacaaaaactgcaataaatgca 4971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 140 - 244
Target Start/End: Complemental strand, 5061806 - 5061702
Alignment:
Q  140 gaattctgctcattatccaaatggaatcgctcattccgaaagtaaatgatcgaaatgcccctacgaaagttaacatgcgctacagaaaattataacgtaa 239  Q
    ||||||||||||||| ||||||||| || |||||| | ||| ||||||| ||||||| |  |||| | ||||||||| ||||  | |||||| |||||||    
T  5061806 gaattctgctcattacccaaatggattcactcatttccaaaataaatgaacgaaatgtcgttacgcatgttaacatgtgctaatgcaaattacaacgtaa 5061707  T
Q  240 cttaa 244  Q
    |||||    
T  5061706 cttaa 5061702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 341 - 387
Target Start/End: Original strand, 38386407 - 38386453
Alignment:
Q  341 gagttaactcacattcatagcagacaacagaaactgcaataaatgca 387  Q
    |||||||||||  |||||||| |||||||||||||||||||||||||    
T  38386407 gagttaactcatgttcatagctgacaacagaaactgcaataaatgca 38386453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 140 - 221
Target Start/End: Complemental strand, 1537324 - 1537243
Alignment:
Q  140 gaattctgctcattatccaaatggaatcgctcattccgaaagtaaatgatcgaaatgcccctacgaaagttaacatgcgcta 221  Q
    ||||||||||||||| |||||  | |||| ||||||  |||||||||| || |||||||||| || | ||||||||||||||    
T  1537324 gaattctgctcattacccaaacagtatcgttcattctcaaagtaaatgttcaaaatgcccctgcgcatgttaacatgcgcta 1537243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 188
Target Start/End: Complemental strand, 33839520 - 33839472
Alignment:
Q  140 gaattctgctcattatccaaatggaatcgctcattccgaaagtaaatga 188  Q
    ||||||||||| ||||||||||||| ||||||||||  |||||||||||    
T  33839520 gaattctgctctttatccaaatggattcgctcattctcaaagtaaatga 33839472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 387
Target Start/End: Original strand, 38047884 - 38047922
Alignment:
Q  349 tcacattcatagcagacaacagaaactgcaataaatgca 387  Q
    |||| |||||||||||||||||||||| |||||||||||    
T  38047884 tcacgttcatagcagacaacagaaacttcaataaatgca 38047922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 174
Target Start/End: Original strand, 38790881 - 38790918
Alignment:
Q  137 ttagaattctgctcattatccaaatggaatcgctcatt 174  Q
    |||||||||||||||||||||||||||  |||||||||    
T  38790881 ttagaattctgctcattatccaaatggtttcgctcatt 38790918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 175
Target Start/End: Original strand, 44552025 - 44552061
Alignment:
Q  139 agaattctgctcattatccaaatggaatcgctcattc 175  Q
    |||||||||||||||||||||||||  ||||||||||    
T  44552025 agaattctgctcattatccaaatggtttcgctcattc 44552061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 135; Significance: 3e-70; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 138 - 352
Target Start/End: Complemental strand, 24974226 - 24974012
Alignment:
Q  138 tagaattctgctcattatccaaatggaatcgctcattccgaaagtaaatgatcgaaatgcccctacgaaagttaacatgcgctacagaaaattataacgt 237  Q
    |||| |||||||||||||||||||||| | ||||||||| ||||||||||| ||||||||||||||| | ||||||||||||||  | ||||||||| ||    
T  24974226 tagatttctgctcattatccaaatggatttgctcattcccaaagtaaatgaccgaaatgcccctacgcatgttaacatgcgctagtgcaaattataatgt 24974127  T
Q  238 aacttaaaataaatagcgtgacttaacacgcgctactgttatttgtgagttatttgttgaatacttagcgcaggttaacatgcgctagtgtattgtgcaa 337  Q
    ||||||| |||| ||||||||||||||| |||||| ||||||||||||||||||||||||||  ||||| || |||||||||||||||||||||||| ||    
T  24974126 aacttaagataagtagcgtgacttaacatgcgctagtgttatttgtgagttatttgttgaatgtttagctcaagttaacatgcgctagtgtattgtgaaa 24974027  T
Q  338 cgtgagttaactcac 352  Q
    |||||||||||||||    
T  24974026 cgtgagttaactcac 24974012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 140 - 351
Target Start/End: Complemental strand, 55527991 - 55527780
Alignment:
Q  140 gaattctgctcattatccaaatggaatcgctcattccgaaagtaaatgatcgaaatgcccctacgaaagttaacatgcgctacagaaaattataacgtaa 239  Q
    ||||||||||||||||  ||||||| ||||||||| | |||| |||||| ||||||||||||||| | ||||||| ||||||  | ||||||||||||||    
T  55527991 gaattctgctcattatttaaatggattcgctcatttccaaagcaaatgaccgaaatgcccctacgcatgttaacacgcgctagtgcaaattataacgtaa 55527892  T
Q  240 cttaaaataaatagcgtgacttaacacgcgctactgttatttgtgagttatttgttgaatacttagcgcaggttaacatgcgctagtgtattgtgcaacg 339  Q
    ||||| |||| ||||||||||||||| || ||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  55527891 cttaagataagtagcgtgacttaacatgcactagtgttatttgtgagttatttgttgaatgcttagcgcaagttaacatgcgctagtgtattgtgcaacg 55527792  T
Q  340 tgagttaactca 351  Q
    ||||||||||||    
T  55527791 tgagttaactca 55527780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 143 - 346
Target Start/End: Complemental strand, 36501940 - 36501737
Alignment:
Q  143 ttctgctcattatccaaatggaatcgctcattccgaaagtaaatgatcgaaatgcccctacgaaagttaacatgcgctacagaaaattataacgtaactt 242  Q
    |||||||||||| ||| ||||| ||||||||||| ||||||||||||||||||||||||||| | ||| |||||||||   | ||||||||||||||||     
T  36501940 ttctgctcattacccagatggattcgctcattcccaaagtaaatgatcgaaatgcccctacgcatgttgacatgcgctggtgcaaattataacgtaactc 36501841  T
Q  243 aaaataaatagcgtgacttaacacgcgctactgttatttgtgagttatttgttgaatacttagcgcaggttaacatgcgctagtgtattgtgcaacgtga 342  Q
    || |||| || |||||||||||| | |||| |||||||||||||||||||||||||| ||||||||| ||||| ||||| |||||||||||| |||||||    
T  36501840 aagataagtaacgtgacttaacatgtgctagtgttatttgtgagttatttgttgaatgcttagcgcaagttaatatgcggtagtgtattgtgaaacgtga 36501741  T
Q  343 gtta 346  Q
    ||||    
T  36501740 gtta 36501737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 140 - 351
Target Start/End: Complemental strand, 12586875 - 12586666
Alignment:
Q  140 gaattctgctcattatccaaatggaatcgctcattccgaaagtaaatgatcgaaatgcccctacgaaagttaacatgcgctacagaaaattataacgtaa 239  Q
    |||||| ||||||||  |||||||| ||||||||| | ||| ||||||| ||||||| ||||||| | ||||||||||||||  | ||||||||||||||    
T  12586875 gaattcagctcattactcaaatggattcgctcatttccaaa-taaatgaccgaaatgtccctacgcatgttaacatgcgctagtgcaaattataacgtaa 12586777  T
Q  240 cttaaaataaatagcgtgacttaacacgcgctactgttatttgtgagttatttgttgaatacttagcgcaggttaacatgcgctagtgtattgtgcaacg 339  Q
    ||||| |||| ||||||||||||||| || ||| |||||||||||||||| ||||||||| ||||||||| ||||| ||||| |||||||||||| || |    
T  12586776 cttaagataagtagcgtgacttaacatgcactagtgttatttgtgagtta-ttgttgaatgcttagcgcaagttaagatgcgttagtgtattgtgaaatg 12586678  T
Q  340 tgagttaactca 351  Q
    ||||||||||||    
T  12586677 tgagttaactca 12586666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 140 - 332
Target Start/End: Original strand, 45237411 - 45237602
Alignment:
Q  140 gaattctgctcattatccaaatggaatcgctcattccgaaagtaaatgatcgaaatgcccctacgaaagttaacatgcgctacagaaaattataacgtaa 239  Q
    |||||||||||||||  |||||||| ||||| ||| | ||||||||| |  |||||||||||| | | ||||||||||||||  | ||||||||||||||    
T  45237411 gaattctgctcattactcaaatggattcgcttatttctaaagtaaataactgaaatgcccctatgcatgttaacatgcgctagtgcaaattataacgtaa 45237510  T
Q  240 cttaaaataaatagcgtgacttaacacgcgctactgttatttgtgagttatttgttgaatacttagcgcaggttaacatgcgctagtgtattg 332  Q
    ||||| |||  | ||||    ||||| |||||| ||||||||||| || |||| |||||||||||  | | ||||||||||||||||||||||    
T  45237511 cttaagatacgttgcgtatgctaacatgcgctagtgttatttgtgtgtaattt-ttgaatacttaatgtaagttaacatgcgctagtgtattg 45237602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 338 - 437
Target Start/End: Original strand, 45244842 - 45244941
Alignment:
Q  338 cgtgagttaactcacattcatagcagacaacagaaactgcaataaatgcatgcaagtacagaattgtcttttgaaacatctagaatgatccataatcacg 437  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||||||| |||  || |||| |||||||||||| || |||||||| || ||||||||    
T  45244842 cgtgagttaactcacgttcatagcagacaacaaaaactgcaataaatgcaggcagttaaagaagtgtcttttgaaaaatgtagaatgacccgtaatcacg 45244941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 338 - 387
Target Start/End: Complemental strand, 24973994 - 24973945
Alignment:
Q  338 cgtgagttaactcacattcatagcagacaacagaaactgcaataaatgca 387  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  24973994 cgtgagttaactcacgttcatagcagacaacagaaactgcaataaatgca 24973945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 140 - 264
Target Start/End: Complemental strand, 51719852 - 51719728
Alignment:
Q  140 gaattctgctcattatccaaatggaatcgctcattccgaaagtaaatgatcgaaatgcccctacgaaagttaacatgcgctacagaaaattataacgtaa 239  Q
    |||||||||| |||| ||||||||| ||||| ||| | ||||||||| | |||||| |||||||| ||||||||||||| ||  | |||||| |||||||    
T  51719852 gaattctgcttattacccaaatggattcgcttatttccaaagtaaataaccgaaatacccctacgtaagttaacatgcgttaatgtaaattacaacgtaa 51719753  T
Q  240 cttaaaataaatagcgtgacttaac 264  Q
    | ||| |||  | ||||||||||||    
T  51719752 cgtaacatatgttgcgtgacttaac 51719728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 387
Target Start/End: Complemental strand, 23283633 - 23283584
Alignment:
Q  338 cgtgagttaactcacattcatagcagacaacagaaactgcaataaatgca 387  Q
    |||||||||||| || ||||||||||||||||||||||||||||||||||    
T  23283633 cgtgagttaacttacgttcatagcagacaacagaaactgcaataaatgca 23283584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 387
Target Start/End: Complemental strand, 55527761 - 55527712
Alignment:
Q  338 cgtgagttaactcacattcatagcagacaacagaaactgcaataaatgca 387  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  55527761 cgtgagttaactcacgttcattgcagacaacagaaactgcaataaatgca 55527712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 140 - 222
Target Start/End: Original strand, 23283214 - 23283296
Alignment:
Q  140 gaattctgctcattatccaaatggaatcgctcattccgaaagtaaatgatcgaaatgcccctacgaaagttaacatgcgctac 222  Q
    |||||||||| ||||| ||||| |  ||||| ||| | ||||||||||| ||||||||||||| | |||||||||||||||||    
T  23283214 gaattctgctgattattcaaatagtttcgcttatttccaaagtaaatgaccgaaatgcccctatgcaagttaacatgcgctac 23283296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 141 - 202
Target Start/End: Original strand, 27992116 - 27992177
Alignment:
Q  141 aattctgctcattatccaaatggaatcgctcattccgaaagtaaatgatcgaaatgccccta 202  Q
    |||| |||||||||| |||||||| | ||||||||| ||||||||||| |||||||||||||    
T  27992116 aattatgctcattattcaaatggatttgctcattcccaaagtaaatgaccgaaatgccccta 27992177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 140 - 217
Target Start/End: Complemental strand, 34235782 - 34235705
Alignment:
Q  140 gaattctgctcattatccaaatggaatcgctcattccgaaagtaaatgatcgaaatgcccctacgaaagttaacatgc 217  Q
    ||||| ||||||||| ||||||||   |||||||||| ||||||||||| |||||||||| |||| | ||||||||||    
T  34235782 gaattatgctcattacccaaatggttccgctcattcctaaagtaaatgaccgaaatgcccatacgcatgttaacatgc 34235705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 140 - 223
Target Start/End: Complemental strand, 45247059 - 45246976
Alignment:
Q  140 gaattctgctcattatccaaatggaatcgctcattccgaaagtaaatgatcgaaatgcccctacgaaagttaacatgcgctaca 223  Q
    ||||| |||||||||| |||||||   || ||||| | ||||||||||||| ||||| ||||||| | ||||||||||||||||    
T  45247059 gaattatgctcattattcaaatggttccgttcatttctaaagtaaatgatcaaaatgtccctacgtatgttaacatgcgctaca 45246976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 140 - 218
Target Start/End: Complemental strand, 33164583 - 33164505
Alignment:
Q  140 gaattctgctcattatccaaatggaatcgctcattccgaaagtaaatgatcgaaatgcccctacgaaagttaacatgcg 218  Q
    ||||||||||||||| ||||||||   |||||||||  ||||||||||  | ||||||||||||| | |||||||||||    
T  33164583 gaattctgctcattacccaaatggttccgctcattctcaaagtaaatgtccaaaatgcccctacgcatgttaacatgcg 33164505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 311 - 352
Target Start/End: Complemental strand, 23283692 - 23283651
Alignment:
Q  311 gttaacatgcgctagtgtattgtgcaacgtgagttaactcac 352  Q
    ||||||||||||||||||| |||| |||||||||||||||||    
T  23283692 gttaacatgcgctagtgtaatgtgtaacgtgagttaactcac 23283651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 140 - 213
Target Start/End: Original strand, 54208180 - 54208253
Alignment:
Q  140 gaattctgctcattatccaaatggaatcgctcattccgaaagtaaatgatcgaaatgcccctacgaaagttaac 213  Q
    ||||| ||||| ||||||||||||  | ||||||||| ||||||||||||| |||| |||||||  ||||||||    
T  54208180 gaattatgctctttatccaaatggttttgctcattcccaaagtaaatgatcaaaatacccctactcaagttaac 54208253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 220
Target Start/End: Complemental strand, 46817510 - 46817430
Alignment:
Q  140 gaattctgctcattatccaaatggaatcgctcattccgaaagtaaatgatcgaaatgcccctacgaaagttaacatgcgct 220  Q
    ||||||||||||||| |  ||  | |||||||||||  |||||||||| || ||||||||||||| | |||||||||||||    
T  46817510 gaattctgctcattacctgaacagtatcgctcattcttaaagtaaatgttcaaaatgcccctacgcatgttaacatgcgct 46817430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 186
Target Start/End: Original strand, 55312075 - 55312115
Alignment:
Q  146 tgctcattatccaaatggaatcgctcattccgaaagtaaat 186  Q
    |||||||||| |||||||||||||||||||| |||||||||    
T  55312075 tgctcattattcaaatggaatcgctcattcccaaagtaaat 55312115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 185
Target Start/End: Original strand, 628088 - 628133
Alignment:
Q  140 gaattctgctcattatccaaatggaatcgctcattccgaaagtaaa 185  Q
    ||||||||||||||| ||||||||  ||||||||||| ||||||||    
T  628088 gaattctgctcattacccaaatggtttcgctcattcctaaagtaaa 628133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 135; Significance: 3e-70; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 138 - 352
Target Start/End: Original strand, 33617642 - 33617856
Alignment:
Q  138 tagaattctgctcattatccaaatggaatcgctcattccgaaagtaaatgatcgaaatgcccctacgaaagttaacatgcgctacagaaaattataacgt 237  Q
    ||||||| ||||||||| ||||||||| ||||||||||  ||||||||||| ||||||||||||| | | ||||||||||||||  | ||||||||||||    
T  33617642 tagaattatgctcattacccaaatggattcgctcattctcaaagtaaatgaccgaaatgcccctatgcatgttaacatgcgctagtgcaaattataacgt 33617741  T
Q  238 aacttaaaataaatagcgtgacttaacacgcgctactgttatttgtgagttatttgttgaatacttagcgcaggttaacatgcgctagtgtattgtgcaa 337  Q
    ||||||| |||| ||||||||||||||| |||||| |||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||    
T  33617742 aacttaagataagtagcgtgacttaacatgcgctagtgttatttgtgagttatttgttcaatgcttagcgcaggttaacatgtgctagtgtattgtgcaa 33617841  T
Q  338 cgtgagttaactcac 352  Q
     ||||||||||||||    
T  33617842 tgtgagttaactcac 33617856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 226 - 352
Target Start/End: Original strand, 33617914 - 33618040
Alignment:
Q  226 aaattataacgtaacttaaaataaatagcgtgacttaacacgcgctactgttatttgtgagttatttgttgaatacttagcgcaggttaacatgcgctag 325  Q
    ||||||||||||||||||| |||| ||||||||||||||| |||||| |||||||||||||||||||||| ||| ||||||||| ||||||||| |||||    
T  33617914 aaattataacgtaacttaagataagtagcgtgacttaacatgcgctagtgttatttgtgagttatttgttcaatgcttagcgcaagttaacatgtgctag 33618013  T
Q  326 tgtattgtgcaacgtgagttaactcac 352  Q
    |||||||||||||||||||||||||||    
T  33618014 tgtattgtgcaacgtgagttaactcac 33618040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 138 - 351
Target Start/End: Original strand, 33401406 - 33401608
Alignment:
Q  138 tagaattctgctcattatccaaatggaatcgctcattccgaaagtaaatgatcgaaatgcccctacgaaagttaacatgcgctacagaaaattataacgt 237  Q
    ||||||| |||||||||  |||||||| ||||||||||  ||||||||||| |||||||||| || | | ||||||||||||||  | ||||||||||||    
T  33401406 tagaattttgctcattagtcaaatggattcgctcattctcaaagtaaatgaccgaaatgcccttatgcatgttaacatgcgctagtgcaaattataacgt 33401505  T
Q  238 aacttaaaataaatagcgtgacttaacacgcgctactgttatttgtgagttatttgttgaatacttagcgcaggttaacatgcgctagtgtattgtgcaa 337  Q
    ||||||| |||| ||||||||||||||| ||||||           | |||||||||||||| ||||||||| ||||||||| |||||||||||||||||    
T  33401506 aacttaagataagtagcgtgacttaacatgcgcta-----------gtgttatttgttgaatgcttagcgcaagttaacatgtgctagtgtattgtgcaa 33401594  T
Q  338 cgtgagttaactca 351  Q
    ||||||||||||||    
T  33401595 cgtgagttaactca 33401608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 138 - 352
Target Start/End: Complemental strand, 48027176 - 48026962
Alignment:
Q  138 tagaattctgctcattatccaaatggaatcgctcattccgaaagtaaatgatcgaaatgcccctacgaaagttaacatgcgctacagaaaattataacgt 237  Q
    ||||||||||||| |||   ||||||| ||||||||| | | | ||||||| ||||||||| |||   | ||||| ||||| ||  | ||||||||||||    
T  48027176 tagaattctgctctttagttaaatggattcgctcatttctataataaatgaccgaaatgcctctatacatgttaatatgcgttagtgcaaattataacgt 48027077  T
Q  238 aacttaaaataaatagcgtgacttaacacgcgctactgttatttgtgagttatttgttgaatacttagcgcaggttaacatgcgctagtgtattgtgcaa 337  Q
    || |||| |||| ||||||||||||| | |||||| |||||||||||||||||||||||||| |||| |||| ||||||||| |||||||||||||| ||    
T  48027076 aatttaagataagtagcgtgacttaaaatgcgctagtgttatttgtgagttatttgttgaatgcttaacgcaagttaacatgtgctagtgtattgtgaaa 48026977  T
Q  338 cgtgagttaactcac 352  Q
    |||||||||||||||    
T  48026976 cgtgagttaactcac 48026962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 167 - 341
Target Start/End: Original strand, 35563532 - 35563698
Alignment:
Q  167 cgctcattccgaaagtaaatgatcgaaatgcccctacgaaagttaacatgcgctacagaaaattataacgtaacttaaaataaatagcgtgacttaacac 266  Q
    |||||||||| |||||||||||  |||||||||||||| | ||||||||||||||  | |         ||||||||| |||| |||||||||||||||     
T  35563532 cgctcattcccaaagtaaatgactgaaatgcccctacgcatgttaacatgcgctagtgcat--------gtaacttaagataagtagcgtgacttaacat 35563623  T
Q  267 gcgctactgttatttgtgagttatttgttgaatacttagcgcaggttaacatgcgctagtgtattgtgcaacgtg 341  Q
    || ||| |||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  35563624 gcactagtgttatttgtgatttatttgttgaatgcttagcgcaagttaacatgcgctagtgtattgtgcaacgtg 35563698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 139 - 437
Target Start/End: Original strand, 28474791 - 28475073
Alignment:
Q  139 agaattctgctcattatccaaatggaatcgctcattccgaaagtaaatgatcgaaatgcccctacgaaagttaacatgcgctacagaaaattataacgta 238  Q
    |||||||||||||||| ||||||||| || |||||||| ||| |||||||  |||||||||||||| | |||||||||| |||| | |||||| ||||||    
T  28474791 agaattctgctcattacccaaatggattcactcattcccaaaataaatgactgaaatgcccctacgcatgttaacatgcactactgcaaattacaacgta 28474890  T
Q  239 acttaaaataaatagcgtgacttaacacgcgctactgttatttgtgagttatttgttgaat-acttagcgcaggttaacatgcgctagtgtattgtgcaa 337  Q
    |||||| |||  | || | | ||||||  |||         | ||||  ||||||| |||| |||||||| | ||||||||| |||||||||||||| ||    
T  28474891 acttaagatacgttgcataagttaacattcgc---------tggtga--tatttgtagaataacttagcgtaagttaacatgggctagtgtattgtgtaa 28474979  T
Q  338 cgtgagttaactcacattcatagcagacaacagaaactgcaataaatgcatgcaagtacagaattgtcttttgaaacatctagaatgatccataatcacg 437  Q
     |||||||||||||| ||||||||||||||||       ||||||||||| |||  ||||||| |||||||||||| || |||||||| || ||||||||    
T  28474980 tgtgagttaactcacgttcatagcagacaaca------tcaataaatgcaggcagttacagaactgtcttttgaaaaatttagaatgacccgtaatcacg 28475073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 140 - 323
Target Start/End: Original strand, 35563364 - 35563535
Alignment:
Q  140 gaattctgctcattatccaaatggaatcgctcattccgaaagtaaatgatcgaaatgcccctacgaaagttaacatgcgctacagaaaattataacgtaa 239  Q
    |||||||||||||||    |||||| ||||||||||| |||||||||||  ||||||||||| || | ||||||||||||||  | |         ||||    
T  35563364 gaattctgctcatta----aatggattcgctcattcccaaagtaaatgactgaaatgcccctgcgcatgttaacatgcgctagtgcat--------gtaa 35563451  T
Q  240 cttaaaataaatagcgtgacttaacacgcgctactgttatttgtgagttatttgttgaatacttagcgcaggttaacatgcgct 323  Q
    ||||| |||| ||||||||||||||| || ||| |||||||||||| ||||||||||||| ||||||||| |||||||||||||    
T  35563452 cttaagataagtagcgtgacttaacatgcactagtgttatttgtgatttatttgttgaatgcttagcgcaagttaacatgcgct 35563535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 140 - 221
Target Start/End: Complemental strand, 28446608 - 28446527
Alignment:
Q  140 gaattctgctcattatccaaatggaatcgctcattccgaaagtaaatgatcgaaatgcccctacgaaagttaacatgcgcta 221  Q
    ||||| ||||||||| ||||||||| ||||||||||| |||||||||||  |||||||||||||| | ||||||||||||||    
T  28446608 gaattttgctcattacccaaatggattcgctcattcccaaagtaaatgactgaaatgcccctacgcatgttaacatgcgcta 28446527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 139 - 221
Target Start/End: Complemental strand, 28476061 - 28475979
Alignment:
Q  139 agaattctgctcattatccaaatggaatcgctcattccgaaagtaaatgatcgaaatgcccctacgaaagttaacatgcgcta 221  Q
    |||||||||||||||| ||||||||   |||||||||  ||||||||||||||||||||||||||  | ||||||||||||||    
T  28476061 agaattctgctcattacccaaatggttccgctcattctcaaagtaaatgatcgaaatgcccctacacatgttaacatgcgcta 28475979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 140 - 221
Target Start/End: Original strand, 39650196 - 39650277
Alignment:
Q  140 gaattctgctcattatccaaatggaatcgctcattccgaaagtaaatgatcgaaatgcccctacgaaagttaacatgcgcta 221  Q
    ||||||||||||||| | ||||||  ||||||||||| ||||||||||  | ||||||||||||| | ||||||||||||||    
T  39650196 gaattctgctcattacctaaatggtttcgctcattcctaaagtaaatgtccaaaatgcccctacgcatgttaacatgcgcta 39650277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 140 - 217
Target Start/End: Original strand, 50065478 - 50065555
Alignment:
Q  140 gaattctgctcattatccaaatggaatcgctcattccgaaagtaaatgatcgaaatgcccctacgaaagttaacatgc 217  Q
    ||||||| ||||||| | ||||||||||||||||||| ||||||||||| ||||||||| || || | ||||||||||    
T  50065478 gaattctactcattaccaaaatggaatcgctcattcccaaagtaaatgaccgaaatgcctctgcgcatgttaacatgc 50065555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 338 - 385
Target Start/End: Original strand, 35563712 - 35563759
Alignment:
Q  338 cgtgagttaactcacattcatagcagacaacagaaactgcaataaatg 385  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||    
T  35563712 cgtgagttaactcacgttcatagcagacaacaaaaactgcaataaatg 35563759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 338 - 387
Target Start/End: Original strand, 33401627 - 33401675
Alignment:
Q  338 cgtgagttaactcacattcatagcagacaacagaaactgcaataaatgca 387  Q
    ||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  33401627 cgtgagttaactcacgttcatagcagac-acagaaactgcaataaatgca 33401675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 338 - 379
Target Start/End: Original strand, 33617874 - 33617915
Alignment:
Q  338 cgtgagttaactcacattcatagcagacaacagaaactgcaa 379  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  33617874 cgtgagttaactcacgttcatagcagacaacagaaactgcaa 33617915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 338 - 382
Target Start/End: Original strand, 33618058 - 33618102
Alignment:
Q  338 cgtgagttaactcacattcatagcagacaacagaaactgcaataa 382  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||    
T  33618058 cgtgagttaactcacgttcatagctgacaacagaaactgcaataa 33618102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 139 - 217
Target Start/End: Original strand, 45688307 - 45688385
Alignment:
Q  139 agaattctgctcattatccaaatggaatcgctcattccgaaagtaaatgatcgaaatgcccctacgaaagttaacatgc 217  Q
    ||||||| |||||||||||||||||    ||||||||| |||||||| | || ||||||||||||| | ||||||||||    
T  45688307 agaattccgctcattatccaaatggttctgctcattcccaaagtaaaagttcaaaatgcccctacgcatgttaacatgc 45688385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 140 - 201
Target Start/End: Original strand, 5602944 - 5603005
Alignment:
Q  140 gaattctgctcattatccaaatggaatcgctcattccgaaagtaaatgatcgaaatgcccct 201  Q
    ||||||||||| ||| ||||||||| | ||||||||| ||||||||||| | ||||||||||    
T  5602944 gaattctgctctttacccaaatggatttgctcattcccaaagtaaatgaccaaaatgcccct 5603005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 218
Target Start/End: Complemental strand, 49033810 - 49033731
Alignment:
Q  138 tagaattctgctcattatccaaatggaatcgctcattccgaaagtaaatgatcgaaatgcccctacgaaagttaacatgcg 218  Q
    |||||||||||||||||| |||||||   |||||||||| |||||||||| || ||||||| ||||| || ||||| ||||    
T  49033810 tagaattctgctcattattcaaatggttccgctcattcccaaagtaaatg-tccaaatgcctctacgcaatttaacttgcg 49033731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 140 - 215
Target Start/End: Complemental strand, 50069312 - 50069237
Alignment:
Q  140 gaattctgctcattatccaaatggaatcgctcattccgaaagtaaatgatcgaaatgcccctacgaaagttaacat 215  Q
    ||||||||||||||| |||||  | |||||||||||| ||||||||||  | |||||||||| || | ||||||||    
T  50069312 gaattctgctcattacccaaacagcatcgctcattcccaaagtaaatgtccaaaatgcccctgcgcatgttaacat 50069237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 185
Target Start/End: Original strand, 11821160 - 11821205
Alignment:
Q  140 gaattctgctcattatccaaatggaatcgctcattccgaaagtaaa 185  Q
    ||||||||||||||||||||||||  ||| ||||||| ||||||||    
T  11821160 gaattctgctcattatccaaatggtttcgttcattcccaaagtaaa 11821205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 101; Significance: 7e-50; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 140 - 352
Target Start/End: Original strand, 32274184 - 32274396
Alignment:
Q  140 gaattctgctcattatccaaatggaatcgctcattccgaaagtaaatgatcgaaatgcccctacgaaagttaacatgcgctacagaaaattataacgtaa 239  Q
    ||||| ||||||||  ||||||||| ||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||  | |||||| ||| |||    
T  32274184 gaattatgctcattgcccaaatggattcgctcattcccaaagtaaatgatcgaaatgcccctacgcatgttaacatgcgctagtgcaaattagaacataa 32274283  T
Q  240 cttaaaataaatagcgtgacttaacacgcgctactgttatttgtgagttatttgttgaatacttagcgcaggttaacatgcgctagtgtattgtgcaacg 339  Q
    ||||| |||  | || | | |||||| || ||| ||||| ||||| |||||||||||||||||||||| | |||||||||||| ||||||||||| ||||    
T  32274284 cttaagatatgttgcctaagttaacatgcactagtgttaattgtgtgttatttgttgaatacttagcgtatgttaacatgcgccagtgtattgtgtaacg 32274383  T
Q  340 tgagttaactcac 352  Q
    |||||||||||||    
T  32274384 tgagttaactcac 32274396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 157 - 352
Target Start/End: Original strand, 4319101 - 4319296
Alignment:
Q  157 caaatggaatcgctcattccgaaagtaaatgatcgaaatgcccctacgaaagttaacatgcgctacagaaaattataacgtaacttaaaataaatagcgt 256  Q
    |||||||| | ||||||| | ||||||||||||||||||||||||||| | |||||||||| |||  | |||||| |||||||||||| ||| || || |    
T  4319101 caaatggatttgctcattactaaagtaaatgatcgaaatgcccctacgcatgttaacatgcactagtgcaaattagaacgtaacttaagatacattgcat 4319200  T
Q  257 gacttaacacgcgctactgttatttgtgagttatttgttgaatacttagcgcaggttaacatgcgctagtgtattgtgcaacgtgagttaactcac 352  Q
     | |||||| |||||| ||||| ||||| |||||||||||||||||||| | | ||||||||| |||||||||||||  |||||||||||||||||    
T  4319201 aagttaacatgcgctagtgttaattgtgtgttatttgttgaatacttagtgtatgttaacatgtgctagtgtattgtttaacgtgagttaactcac 4319296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 139 - 352
Target Start/End: Original strand, 12703814 - 12704030
Alignment:
Q  139 agaattctgctcattatccaaatggaatcgctcattccgaaagtaaatgatcgaaatgcccctacgaaagttaacatgcgctacagaaaattataacgta 238  Q
    |||||| ||||||||||||||||||| || |||| |   ||||||||||||||||||| ||||||| |   ||||||||||||  | |||||||||||||    
T  12703814 agaattatgctcattatccaaatggattctctcaattttaaagtaaatgatcgaaatg-ccctacgtatactaacatgcgctagtgcaaattataacgta 12703912  T
Q  239 acttaaaataaatagcgtgacttaacacgcgctactgttatttgtgagttatttgttgaatacttagcg----caggttaacatgcgctagtgtattgtg 334  Q
    ||||||  ||  | |||| | ||||||| || || ||||||||||| ||||||||| ||||||||||||       |||||||||||||||| |||||||    
T  12703913 acttaagctacgttgcgtaagttaacacacgttagtgttatttgtgtgttatttgtagaatacttagcgttaattagttaacatgcgctagtatattgtg 12704012  T
Q  335 caacgtgagttaactcac 352  Q
     ||||||| |||||||||    
T  12704013 taacgtgatttaactcac 12704030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 339 - 425
Target Start/End: Original strand, 12704049 - 12704135
Alignment:
Q  339 gtgagttaactcacattcatagcagacaacagaaactgcaataaatgcatgcaagtacagaattgtcttttgaaacatctagaatga 425  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||  |||| || ||||||||||||  ||||||||||    
T  12704049 gtgagttaactcacattcatagcagacaacagaaactgcaataaatgcaggcagttacaaaactgtcttttgaaaagtctagaatga 12704135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 139 - 244
Target Start/End: Complemental strand, 17436620 - 17436515
Alignment:
Q  139 agaattctgctcattatccaaatggaatcgctcattccgaaagtaaatgatcgaaatgcccctacgaaagttaacatgcgctacagaaaattataacgta 238  Q
    |||||||||||||||| ||||||||| |||||| |||| ||||||||||| ||||||| ||||||  | ||||||||||||||  | |||||| ||||||    
T  17436620 agaattctgctcattacccaaatggattcgctcgttcccaaagtaaatgaccgaaatgtccctacacatgttaacatgcgctagtgcaaattacaacgta 17436521  T
Q  239 acttaa 244  Q
    ||||||    
T  17436520 acttaa 17436515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 338 - 437
Target Start/End: Original strand, 4319314 - 4319413
Alignment:
Q  338 cgtgagttaactcacattcatagcagacaacagaaactgcaataaatgcatgcaagtacagaattgtcttttgaaacatctagaatgatccataatcacg 437  Q
    ||||||||||||||| ||||||| ||||||| |||||||||||||||||| |||  ||||||| |||||||| |||  |||||||||| || ||||||||    
T  4319314 cgtgagttaactcaccttcatagtagacaacggaaactgcaataaatgcaggcagttacagaactgtcttttcaaaagtctagaatgacccgtaatcacg 4319413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 140 - 218
Target Start/End: Complemental strand, 31522613 - 31522535
Alignment:
Q  140 gaattctgctcattatccaaatggaatcgctcattccgaaagtaaatgatcgaaatgcccctacgaaagttaacatgcg 218  Q
    ||||||||||||||| ||||||||   |||||||||| ||||||||||| ||||||||||||||| |||||||| ||||    
T  31522613 gaattctgctcattacccaaatggttccgctcattcccaaagtaaatgaccgaaatgcccctacgcaagttaacttgcg 31522535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 140 - 222
Target Start/End: Complemental strand, 32275849 - 32275767
Alignment:
Q  140 gaattctgctcattatccaaatggaatcgctcattccgaaagtaaatgatcgaaatgcccctacgaaagttaacatgcgctac 222  Q
    ||||| ||||||||||||||||||   |||||||||| |||||||||||  |||||||||||| | |||||||||||||||||    
T  32275849 gaattatgctcattatccaaatggttccgctcattcccaaagtaaatgactgaaatgcccctatgcaagttaacatgcgctac 32275767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 338 - 387
Target Start/End: Original strand, 31483867 - 31483916
Alignment:
Q  338 cgtgagttaactcacattcatagcagacaacagaaactgcaataaatgca 387  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  31483867 cgtgagttaactcacgttcatagcagacaacagaaactgcaataaatgca 31483916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 170 - 352
Target Start/End: Original strand, 31483673 - 31483849
Alignment:
Q  170 tcattccgaaagtaaatgatcgaaatgcccctacgaaagttaacatgcgctacagaaaattataacgtaacttaaaataaata----gcgtgacttaaca 265  Q
    ||||||| ||||||||| ||| ||||||||||||| | ||||||||||||||  | |||||| |||||||||||| ||| |||    | |||||||||||    
T  31483673 tcattcctaaagtaaataatcaaaatgcccctacgcatgttaacatgcgctagtgcaaattacaacgtaacttaagatatatacattgtgtgacttaaca 31483772  T
Q  266 cgcgctactgttatttgtgagttatttgttgaat-acttagcgcaggttaacatgcgctagtgtattgtgcaacgtgagttaactcac 352  Q
     | ||||           | ||||||||| |||| |||||||| | ||||||||||||||||||| |||| |||||||||||||||||    
T  31483773 tgtgcta-----------gtgttatttgtagaataacttagcgtaagttaacatgcgctagtgtaatgtgtaacgtgagttaactcac 31483849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 135 - 221
Target Start/End: Original strand, 14153349 - 14153435
Alignment:
Q  135 tcttagaattctgctcattatccaaatggaatcgctcattccgaaagtaaatgatcgaaatgcccctacgaaagttaacatgcgcta 221  Q
    |||||||||||||||||||| |||||||   | ||||||||| ||||||||||| | |||| |||||||| | ||||||||||||||    
T  14153349 tcttagaattctgctcattacccaaatgattttgctcattcccaaagtaaatgaccaaaatacccctacgcatgttaacatgcgcta 14153435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 362 - 437
Target Start/End: Original strand, 32274714 - 32274789
Alignment:
Q  362 agacaacagaaactgcaataaatgcatgcaagtacagaattgtcttttgaaacatctagaatgatccataatcacg 437  Q
    ||||||||||||||||||||| |||| |||  ||||||| ||||||||||||  | |||||||| || ||||||||    
T  32274714 agacaacagaaactgcaataagtgcaggcagttacagaactgtcttttgaaaagtttagaatgacccgtaatcacg 32274789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 141 - 218
Target Start/End: Complemental strand, 4321815 - 4321738
Alignment:
Q  141 aattctgctcattatccaaatggaatcgctcattccgaaagtaaatgatcgaaatgcccctacgaaagttaacatgcg 218  Q
    |||||||||||||| | |||| |  |||||||||   ||||||||||||| ||||||| ||||| |||||||||||||    
T  4321815 aattctgctcattacctaaatagtttcgctcattttcaaagtaaatgatcaaaatgcctctacgcaagttaacatgcg 4321738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 140 - 187
Target Start/End: Complemental strand, 807247 - 807200
Alignment:
Q  140 gaattctgctcattatccaaatggaatcgctcattccgaaagtaaatg 187  Q
    ||||||||||| |||||||||| || ||||||||||| ||||||||||    
T  807247 gaattctgctctttatccaaatagattcgctcattcctaaagtaaatg 807200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 140 - 218
Target Start/End: Complemental strand, 35060973 - 35060895
Alignment:
Q  140 gaattctgctcattatccaaatggaatcgctcattccgaaagtaaatgatcgaaatgcccctacgaaagttaacatgcg 218  Q
    ||||||||||||||| |||||||    |||||||| | ||||||||||  | ||||||||||||| | |||||||||||    
T  35060973 gaattctgctcattacccaaatgattccgctcatttccaaagtaaatgtccaaaatgcccctacgcatgttaacatgcg 35060895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 140 - 244
Target Start/End: Original strand, 8273245 - 8273349
Alignment:
Q  140 gaattctgctcattatccaaatggaatcgctcattccgaaagtaaatgatcgaaatgcccctacgaaagttaacatgcgctacagaaaattataacgtaa 239  Q
    ||||||||||||||| ||||||||| ||||||||||| ||||||||||| ||||||||||||||| | ||||||||||| |   | |||||| |||||||    
T  8273245 gaattctgctcattacccaaatggattcgctcattcccaaagtaaatgaccgaaatgcccctacgcatgttaacatgcgtttgtgcaaattacaacgtaa 8273344  T
Q  240 cttaa 244  Q
    |||||    
T  8273345 cttaa 8273349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 387
Target Start/End: Original strand, 8273465 - 8273514
Alignment:
Q  338 cgtgagttaactcacattcatagcagacaacagaaactgcaataaatgca 387  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  8273465 cgtgagttaactcacgttcatagcacacaacagaaactgcaataaatgca 8273514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 288 - 352
Target Start/End: Original strand, 8273382 - 8273447
Alignment:
Q  288 tatttgttgaata-cttagcgcaggttaacatgcgctagtgtattgtgcaacgtgagttaactcac 352  Q
    ||||||| ||||| ||||||| | ||||||||||||||||||| |||| |||||||||||||||||    
T  8273382 tatttgtagaataacttagcgtaagttaacatgcgctagtgtaatgtgtaacgtgagttaactcac 8273447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 140 - 217
Target Start/End: Original strand, 2154262 - 2154339
Alignment:
Q  140 gaattctgctcattatccaaatggaatcgctcattccgaaagtaaatgatcgaaatgcccctacgaaagttaacatgc 217  Q
    ||||||||||||||| |||||    |||||||||||| |||||||| |||| ||||| ||||||| || |||||||||    
T  2154262 gaattctgctcattacccaaacaatatcgctcattcccaaagtaaaagatcaaaatgtccctacgcaacttaacatgc 2154339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 141 - 218
Target Start/End: Complemental strand, 12969340 - 12969264
Alignment:
Q  141 aattctgctcattatccaaatggaatcgctcattccgaaagtaaatgatcgaaatgcccctacgaaagttaacatgcg 218  Q
    |||||||||||||||| ||||||   |||||||||| |||||||| | || ||||||||||||| | |||||||||||    
T  12969340 aattctgctcattatctaaatggttccgctcattcc-aaagtaaaagttcaaaatgcccctacgcatgttaacatgcg 12969264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 221
Target Start/End: Original strand, 11712961 - 11713039
Alignment:
Q  143 ttctgctcattatccaaatggaatcgctcattccgaaagtaaatgatcgaaatgcccctacgaaagttaacatgcgcta 221  Q
    |||||||||||| | | ||||  ||||||||||| |||||||| |  | ||||||||||||| | ||||||||||||||    
T  11712961 ttctgctcattacctagatggtttcgctcattcccaaagtaaaagtccaaaatgcccctacgtatgttaacatgcgcta 11713039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 212
Target Start/End: Complemental strand, 8277439 - 8277394
Alignment:
Q  167 cgctcattccgaaagtaaatgatcgaaatgcccctacgaaagttaa 212  Q
    |||||||||| ||||||||||| |||||||||| |||| |||||||    
T  8277439 cgctcattcccaaagtaaatgaccgaaatgcccttacgcaagttaa 8277394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 221
Target Start/End: Original strand, 22727662 - 22727743
Alignment:
Q  140 gaattctgctcattatccaaatggaatcgctcattccgaaagtaaatgatcgaaatgcccctacgaaagttaacatgcgcta 221  Q
    |||| |||||| ||| |||||| || | ||| ||||| ||||||||||| | |||| ||||||||  |||||||||||||||    
T  22727662 gaatcctgctctttacccaaatagatttgcttattcccaaagtaaatgacccaaatacccctacgtgagttaacatgcgcta 22727743  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 140 - 204
Target Start/End: Complemental strand, 22788063 - 22787999
Alignment:
Q  140 gaattctgctcattatccaaatggaatcgctcattccgaaagtaaatgatcgaaatgcccctacg 204  Q
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T  22788063 gaattctgctctttacccaaatggatttgttcattcccaaagtaaatgaccaaaatacccctacg 22787999  T

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