View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3470_low_23 (Length: 433)
Name: NF3470_low_23
Description: NF3470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3470_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 69; Significance: 8e-31; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 194 - 262
Target Start/End: Complemental strand, 8918953 - 8918885
Alignment:
| Q |
194 |
gaactgattaaactttaatttaatcaatttttctgattaatacaatgtcaaaacacaagaataataatc |
262 |
Q |
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| T |
8918953 |
gaactgattaaactttaatttaatcaatttttctgattaatacaatgtcaaaacacaagaataataatc |
8918885 |
T |
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Target: chr3; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 30 - 87
Target Start/End: Complemental strand, 8919120 - 8919061
Alignment:
| Q |
30 |
ctaacatttacaaacagaatttctgagtca--tacattaggatttcaatttttgtgttaa |
87 |
Q |
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| T |
8919120 |
ctaacatttacaaacagaatttctgagtcacatacattaggatttcaatttttgtgttaa |
8919061 |
T |
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