View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3470_low_25 (Length: 420)
Name: NF3470_low_25
Description: NF3470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3470_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 77 - 408
Target Start/End: Complemental strand, 45644266 - 45643925
Alignment:
| Q |
77 |
caattgtcctttgaacatttgttaagaaatcaaatataagtagtaaaattatcttaaaatttatgtattcgcctcttaaaatagcacacaaacataagtc |
176 |
Q |
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| T |
45644266 |
caattttcctttaaacatttgttaagaaatcaaatataaatagtaaaattatcttaaaatttatgtattcgcctcttaaaatagcacacaaacataagtc |
45644167 |
T |
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| Q |
177 |
agattcttagtggaacttgaattagattctttaagcagggttttggatttgaactttgtgggtgnnnnnnntgtggtgaggactcatagaaggaaaaact |
276 |
Q |
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| T |
45644166 |
agattcttagtggaacttgaattagattctttaagcaaggttttggatttgaactttgtgggtgaaaaaaatgtggtgaggactcttagaaggaaaaact |
45644067 |
T |
|
| Q |
277 |
cctctaaaggtggcaatcctggcgaactttaagtgccccctcataaatttaaaaggcaaccacgatattagaaactttctagt----------tttgagc |
366 |
Q |
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| T |
45644066 |
cctctaaaggtggcaatcctggcgaactttaagggccccctcataaatttaaaaggcaaccacgatattagaaactttctagttttgagcttctttgagc |
45643967 |
T |
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| Q |
367 |
ttcaataaggttttaaaataggaacctatgttttgattgatg |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
45643966 |
ttcaataaggttttaaaataggaacctatgttttgattgatg |
45643925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 120
Target Start/End: Complemental strand, 45644691 - 45644649
Alignment:
| Q |
78 |
aattgtcctttgaacatttgttaagaaatcaaatataagtagt |
120 |
Q |
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||||||||||||| |||||||||||||||||| |||||||||| |
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| T |
45644691 |
aattgtcctttgagcatttgttaagaaatcaattataagtagt |
45644649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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