View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3470_low_27 (Length: 413)
Name: NF3470_low_27
Description: NF3470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3470_low_27 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 395
Target Start/End: Original strand, 6778175 - 6778569
Alignment:
| Q |
1 |
acgaggtattcgtttctgcatctgggtagctctcaaatttgagaatcttagctacgaaccttattgcttggttaaccgtatcattttccataaaaattgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6778175 |
acgaggtattcgtttctgcatctgggtagctctcaaatttgagaatcttagctacgaaccttattgcttggttaaccgtatcattttccataaaaattgg |
6778274 |
T |
|
| Q |
101 |
tattgcatttactgggaagctcttgagcttctcaagaaaaatggtgttttagtaacttcagattccgttagagctttggttagatcttattctcatatgg |
200 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6778275 |
tattccatttactgggaagctcttgagcttctcaagaaaaatggtgttttagtaacttcagattccgttagagctttggttagatcttattctcatatgg |
6778374 |
T |
|
| Q |
201 |
gttataccgaaaaagctatagaatcatttagtagaatgcgtgaatttggtattgaacctgatgctcatatgtataacacaattttgagagatgtgttgaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6778375 |
gttataccgaaaaagctatagaatcattcagtagaatgcgtgaatttggtattgaacctgatgctcatatgtataacacaattttgagagatgtgttgaa |
6778474 |
T |
|
| Q |
301 |
tgaaaagttacttgagcttgctcttgcattgtatactaccatgcttaaatccaatgttgagcctaatttttatacttataatatgttgattgatg |
395 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6778475 |
tgaaaagttacttgagcttgctcttgcattgtatactaccatgcttaaatccaatgttgagcctaatttttatacttataatatgttgattgatg |
6778569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 395
Target Start/End: Complemental strand, 17488903 - 17488509
Alignment:
| Q |
1 |
acgaggtattcgtttctgcatctgggtagctctcaaatttgagaatcttagctacgaaccttattgcttggttaaccgtatcattttccataaaaattgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
17488903 |
acgaggtattcgtttctgcatctgggtagctctcaaatttgagaatcttagctacgaaccttattgcttggttaaccgtatccttttccatagaaattgg |
17488804 |
T |
|
| Q |
101 |
tattgcatttactgggaagctcttgagcttctcaagaaaaatggtgttttagtaacttcagattccgttagagctttggttagatcttattctcatatgg |
200 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17488803 |
tattccatttactgggaagctcttgagcttctcaagaaaaatggtgttttagtaacttcagattccgttagagctttggttagatcttattctcatatgg |
17488704 |
T |
|
| Q |
201 |
gttataccgaaaaagctatagaatcatttagtagaatgcgtgaatttggtattgaacctgatgctcatatgtataacacaattttgagagatgtgttgaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17488703 |
gttataccgaaaaagctatagaatcattcagtagaatgcgtgaatttggtattgaacctgatgctcatatgtataacacaattttgagagatgtgttgaa |
17488604 |
T |
|
| Q |
301 |
tgaaaagttacttgagcttgctcttgcattgtatactaccatgcttaaatccaatgttgagcctaatttttatacttataatatgttgattgatg |
395 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17488603 |
tgaaaagttacttgagcttgctcttgcattgtatactaccatgcttaaatccaatgttgagcctaatttttatacttataatatgttgattgatg |
17488509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 395
Target Start/End: Original strand, 43095624 - 43096018
Alignment:
| Q |
1 |
acgaggtattcgtttctgcatctgggtagctctcaaatttgagaatcttagctacgaaccttattgcttggttaaccgtatcattttccataaaaattgg |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| | | |
|
|
| T |
43095624 |
acgaggtattcgtttctgcatttgggtagctctcaaatttgagaatcttagctttgaaccttattgcttggttaaccgtatccttttccataaaaactag |
43095723 |
T |
|
| Q |
101 |
tattgcatttactgggaagctcttgagcttctcaagaaaaatggtgttttagtaacttcagattccgttagagctttggttagatcttattctcatatgg |
200 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
43095724 |
tattccatttactaggaagctcttgagcttctcaagaaaaaaggtgttttagtaacttcagattccgttagagctttggttagatcttattcctatatgg |
43095823 |
T |
|
| Q |
201 |
gttataccgaaaaagctatagaatcatttagtagaatgcgtgaatttggtattgaacctgatgctcatatgtataacacaattttgagagatgtgttgaa |
300 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
43095824 |
gttataccaaaaaagctatagaatcattcgttagaatgcgcgaatttggtgttgaacctgatgctcatatgtataacacaattttgagagagatgttgaa |
43095923 |
T |
|
| Q |
301 |
tgaaaagttacttgagcttgctcttgcattgtatactaccatgcttaaatccaatgttgagcctaatttttatacttataatatgttgattgatg |
395 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43095924 |
tgaaaagttacttgagcttgctcttgcattgtatactaccatgcttaaatccaatgttgagcctaatttttatacttataatatgttgattgatg |
43096018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University