View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3470_low_3 (Length: 665)
Name: NF3470_low_3
Description: NF3470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3470_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 616; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 616; E-Value: 0
Query Start/End: Original strand, 17 - 652
Target Start/End: Original strand, 42837898 - 42838533
Alignment:
| Q |
17 |
atgaatttggaggatgctgatgctttaattaataagaaatcatttagggagatgcaaaaatatgaaactgctaaggagcttttaaaaattattcagactc |
116 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42837898 |
atgaatttggaggatgttgatgctttaattaataagaaatcatttagggagatgcaaaaatatgaaactgctaaggagcttttaaaaattattcagactc |
42837997 |
T |
|
| Q |
117 |
caagcataagggaggctgctgtagctgccaagttcaaaactaaaggtggttctcagatgagaccatattgtgacttaccaacaaaagaagattgtcgacg |
216 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
42837998 |
caagcataagggaggctgctgtagctgccaagttcaaaactaaaggtggttctcagatgagaccatattgtgacttaccaacaaaagaagactgtcgacg |
42838097 |
T |
|
| Q |
217 |
ccggactggttcctttatagcatgtaataagcttcattttagacgaatcattgctcttcatactgacattaatttgggagactgtccttttcttcgtact |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42838098 |
ccggactggttcctttatagcatgtaataagcttcattttagacgaatcattgctcttcatactgacattaatttgggagactgtccttttcttcgtact |
42838197 |
T |
|
| Q |
317 |
tgccggcacatgaacacatgtaaatatgttcattatgaggaagaccctacacctgatttgcctccaacaatgatgcgtgctcctcctcctcctctcaaac |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
42838198 |
tgccggcacatgaacacatgtaaatatgttcactatgaggaagaccctacacctgatttgcctccaacaatgatgtgtgctcctcctcctcctctcaaac |
42838297 |
T |
|
| Q |
417 |
cactaaagcagcagcgtgctgagtattgttctgaagcggaactaggccaatcacaatggatcaactgtgatatacgtaactttagaatggatatattagg |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42838298 |
cactaaagcagcagcgtgctgagtattgttctgaagcggaactaggccaaccacaatggatcaactgtgatatacgtaactttagaatggatatattagg |
42838397 |
T |
|
| Q |
517 |
taagtttggagtaataatggctgatccaccgtgggacattcacatggagctgccttatggaacaatggcggatgatgaaatgcgcactcttaatgtccct |
616 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42838398 |
taagtttggagtaataatggctgatccaccgtgggacattcacatggagctgccttatggaacaatggcggatgatgaaatgcgcactcttaatgtccct |
42838497 |
T |
|
| Q |
617 |
gctctgcaaactcatgggcttatttttctatgggtc |
652 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
42838498 |
gctctgcaaactcatgggcttatttttctatgggtc |
42838533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 253; Significance: 1e-140; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 332 - 652
Target Start/End: Complemental strand, 43913369 - 43913049
Alignment:
| Q |
332 |
acatgtaaatatgttcattatgaggaagaccctacacctgatttgcctccaacaatgatgcgtgctcctcctcctcctctcaaaccactaaagcagcagc |
431 |
Q |
| |
|
||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||| | |||||| | ||||||||| |||||||||||| ||||||| |
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| T |
43913369 |
acatgtaaatatgttcactatgagtatgaccctacacctgatttgcctccaacaatgacgggtgctcttactcctcctcccaaaccactaaaacagcagc |
43913270 |
T |
|
| Q |
432 |
gtgctgagtattgttctgaagcggaactaggccaatcacaatggatcaactgtgatatacgtaactttagaatggatatattaggtaagtttggagtaat |
531 |
Q |
| |
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||||||||||||||||||||| |||||| || || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
43913269 |
gtgctgagtattgttctgaagtggaacttggtgaaccacaatggatcaactgtgatatacgtaactttagaatggacatattaggtaagtttggagtaat |
43913170 |
T |
|
| Q |
532 |
aatggctgatccaccgtgggacattcacatggagctgccttatggaacaatggcggatgatgaaatgcgcactcttaatgtccctgctctgcaaactcat |
631 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43913169 |
aatggctgatccaccgtgggacattcacatggagcttccttatggaacaatggcggatgatgaaatgcgcactcttaatgtccctgctctgcaaactcac |
43913070 |
T |
|
| Q |
632 |
gggcttatttttctatgggtc |
652 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
43913069 |
gggcttatttttctatgggtc |
43913049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 147 - 247
Target Start/End: Complemental strand, 43913848 - 43913748
Alignment:
| Q |
147 |
agttcaaaactaaaggtggttctcagatgagaccatattgtgacttaccaacaaaagaagattgtcgacgccggactggttcctttatagcatgtaataa |
246 |
Q |
| |
|
|||||||||||||||||||||||||| ||| || |||||||||||||| ||||||||||||||||| |||| ||| ||||||||| ||||||||||||| |
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| T |
43913848 |
agttcaaaactaaaggtggttctcaggtgaaacaatattgtgacttactgacaaaagaagattgtcggcgccagaccggttcctttgtagcatgtaataa |
43913749 |
T |
|
| Q |
247 |
g |
247 |
Q |
| |
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| |
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|
| T |
43913748 |
g |
43913748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 249 - 330
Target Start/End: Complemental strand, 43913552 - 43913471
Alignment:
| Q |
249 |
ttcattttagacgaatcattgctcttcatactgacattaatttgggagactgtccttttcttcgtacttgccggcacatgaa |
330 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||| |||||||||||||||||| |
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| T |
43913552 |
ttcattttagacgaatcattgctcttcacactgacattaatctgggagactgttcttttctagatacttgccggcacatgaa |
43913471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 42 - 99
Target Start/End: Complemental strand, 43914092 - 43914035
Alignment:
| Q |
42 |
taattaataagaaatcatttagggagatgcaaaaatatgaaactgctaaggagctttt |
99 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||| |||||| |||||||||||| |
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| T |
43914092 |
taattaataagaaatcgtttagggagatgcaaaaatccaaaactggtaaggagctttt |
43914035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 89; Significance: 1e-42; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 497 - 629
Target Start/End: Original strand, 8624149 - 8624280
Alignment:
| Q |
497 |
tttagaatggatatattaggtaagtttggagtaataatggctgatccaccgtgggacattcacatggagctgccttatggaacaatggcggatgatgaaa |
596 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||| || |||||||||| |
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| T |
8624149 |
tttagaatggacgaattaggtaagtttggagtaataatggctgatccaccatgggacattcacattgagctgcc-tatggaacaattgccgatgatgaaa |
8624247 |
T |
|
| Q |
597 |
tgcgcactcttaatgtccctgctctgcaaactc |
629 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||| |
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| T |
8624248 |
tgcgcactcctaatgtccctgctgtgcaaactc |
8624280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 547 - 649
Target Start/End: Complemental strand, 8634861 - 8634760
Alignment:
| Q |
547 |
gtgggacattcacatggagctgccttatggaacaatggcggatgatgaaatgcgcactcttaatgtccctgctctgcaaactcatgggcttatttttcta |
646 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||| | ||||||||||||||| |||||||||| || ||||| ||| ||| |||||||||||||| |
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| T |
8634861 |
gtgggacattcacatggagttgccttatggaacaatgactgatgatgaaatgcgcgctcttaatgt-ccggctctataaatacattggcttatttttcta |
8634763 |
T |
|
| Q |
647 |
tgg |
649 |
Q |
| |
|
||| |
|
|
| T |
8634762 |
tgg |
8634760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 249 - 300
Target Start/End: Complemental strand, 8635122 - 8635071
Alignment:
| Q |
249 |
ttcattttagacgaatcattgctcttcatactgacattaatttgggagactg |
300 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| | ||| ||| |||||||| |
|
|
| T |
8635122 |
ttcattttagacgaatcatttctcttcatactggctttagtttaggagactg |
8635071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 147 - 247
Target Start/End: Original strand, 8623658 - 8623758
Alignment:
| Q |
147 |
agttcaaaactaaaggtggttctcagatgagaccatattgtgacttaccaacaaaagaagattgtcgacgccggactggttcctttatagcatgtaataa |
246 |
Q |
| |
|
||||||||||||||| ||| | |||| |||| | | | ||||||| || | ||||||| || |||||||||||| ||||||||| |||||||| |||| |
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| T |
8623658 |
agttcaaaactaaagatggatatcaggtgaggcaacactgtgactgactgatgaaagaagtttatcgacgccggaccggttcctttgtagcatgtgataa |
8623757 |
T |
|
| Q |
247 |
g |
247 |
Q |
| |
|
| |
|
|
| T |
8623758 |
g |
8623758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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