View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3470_low_30 (Length: 409)
Name: NF3470_low_30
Description: NF3470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3470_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 17 - 396
Target Start/End: Original strand, 19137094 - 19137473
Alignment:
| Q |
17 |
acatacaagggatattaatgcatgatcttttgctcaaatgctgttaccacgacacagctagcaactgtaataatcgacgagttcatccaatgattccggt |
116 |
Q |
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| T |
19137094 |
acatacaagggatactaatgcatgatcttttgctcaaatgctgttaccacgacacagctagcaactgtaataatcaacgagttcatccaatgattccggt |
19137193 |
T |
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| Q |
117 |
tgaggatcagtattctcaatcatccacaacatatgctcgaacaagacaacctcacaagccacgttaaccgtatcatcttcatcatttacctcggtcgaat |
216 |
Q |
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| T |
19137194 |
tgaggatcagtattctcaatcatccacaacatatgctcgaacaagacaacctcacaagccacgttaaccgtatcatcttcatcatttacctcggtcgaat |
19137293 |
T |
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| Q |
217 |
cgcgtgacctatccacaagctccttaaaaagaggatgaccaacaacttcagagttaacaaggtatcgccgccgtgtctttcccacaaacacagggcgaag |
316 |
Q |
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| T |
19137294 |
cgcgtgacctatccacaagctccttaaaaagaggatgaccaacaacttcagagttaacaaggtatcgccgccgtgtctttcccacaaacacggggcgaag |
19137393 |
T |
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| Q |
317 |
gtcttgtgtcgactcatcatcattcacaaccgctctgatactggagcggttgtgcttgttgttgttgttgtaataggtga |
396 |
Q |
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| T |
19137394 |
gtcttgtgtcgactcatcatcattcacaaccgctctgatactggagcggttgtgcttgttgttgttgttgtaataggtga |
19137473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 83 - 175
Target Start/End: Complemental strand, 51687418 - 51687326
Alignment:
| Q |
83 |
gtaataatcgacgagttcatccaatgattccggttgaggatcagtattctcaatcatccacaacatatgctcgaacaagacaacctcacaagc |
175 |
Q |
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| T |
51687418 |
gtaaaaatcgacaagttcatcaagagattcaggttgaggatcagcattttcaagcatccataacaaatgttcgaaaaggacaacctcacaagc |
51687326 |
T |
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