View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3470_low_31 (Length: 401)
Name: NF3470_low_31
Description: NF3470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3470_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 128; Significance: 5e-66; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 50 - 216
Target Start/End: Complemental strand, 30788572 - 30788409
Alignment:
| Q |
50 |
gagtcattccatccatctggttatgcttccgctcaaatgaaagttttttcatccatatatacttgcattgtcgttgtcactgcactcaacgagaaacacc |
149 |
Q |
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| T |
30788572 |
gagtcattccatccatctggttatgcttctgctcaaatgaaagttttttcatccatatatacttgcattgtcgttgccactgcactcaacgagaaacacc |
30788473 |
T |
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| Q |
150 |
acatgaccaacattgttagaaagacttttgacacaaagagtcggtcccttcgtcgaacaatcgactc |
216 |
Q |
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| T |
30788472 |
acctgaccaacattgttagaaagacttttgacac--atagtc-atcccttcgtcgaacaatcgactc |
30788409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 214 - 391
Target Start/End: Complemental strand, 30788223 - 30788046
Alignment:
| Q |
214 |
ctcacacttgctataacaatcttcttttcaaatgttagtcatttaatcgaaaaagaagtggataagaacaattgcacattattcannnnnnnnnnnnnac |
313 |
Q |
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| T |
30788223 |
ctcacacttgctataacaatcttcttttcaaatgtgagtcattcaatcgaaaaagaagtggataagaacaattgcacattactcattttttactttttac |
30788124 |
T |
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| Q |
314 |
aatttcaacacctcatctctcaaacctaacaatttcaaaataattctaaatagaatccactaatgaaatcccttcatc |
391 |
Q |
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| T |
30788123 |
aatttcaacacctcatctctcaaacctaacaatttcaaaataattctaaatagaatccactaatgaaatcccttcatc |
30788046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 214 - 383
Target Start/End: Complemental strand, 30787854 - 30787686
Alignment:
| Q |
214 |
ctcacacttgctataacaatcttcttttcaaatgttagtcatttaatcgaaaaagaagtggataagaacaattgcacattattcannnnnnnnnnnnnac |
313 |
Q |
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| T |
30787854 |
ctcacacttgctataacaatcttcttctcaaatatgagtcattcaattaaaaaggaattggataagaacaattacacattactcatttttacttttt-ac |
30787756 |
T |
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| Q |
314 |
aatttcaacacctcatctctcaaacctaacaatttcaaaataattctaaatagaatccactaatgaaatc |
383 |
Q |
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| T |
30787755 |
aatttcaacacctcacctctcaaatctaacaatttcaaaataattctaaattgactccactgatgaaatc |
30787686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 90 - 129
Target Start/End: Complemental strand, 15847556 - 15847517
Alignment:
| Q |
90 |
aagttttttcatccatatatacttgcattgtcgttgtcac |
129 |
Q |
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| T |
15847556 |
aagttttttcatccatatccacttgcattgtcgttgtcac |
15847517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 81 - 129
Target Start/End: Original strand, 17229285 - 17229333
Alignment:
| Q |
81 |
ctcaaatgaaagttttttcatccatatatacttgcattgtcgttgtcac |
129 |
Q |
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| T |
17229285 |
ctcaaatgaaagttttttcgtccacgtacacttgcactgtcgttgtcac |
17229333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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