View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3470_low_45 (Length: 344)
Name: NF3470_low_45
Description: NF3470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3470_low_45 |
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Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 20 - 330
Target Start/End: Complemental strand, 38299820 - 38299510
Alignment:
| Q |
20 |
agattcccacagatcaaaagttaaagatatcctattaggaatagtagccagctgttgtttaatattgagtttctcttcagtgtacaaatcctcaaaataa |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38299820 |
agattcccacagatcaaaagttaaagatatcctattaggaatagtagccagctgttgtttaatattgagtttctcttcagtgtacaaatcctcaaaataa |
38299721 |
T |
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| Q |
120 |
agctcgacaacgtcaggaggaggcaaaacaatatcttgacataaccactccatgatgttcttcattgagtcgtactcgcaatgacgaaaggaataatcag |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38299720 |
agctcgacaacgtcaggaggaggcaaaacaatatcttgacttaaccattccatgatgttcttcattgagtcgtactcgcaatgacgaaaggaataatcag |
38299621 |
T |
|
| Q |
220 |
atgaaaggatcatggatgcacaagtttttactaaccgtgatatcttttgctccattgtctcgttatcagagtccagtaaatctaccgcgcaatcggattc |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |
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| T |
38299620 |
atgaaaggatcatggatgcacaagtttttactaaccgtgattccttttgctccattgtctcgtcatcagagtccagtaaatctacctcgcaatcggattc |
38299521 |
T |
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| Q |
320 |
catattttctt |
330 |
Q |
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||||||||||| |
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| T |
38299520 |
catattttctt |
38299510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 21 - 110
Target Start/End: Complemental strand, 38320564 - 38320475
Alignment:
| Q |
21 |
gattcccacagatcaaaagttaaagatatcctattaggaatagtagccagctgttgtttaatattgagtttctcttcagtgtacaaatcc |
110 |
Q |
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|||||||||||||||| |||||||||||||||||||||||| ||||||| | ||||||| ||||||||| ||| |||||||||||| |
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| T |
38320564 |
gattcccacagatcaacagttaaagatatcctattaggaatggtagccaaatcctgtttaagcttgagtttcgctttcgtgtacaaatcc |
38320475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 38305739 - 38305663
Alignment:
| Q |
20 |
agattcccacagatcaaaagttaaagatatcctattaggaatagtagccagctgttgtttaatattgagtttctctt |
96 |
Q |
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||||||||||| |||||||||||||||||||||||||||||| ||||||| | |||||||| || |||||||||| |
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| T |
38305739 |
agattcccacaaatcaaaagttaaagatatcctattaggaatggtagccaattcttgtttaagcttcagtttctctt |
38305663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 108
Target Start/End: Complemental strand, 38316467 - 38316379
Alignment:
| Q |
20 |
agattcccacagatcaaaagttaaagatatcctattaggaatagtagccagctgttgtttaatattgagtttctcttcagtgtacaaat |
108 |
Q |
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||||||||||| |||||||||||||||||||||||||||||| |||||| | |||||||| || |||||||||| |||||||||| |
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| T |
38316467 |
agattcccacaaatcaaaagttaaagatatcctattaggaatgctagccaattcttgtttaagctttagtttctctttcgtgtacaaat |
38316379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 38325314 - 38325251
Alignment:
| Q |
18 |
caagattcccacagatcaaaagttaaagatatcctattaggaatagtagccagctgttgtttaa |
81 |
Q |
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| T |
38325314 |
caagattcccacaaatcaaaagttaaagataccctattaggaatggtagccaattgttgtttaa |
38325251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 107
Target Start/End: Complemental strand, 38308474 - 38308385
Alignment:
| Q |
18 |
caagattcccacagatcaaaagttaaagatatcctattaggaatagtagccagctgttgtttaatattgagtttctcttcagtgtacaaa |
107 |
Q |
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||||||||||||| ||||| |||||||||||| ||| |||||| |||||||| |||||||| | || |||||||||| ||||||||| |
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| T |
38308474 |
caagattcccacaactcaaaggttaaagatatcttataaggaatggtagccagttgttgtttgagcttatgtttctcttccgtgtacaaa |
38308385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 38313058 - 38313023
Alignment:
| Q |
20 |
agattcccacagatcaaaagttaaagatatcctatt |
55 |
Q |
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||||||||||| |||||||||||||||||||||||| |
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| T |
38313058 |
agattcccacaaatcaaaagttaaagatatcctatt |
38313023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 20 - 108
Target Start/End: Original strand, 38850878 - 38850966
Alignment:
| Q |
20 |
agattcccacagatcaaaagttaaagatatcctattaggaatagtagccagctgttgtttaatattgagtttctcttcagtgtacaaat |
108 |
Q |
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||||||||||| |||||||| ||||||||||||||||||||| |||| | |||||||||| || ||||||||| |||||||||| |
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| T |
38850878 |
agattcccacaaatcaaaagataaagatatcctattaggaatggtagttaattgttgtttaagcttaggtttctctttcgtgtacaaat |
38850966 |
T |
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