View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3470_low_46 (Length: 342)
Name: NF3470_low_46
Description: NF3470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3470_low_46 |
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| [»] scaffold1903 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 88 - 336
Target Start/End: Original strand, 3614926 - 3615174
Alignment:
| Q |
88 |
gtatccatgtatgcataagcagatttatcaaactattatgccatctccaacaaattcatcaaatgagtccctcattggtaactctttttcattccatttg |
187 |
Q |
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||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||| |
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| T |
3614926 |
gtatccatggatgcacaagcagatttatcaaactactatgccatctccaacaaattcatcaaatgagtcactcactggtaactccttttcattccatttg |
3615025 |
T |
|
| Q |
188 |
aattcaaaatcaaacccttctctttcatggcatttacttcatgaaaaaccagataaaaatgttcatgttaatctcataaaacaagaacaagatgaagttg |
287 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3615026 |
aattcaaaatcaaacccttctctttcatggcatttacttcatgaaaaaccagataaaaatgttcatgttaatctcataaaacaagaacaagatgaagttg |
3615125 |
T |
|
| Q |
288 |
ttgatggtgatggtgaagaagaaggttaaacaattgattttatgggtag |
336 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3615126 |
ttgatggtgatggtgaagaagaaggttaaacaattgattttatgggtag |
3615174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 88 - 336
Target Start/End: Complemental strand, 5568847 - 5568599
Alignment:
| Q |
88 |
gtatccatgtatgcataagcagatttatcaaactattatgccatctccaacaaattcatcaaatgagtccctcattggtaactctttttcattccatttg |
187 |
Q |
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||||||||| ||||| ||||||||||||||| ||| |||||||||||||||||| |||||||||| ||| |||| | |||||||||||||||||||||| |
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| T |
5568847 |
gtatccatggatgcacaagcagatttatcaagctactatgccatctccaacaaactcatcaaatgggtcactcactaataactctttttcattccatttg |
5568748 |
T |
|
| Q |
188 |
aattcaaaatcaaacccttctctttcatggcatttacttcatgaaaaaccagataaaaatgttcatgttaatctcataaaacaagaacaagatgaagttg |
287 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5568747 |
aattcaaaatcaaacccttctctttcatggcatttactttatgaaaaactagataaaaatgttcatgttaatctcataaaacaagaacaagatgaagttg |
5568648 |
T |
|
| Q |
288 |
ttgatggtgatggtgaagaagaaggttaaacaattgattttatgggtag |
336 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
5568647 |
ttgatggtgatggtgaagaagaaggttaaacaattgatttcatgggtag |
5568599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 88 - 335
Target Start/End: Complemental strand, 35611619 - 35611375
Alignment:
| Q |
88 |
gtatccatgtatgcataagcagatttatcaaactattatgccatctccaacaaattcatcaaatgagtccctcattggtaactctttttcattccatttg |
187 |
Q |
| |
|
||||||||| ||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||| ||| ||| || |||||||||||||||||||||| |
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| T |
35611619 |
gtatccatggatgcacaagcagatttatcaagctactatgccatctccaacaaattcatcaaatgggtcattcactgataactctttttcattccatttg |
35611520 |
T |
|
| Q |
188 |
aattcaaaatcaaacccttctctttcatggcatttacttcatgaaaaaccagataaaaatgttcatgttaatctcataaaacaagaacaagatgaagttg |
287 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
35611519 |
aattcaaaatcaaactcttctctttcatggcatttacttcatgaaaaaccagataaaaatgttcatgttaatctcataaaacaagaacaggatgaagttg |
35611420 |
T |
|
| Q |
288 |
ttgatggtgatggtgaagaagaaggttaaacaattgattttatgggta |
335 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||| ||||||| |
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|
| T |
35611419 |
ttgatggtgatggtgaa---gaaggttaaacaattgatttcatgggta |
35611375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1903 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: scaffold1903
Description:
Target: scaffold1903; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 88 - 336
Target Start/End: Complemental strand, 731 - 484
Alignment:
| Q |
88 |
gtatccatgtatgcataagcagatttatcaaactattatgccatctccaacaaattcatcaaatgagtccctcattggtaactctttttcattccatttg |
187 |
Q |
| |
|
||||||||| ||||| ||||||||||||||| ||| ||||||| ||||||||||||||||||||| ||| |||| || |||||||||||||||||||||| |
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| T |
731 |
gtatccatggatgcacaagcagatttatcaagctactatgccacctccaacaaattcatcaaatgggtcactcactgataactctttttcattccatttg |
632 |
T |
|
| Q |
188 |
aattcaaaatcaaacccttctctttcatggcatttacttcatgaaaaaccagataaaaatgttcatgttaatctcataaaacaagaacaagatgaagttg |
287 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
631 |
aattcaaaatcaaacccttctctttcatggcatttacttcatgaaaaacca-ataaaaatgttcatgttaatctcataaaacaagaacaagatgaagttg |
533 |
T |
|
| Q |
288 |
ttgatggtgatggtgaagaagaaggttaaacaattgattttatgggtag |
336 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| |||||||| |
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| T |
532 |
ttgatggtgatggtgaagaagaagattaaacaattgatttcatgggtag |
484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 181; Significance: 9e-98; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 88 - 336
Target Start/End: Complemental strand, 9981627 - 9981379
Alignment:
| Q |
88 |
gtatccatgtatgcataagcagatttatcaaactattatgccatctccaacaaattcatcaaatgagtccctcattggtaactctttttcattccatttg |
187 |
Q |
| |
|
|||| |||| ||||| ||||| ||||||||| ||| |||||||||| |||||||||||||||||| ||| |||| | |||||||||||||||||||||| |
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| T |
9981627 |
gtattcatggatgcacaagcacatttatcaagctactatgccatcttcaacaaattcatcaaatgggtcactcaccgataactctttttcattccatttg |
9981528 |
T |
|
| Q |
188 |
aattcaaaatcaaacccttctctttcatggcatttacttcatgaaaaaccagataaaaatgttcatgttaatctcataaaacaagaacaagatgaagttg |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||| |||||||||| |
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| T |
9981527 |
aattcaaaatcaaacccttctctttcatggcatttacttcatgaaaaatcacataaaaatgttcatgttaatctcataaaataagaacaggatgaagttg |
9981428 |
T |
|
| Q |
288 |
ttgatggtgatggtgaagaagaaggttaaacaattgattttatgggtag |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
9981427 |
ttgatggtgatggtgaagaagaaggttaaacaattgatttcatgggtag |
9981379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 205 - 336
Target Start/End: Original strand, 46355873 - 46355998
Alignment:
| Q |
205 |
ttctctttcatggcatttacttcatgaaaaaccagataaaaatgttcatgttaatctcataaaacaagaacaaga-tgaagttgttgatggtgatggtga |
303 |
Q |
| |
|
|||||||| ||||| ||| |||||| ||||| ||||||||||| ||||||||||||| ||||||||||| |||| | ||||||| ||||||||| |
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|
| T |
46355873 |
ttctcttttatggcgttt-cttcattaaaaatcagataaaaataatcatgttaatctcgtaaaacaagaataagattaaagttgt------tgatggtga |
46355965 |
T |
|
| Q |
304 |
agaagaaggttaaacaattgattttatgggtag |
336 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |
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| T |
46355966 |
agaagatggttaaacaattgattttatgggtag |
46355998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 210 - 336
Target Start/End: Original strand, 20855476 - 20855596
Alignment:
| Q |
210 |
tttcatggcatttacttcatgaaaaaccagataaaaatgttcatgttaatctcataaaacaagaacaaga-tgaagttgttgatggtgatggtgaagaag |
308 |
Q |
| |
|
||||||||| ||| |||||| ||||| ||||||||||| |||||||||||||||||||||| || |||| | ||||||| |||||||||||||| |
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| T |
20855476 |
tttcatggcgttt-cttcattaaaaatcagataaaaataatcatgttaatctcataaaacaaaaataagattaaagttgt------tgatggtgaagaag |
20855568 |
T |
|
| Q |
309 |
aaggttaaacaattgattttatgggtag |
336 |
Q |
| |
|
| ||||||||||||||||| ||| |||| |
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|
| T |
20855569 |
atggttaaacaattgatttcatgtgtag |
20855596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 143; Significance: 4e-75; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 125 - 336
Target Start/End: Original strand, 33130188 - 33130405
Alignment:
| Q |
125 |
atgccatctccaacaaattcatcaaatgagtccctcattggtaactctttttcattccatttgaattcaaaatcaaacccttctctttcatggcatttac |
224 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||| || ||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||| |
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|
| T |
33130188 |
atgccatctccaacaaattcatcaaatgggtcactcactgataactctttttcattccatttgaattcaaaaccaaacccttctctttcctggcgtttac |
33130287 |
T |
|
| Q |
225 |
ttcatgaaaaaccagataaaaatgttcatgttaatctcataaaacaa------gaacaagatgaagttgttgatggtgatggtgaagaagaaggttaaac |
318 |
Q |
| |
|
|||||||||||||||| || ||||||||| |||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||| |||| |
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|
| T |
33130288 |
ttcatgaaaaaccagacaacaatgttcatcttaatctcatcaaacaagaacaggaacaagatgaagttgttgatggtgttggtgaagaagaaggtgaaac |
33130387 |
T |
|
| Q |
319 |
aattgattttatgggtag |
336 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
33130388 |
aattgattttatgggtag |
33130405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 198 - 274
Target Start/End: Complemental strand, 54670973 - 54670897
Alignment:
| Q |
198 |
caaacccttctctttcatggcatttacttcatgaaaaaccagataaaaatgttcatgttaatctcataaaacaagaa |
274 |
Q |
| |
|
|||| ||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
54670973 |
caaatccttctctttcatggtgtttacttcattaaaaaccagataaaaatagtcatgttaatctcataaaacaagaa |
54670897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 119 - 336
Target Start/End: Complemental strand, 15480594 - 15480371
Alignment:
| Q |
119 |
actattatgccatctccaacaaattcatcaaatgagtccctcattggtaactctttttcattccatttgaattcaaaatcaaacccttctctttcatggc |
218 |
Q |
| |
|
||||||||| | |||| ||||||||||||||||| || ||| || ||||||||||||||||||||||||||||||| ||||||||||| ||| |||| |
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|
| T |
15480594 |
actattatgtcgtctcaaacaaattcatcaaatgggtgactcgctgataactctttttcattccatttgaattcaaaaccaaacccttctatttaatggt |
15480495 |
T |
|
| Q |
219 |
atttacttcatgaaaaaccagataaaaatgttcatgt------taatctcataaaacaagaacaagatgaagttgttgatggtgatggtgaagaagaagg |
312 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
15480494 |
gtttacttcatgaaaaaccagacaacaatgttcatgttaatgttaatatcttaaaacaagaacaagatgaagttgttgatggtgatggtgaagaggaagg |
15480395 |
T |
|
| Q |
313 |
ttaaacaattgattttatgggtag |
336 |
Q |
| |
|
| ||||||||||||| ||||||| |
|
|
| T |
15480394 |
tgaaacaattgatttcttgggtag |
15480371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 210 - 336
Target Start/End: Original strand, 14735280 - 14735400
Alignment:
| Q |
210 |
tttcatggcatttacttcatgaaaaaccagataaaaatgttcatgttaatctcataaaacaagaacaaga-tgaagttgttgatggtgatggtgaagaag |
308 |
Q |
| |
|
||||||||| ||| |||||| ||||| ||||||||||| ||||||||||||||||||||| |||| |||| | ||||||| ||||| |||||||| |
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|
| T |
14735280 |
tttcatggcgttt-cttcattaaaaatcagataaaaatattcatgttaatctcataaaaccagaataagattaaagttgt------tgatgatgaagaag |
14735372 |
T |
|
| Q |
309 |
aaggttaaacaattgattttatgggtag |
336 |
Q |
| |
|
| ||||||||||||||||| |||||||| |
|
|
| T |
14735373 |
atggttaaacaattgatttcatgggtag |
14735400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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