View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3470_low_47 (Length: 339)
Name: NF3470_low_47
Description: NF3470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3470_low_47 |
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Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 18 - 326
Target Start/End: Complemental strand, 16295252 - 16294944
Alignment:
| Q |
18 |
gttttcaacattttgcctttcaaaataaggtgaaggtcttggagttacaacatgctcaacttggatttctcttgtcattgaaactttccttctacaaagt |
117 |
Q |
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| T |
16295252 |
gttttcaacattttgcctttcaaaataaggtgaaggtcttggagttacaacatgctcaacttggatttctcttgtcattgaaactttccttctacaaagt |
16295153 |
T |
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| Q |
118 |
ggacaatttgcattgttttgaagccaaatatcaacacaatcaatgtgaaataaatggttgcaatttggtataactcttagtttctcatcttcttgaaact |
217 |
Q |
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| T |
16295152 |
ggacaatttgcattgttttgaagccaaatatcaacacaatcaatgtgaaataaatggttgcaatttggtataactcttagtttctcatcttcttgaaact |
16295053 |
T |
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| Q |
218 |
cactcaaacaaaaagcacattcactagagattcctaattcaccataatctttctctagtttgtaatgaatcaccggaattgaattaatcaccgattgttc |
317 |
Q |
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| T |
16295052 |
cactcaaacaaaaagcacattcactagagattcctaattcaccataatctttctctagtttgtaatgaatcaccggaattgaattaatcaccgattgttc |
16294953 |
T |
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| Q |
318 |
taatcctct |
326 |
Q |
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| T |
16294952 |
taatcctct |
16294944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 107 - 241
Target Start/End: Original strand, 32965243 - 32965377
Alignment:
| Q |
107 |
ttctacaaagtggacaatttgcattgttttgaagccaaatatcaacacaatcaatgtgaaataaatggttgcaatttggtataactcttagtttctcatc |
206 |
Q |
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| T |
32965243 |
ttctacaaagtggacaattagcattgttttgtaaccaaacatcaatgcaatcaatgtgaaaaacatggctacaatttggtataatcctaagtttttcatc |
32965342 |
T |
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| Q |
207 |
ttcttgaaactcactcaaacaaaaagcacattcac |
241 |
Q |
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| T |
32965343 |
ttgttgaaactcattcaaacaaacagcacattcac |
32965377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 185
Target Start/End: Complemental strand, 30811571 - 30811494
Alignment:
| Q |
108 |
tctacaaagtggacaatttgcattgttttgaagccaaatatcaacacaatcaatgtgaaataaatggttgcaatttgg |
185 |
Q |
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||||||||| |||||||| | ||| |||||||||||||||||| ||||| | |||||| ||||||||||||||| |
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| T |
30811571 |
tctacaaagaggacaattagaatttgtttgaagccaaatatcaatgcaatccaagtgaaaagcatggttgcaatttgg |
30811494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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