View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3470_low_50 (Length: 308)
Name: NF3470_low_50
Description: NF3470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3470_low_50 |
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| [»] scaffold0652 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 13 - 253
Target Start/End: Complemental strand, 6778198 - 6777958
Alignment:
| Q |
13 |
cagatgcagaaacgaatacctcgttggtcggaactaacggaagaggatgtgagagaattgttgtggttgcggcggaacccgaagaagcgaggggtttcga |
112 |
Q |
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| T |
6778198 |
cagatgcagaaacgaatacctcgttggtcggaactaacggaagaggttgtgagagaattgttgtggttgcggcggaacccgaagaagcgaggggtttcga |
6778099 |
T |
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| Q |
113 |
aagctttcttcaacattgcttctggctaggtagtgttaatcagaatcgagattcaaattcgatggaaaaactgttgaatgaagaaatagcgttatcaaca |
212 |
Q |
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| T |
6778098 |
aagctttcttcaacattgcttctggctaggtagtgttaatcagaatggagattcaaattcgatggaaaaactgttgaatgaagaaatagcgttatcaaca |
6777999 |
T |
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| Q |
213 |
tcaacataattgggaacaaagctagagtgagagtatagtct |
253 |
Q |
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| T |
6777998 |
tcaacataattgggaacaaagctagagtgagagtatagtct |
6777958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 13 - 213
Target Start/End: Original strand, 17488880 - 17489080
Alignment:
| Q |
13 |
cagatgcagaaacgaatacctcgttggtcggaactaacggaagaggatgtgagagaattgttgtggttgcggcggaacccgaagaagcgaggggtttcga |
112 |
Q |
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| T |
17488880 |
cagatgcagaaacgaatacctcgttggtcggaactaacggaagaggttgtgagagaattgttgtggttgcggcggaacccgaaaaagcgaggggttccga |
17488979 |
T |
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| Q |
113 |
aagctttcttcaacattgcttctggctaggtagtgttaatcagaatcgagattcaaattcgatggaaaaactgttgaatgaagaaatagcgttatcaaca |
212 |
Q |
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| T |
17488980 |
aagctttcttcaacattgcttctggttaggtagtgttaatcagaatcgagattcaaattcgatggaaaaactgttgaatgaagaaatagcgttatcaaca |
17489079 |
T |
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| Q |
213 |
t |
213 |
Q |
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| T |
17489080 |
t |
17489080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 16 - 181
Target Start/End: Complemental strand, 43095644 - 43095484
Alignment:
| Q |
16 |
atgcagaaacgaatacctcgttggtcggaactaacggaagaggatgtgagagaattgttgtggttgcggcggaacccgaagaagcgaggggtttcgaaag |
115 |
Q |
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| T |
43095644 |
atgcagaaacgaatacctcgttgatcggaactaacggaagaggttgtgagagaattgttgtggttgcggcggaacccgaagaagcaaggggttttgaaaa |
43095545 |
T |
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| Q |
116 |
ctttcttcaacattgcttctggctaggtagtgttaatcagaatcgagattcaaattcgatggaaaa |
181 |
Q |
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| T |
43095544 |
ctttcttcaacattgcttct-----ggtagtgttaatcagaatcgagatttaaattcgatagaaaa |
43095484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0652 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0652
Description:
Target: scaffold0652; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 206 - 253
Target Start/End: Original strand, 6469 - 6516
Alignment:
| Q |
206 |
atcaacatcaacataattgggaacaaagctagagtgagagtatagtct |
253 |
Q |
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| T |
6469 |
atcaacatcaacattactgggaacaaagcgagattgagagtatagtct |
6516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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