View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3470_low_52 (Length: 286)
Name: NF3470_low_52
Description: NF3470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3470_low_52 |
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| [»] scaffold1903 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 10 - 228
Target Start/End: Original strand, 3614546 - 3614764
Alignment:
| Q |
10 |
gcagagaaccaacccaatcttcaatttccttgcgttcaatttttcttcaatttcccttgctacattcacatattcacattcatattctttcctttacctt |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3614546 |
gcagagaaccaacccaatcttcaatttccttgcgttcaatttttcttcaatttcccttgctacattcacatattcacattcatattctttcctttacctt |
3614645 |
T |
|
| Q |
110 |
ctctttctaacgattctctttctaatatgctacaaaaatcattttcttcatccttaccttattattctcactccacccattgtttgtacttgttcttgtt |
209 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3614646 |
ctatttctaacgattctctttctaatatgctacaaaaatcatcttcttcatccttaccttattattctcactccacccattgtttgtacttgttcttgtt |
3614745 |
T |
|
| Q |
210 |
actgcagttttttaacata |
228 |
Q |
| |
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||||| ||||||||||||| |
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| T |
3614746 |
actgctgttttttaacata |
3614764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 55 - 228
Target Start/End: Complemental strand, 35611955 - 35611783
Alignment:
| Q |
55 |
ttcaatttcccttgctacattcacatattcacattcatattctttcctttaccttctctttctaacgattctctttctaatatgctacaaaaatcatttt |
154 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||| ||||||||| || |
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| T |
35611955 |
ttcaatttccct-gctacattcacatattcacattcatattctttcctctgacttctctttctaaccattctctttctaatatgctaaaaaaatcatctt |
35611857 |
T |
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| Q |
155 |
cttcatccttaccttattattctcactccacccattgtttgtacttgttcttgttactgcagttttttaacata |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||| |
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| T |
35611856 |
cttcatccttaccttattattctcactccacccattgtttgtacttgttcttgttattgctgtttttgaacata |
35611783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 11 - 228
Target Start/End: Complemental strand, 5569241 - 5569016
Alignment:
| Q |
11 |
cagagaaccaacccaatcttcaatttccttgcgttcaatttttcttcaatttcccttgctacattcacatattcacattcatattctttcctttaccttc |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
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| T |
5569241 |
cagagaaccaacccaatcttcaatttccttgcgttcaatttttcttcaatttcccta-ctacattcacatattcacattcatattctttcctctaccttc |
5569143 |
T |
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| Q |
111 |
tctttctaacgattctct------------ttctaatatgctacaaaaatcattttcttcatccttaccttattattctcactccacccattgtttgtac |
198 |
Q |
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|||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |
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| T |
5569142 |
tctttctaaccattctctttctctttctctttctaatatgctacaaaaatc---ttcttcatccttaccttattattctcactccacccattgtttatag |
5569046 |
T |
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| Q |
199 |
ttgttcttgttactgcagttttttaacata |
228 |
Q |
| |
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|| ||||||||| || |||||| |||||| |
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| T |
5569045 |
tttttcttgttattgttgtttttgaacata |
5569016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 286
Target Start/End: Original strand, 3614796 - 3614833
Alignment:
| Q |
249 |
tccattttgatgaattgggtatttttattgttgtttct |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
3614796 |
tccattttgatgaattgggtatttttattgttgtttct |
3614833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1903 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: scaffold1903
Description:
Target: scaffold1903; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 14 - 228
Target Start/End: Complemental strand, 1073 - 860
Alignment:
| Q |
14 |
agaaccaacccaatcttcaatttccttgcgttcaatttttcttcaatttcccttgctacattcacatattcacattcatattctttcctttaccttctct |
113 |
Q |
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||||||||||||||||||||||||||||| || |||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||| |
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| T |
1073 |
agaaccaacccaatcttcaatttccttgcatttaatttttcttcaatttccct-gtaacattcacatattcacattcatattctttcctctaccttctct |
975 |
T |
|
| Q |
114 |
ttctaacgattctctttctaatatgctacaaaaatcattttcttcatccttaccttattattctcactccacccattgtttgtacttgttcttgttactg |
213 |
Q |
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||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
974 |
ttctaaccattctctttctaatatgctacaaaaatcatcttcttcatccataccttattattctcactccacccattgtttgtacttgttcttgttattg |
875 |
T |
|
| Q |
214 |
cagttttttaacata |
228 |
Q |
| |
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| |||||| |||||| |
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| T |
874 |
ctgtttttgaacata |
860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 11 - 228
Target Start/End: Complemental strand, 9981990 - 9981789
Alignment:
| Q |
11 |
cagagaaccaacccaatcttcaatttccttgcgttcaatttttcttcaatttcccttgctacattcacatattcacattcatattctttcctttaccttc |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||| |||| |
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| T |
9981990 |
cagagaaccaacccaatcttcaatttccttgcgttcaaattttcttcaattt-ccatgctacattcacatattcacattcatattctttcctctacc--- |
9981895 |
T |
|
| Q |
111 |
tctttctaacgattctctttctaatatgctacaaaaatcattttcttcatccttaccttattattctcactccacccattgtttgtacttgttcttgtta |
210 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9981894 |
------------ttctctttctaatatgctacaaaaatcatcttcttcatccttaccttattattctcactccacccattgtttgtacttgttcttgtta |
9981807 |
T |
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| Q |
211 |
ctgcagttttttaacata |
228 |
Q |
| |
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|| |||||| |||||| |
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| T |
9981806 |
ttgttgtttttgaacata |
9981789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 122 - 209
Target Start/End: Complemental strand, 15480935 - 15480846
Alignment:
| Q |
122 |
attctctttctaatatgctacaaaaatcattttcttcatccttaccttattattctcactccacccattgtt--tgtacttgttcttgtt |
209 |
Q |
| |
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|||||||||||||||||| ||||| ||| | |||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||| |
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| T |
15480935 |
attctctttctaatatgcaacaaacatcttcctcttcatccttaccttatcattctcactccacccattgttcatgtccttgttcttgtt |
15480846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 129 - 193
Target Start/End: Original strand, 33129907 - 33129968
Alignment:
| Q |
129 |
ttctaatatgctacaaaaatcattttcttcatccttaccttattattctcactccacccattgtt |
193 |
Q |
| |
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||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
33129907 |
ttctaatatgctacaaacatcct---cttcatccttaccttattattctcactccacccattgtt |
33129968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 99
Target Start/End: Original strand, 33129742 - 33129785
Alignment:
| Q |
55 |
ttcaatttcccttgctacattcacatattcacattcatattcttt |
99 |
Q |
| |
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|||||||||||| |||||||||||| ||||||||||||||||||| |
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| T |
33129742 |
ttcaatttccct-gctacattcacacattcacattcatattcttt |
33129785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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