View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3470_low_53 (Length: 285)
Name: NF3470_low_53
Description: NF3470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3470_low_53 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 17 - 274
Target Start/End: Original strand, 8552284 - 8552542
Alignment:
| Q |
17 |
agagatacataaaataaagctgtatctctatctctatactatagcataagaagatattaataatatgaatcagacaatgagnnnnnnn-gaaaaccaaac |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
8552284 |
agagatacataaaataaagctgtatctctatctctatactatagcataagaagatattaataatatgaatcagacaatgagaaaaaaaagaaaaccaaac |
8552383 |
T |
|
| Q |
116 |
ttgccgtacaagttgtcagttccttaagaccacaccactgacaaaaatggcttcattggtccccacctaaatctctgtctacagtacttatttataactc |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8552384 |
ttgccgtacaagttgtcagttccttaagaccacaccactgacaaagatggcttcattggtccccacctaaatctctgtctacagtacttatttataactc |
8552483 |
T |
|
| Q |
216 |
actcacgtgctataaccatcaataaatcaaattaatactctagtcactcatttattcat |
274 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
8552484 |
actcacgtgctataaccattaataaatcaaattaatactctagtgactcatttattcat |
8552542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University