View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3470_low_54 (Length: 276)

Name: NF3470_low_54
Description: NF3470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3470_low_54
NF3470_low_54
[»] chr5 (12 HSPs)
chr5 (93-261)||(8677383-8677551)
chr5 (14-89)||(8677275-8677350)
chr5 (14-83)||(8643308-8643377)
chr5 (14-83)||(8635881-8635951)
chr5 (95-194)||(8643600-8643699)
chr5 (191-237)||(8643719-8643765)
chr5 (38-82)||(8545365-8545409)
chr5 (95-195)||(8636183-8636283)
chr5 (28-83)||(8640227-8640281)
chr5 (9-82)||(8527645-8527719)
chr5 (27-71)||(1601349-1601392)
chr5 (38-82)||(9075532-9075576)
[»] chr8 (2 HSPs)
chr8 (95-188)||(44438360-44438454)
chr8 (41-82)||(44438680-44438721)


Alignment Details
Target: chr5 (Bit Score: 145; Significance: 2e-76; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 93 - 261
Target Start/End: Original strand, 8677383 - 8677551
Alignment:
Q  93 ttcctaaaattgtagtaaggacggatcagaatattcccatcaaagtgaaaatagacgtacttttcttcatatacgggctcatcaccaaattcttcaccat 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||||||||    
T  8677383 ttcctaaaattgtagtaaggacggatcagaatattcccatcaaagtgaaaagagacgtacttttcttcatatatgggctcgtcaccaaattcttcaccat 8677482  T
Q  193 caagtcaccataagatgatgaagaacgtgtaattccaaatctcaatcaaatttgctgtgacgaggaaag 261  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |||||||    
T  8677483 caagtcaccataagatgatgaagaatgtgtaattccaaatctcaatcaaatttgttgtgacaaggaaag 8677551  T

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Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 14 - 89
Target Start/End: Original strand, 8677275 - 8677350
Alignment:
Q  14 agatgataactactgaacatctgaattaaagtttacaaaaaagacatcatttgcatccgaaaatgagataaaataa 89  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8677275 agatgataactactgaacgtcttaattaaagtttacaaaaaagacatcatttgcatccgaaaatgagataaaataa 8677350  T

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Target: chr5; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 8643308 - 8643377
Alignment:
Q  14 agatgataactactgaacatctgaattaaagtttacaaaaaagacatcatttgcatccgaaaatgagata 83  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  8643308 agatgataattactgaacatctgaattaaagtttacaaaaaagacatcatttgcatcctaaaatgagata 8643377  T

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Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 8635881 - 8635951
Alignment:
Q  14 agatgataactactgaacatctgaattaaagtttac-aaaaaagacatcatttgcatccgaaaatgagata 83  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||    
T  8635881 agatgataactactgaacatcttaattaaagtttacaaaaaaagacatcatttgcatcctaaaatgagata 8635951  T

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Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 95 - 194
Target Start/End: Original strand, 8643600 - 8643699
Alignment:
Q  95 cctaaaattgtagtaaggacggatcagaatattcccatcaaagtgaaaatagacgtacttttcttcatatacgggctcatcaccaaattcttcaccatca 194  Q
    ||||||||||||||| | | || ||||||||| | |||||| ||||||| ||||||||||||| | |||||| ||||||||| | |||||||||||||||    
T  8643600 cctaaaattgtagtatgcaagggtcagaatatcctcatcaatgtgaaaagagacgtacttttcataatatacaggctcatcatcgaattcttcaccatca 8643699  T

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Target: chr5; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 191 - 237
Target Start/End: Original strand, 8643719 - 8643765
Alignment:
Q  191 atcaagtcaccataagatgatgaagaacgtgtaattccaaatctcaa 237  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  8643719 atcaagtcaccataagatgatgaagaacgtgtaattccaaatctcaa 8643765  T

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Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 38 - 82
Target Start/End: Complemental strand, 8545409 - 8545365
Alignment:
Q  38 attaaagtttacaaaaaagacatcatttgcatccgaaaatgagat 82  Q
    |||||||||||||||||||||||||||||||||| ||||||||||    
T  8545409 attaaagtttacaaaaaagacatcatttgcatcctaaaatgagat 8545365  T

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Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 195
Target Start/End: Original strand, 8636183 - 8636283
Alignment:
Q  95 cctaaaattgtagtaaggacggatcagaatattcccatcaaagtgaaaatagacgtacttttcttcatatacgggctcatcaccaaattcttcaccatca 194  Q
    |||||||||||| |||| | || | | | ||| |||||||| ||||||| ||||| |||| |||| | ||| ||||||||| || |||||||||||||||    
T  8636183 cctaaaattgtattaagcaagggttacagtatccccatcaatgtgaaaagagacgcacttctcttaagatatgggctcatcgccgaattcttcaccatca 8636282  T
Q  195 a 195  Q
    |    
T  8636283 a 8636283  T

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Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 83
Target Start/End: Original strand, 8640227 - 8640281
Alignment:
Q  28 gaacatctgaattaaagtttacaaaaaagacatcatttgcatccgaaaatgagata 83  Q
    ||||||||||||||||| |||| ||||||||||  ||||||||| |||||||||||    
T  8640227 gaacatctgaattaaagcttac-aaaaagacattgtttgcatcctaaaatgagata 8640281  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 82
Target Start/End: Original strand, 8527645 - 8527719
Alignment:
Q  9 agcacagatgataactactgaacatctgaattaaagtttacaaaa-aagacatcatttgcatccgaaaatgagat 82  Q
    ||||||||| || | || |||||||||  |||||| ||||||||| |||||||||||||||||  ||||||||||    
T  8527645 agcacagataatgattaatgaacatctagattaaattttacaaaaaaagacatcatttgcatcttaaaatgagat 8527719  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 1601392 - 1601349
Alignment:
Q  27 tgaacatctgaattaaagtttacaaaaaagacatcatttgcatcc 71  Q
    |||||||||  ||||||||||||||||| ||||||||||||||||    
T  1601392 tgaacatctagattaaagtttacaaaaa-gacatcatttgcatcc 1601349  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 82
Target Start/End: Complemental strand, 9075576 - 9075532
Alignment:
Q  38 attaaagtttacaaaaaagacatcatttgcatccgaaaatgagat 82  Q
    ||||||||| ||||||||| |||||||||||||| |||| |||||    
T  9075576 attaaagttaacaaaaaagccatcatttgcatcctaaaacgagat 9075532  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 95 - 188
Target Start/End: Complemental strand, 44438454 - 44438360
Alignment:
Q  95 cctaaaattgtagtaaggacggatcagaatattcccatcaaagtgaaaata---gacgtacttttcttcatatacgggctcatcaccaaattcttca 188  Q
    ||||||||||||||||| | || ||| ||||  || ||||| | |||||||   |||||||||||||||||| | ||||||||| ||||||||||||    
T  44438454 cctaaaattgtagtaagcaagggtcaaaata--ccgatcaatgcgaaaatagacgacgtacttttcttcataaatgggctcatcgccaaattcttca 44438360  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 41 - 82
Target Start/End: Complemental strand, 44438721 - 44438680
Alignment:
Q  41 aaagtttacaaaaaagacatcatttgcatccgaaaatgagat 82  Q
    |||||||| |||||||||||||||||| ||| ||||||||||    
T  44438721 aaagtttagaaaaaagacatcatttgcctcctaaaatgagat 44438680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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