View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3470_low_57 (Length: 260)
Name: NF3470_low_57
Description: NF3470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3470_low_57 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 250
Target Start/End: Complemental strand, 3015175 - 3014934
Alignment:
| Q |
19 |
gttctcatccttattgttgttcatgtgagtaatgttgttcctgtacctcttaaattgatcaaatagatgatgcattttatcggagataaaaattttgaca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
3015175 |
gttctcatccttattgttgttcatgtgagtaatgttgtccttgtacctattaaattgatcaaatagatgatgcattttatcggagataaatattttgaca |
3015076 |
T |
|
| Q |
119 |
cccaatttatgtgcaagttgccaagcttcaggagtgactctggcaggaaacgccaatatagcagcatactctggtttcttttcaagcattgcac------ |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3015075 |
cccaatttatgtgcaagttgccaagcttcaggggtgactctggcaggaaacgccaatatagcagcatactctggtttcttttcaagcattgcactggctt |
3014976 |
T |
|
| Q |
213 |
----tggccttctccacatccttcttatgtataggacctatg |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3014975 |
gcactggccttctccacatccttcttatgtataggacctatg |
3014934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 48 - 250
Target Start/End: Original strand, 40671651 - 40671853
Alignment:
| Q |
48 |
taatgttgttcctgtacctcttaaattgatcaaatagatgatgcattttatcggagataaaaattttgacacccaatttatgtgcaagttgccaagcttc |
147 |
Q |
| |
|
||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| | |
|
|
| T |
40671651 |
taatgttgttcatgtaagtcttaaatcgatcaaatagatgatgcattttatcggagatgaaaattttgacacccaatttgtgtgcaagttgccaagctcc |
40671750 |
T |
|
| Q |
148 |
aggagtgactctggcaggaaacgccaatatagcagcatactctggtttcttttcaagcattgcactggccttctccacatccttcttatgtataggacct |
247 |
Q |
| |
|
||| ||||| |||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
40671751 |
aggggtgaccatggcaggaaacgccaacacaacagcatactctggtttcttttcaagcattgcactggccttctccacatccttcttatgaacaggacct |
40671850 |
T |
|
| Q |
248 |
atg |
250 |
Q |
| |
|
||| |
|
|
| T |
40671851 |
atg |
40671853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 67 - 250
Target Start/End: Complemental strand, 44607708 - 44607525
Alignment:
| Q |
67 |
cttaaattgatcaaatagatgatgcattttatcggagataaaaattttgacacccaatttatgtgcaagttgccaagcttcaggagtgactctggcagga |
166 |
Q |
| |
|
||||||||||||||||||||||| || |||||| ||||||||||| ||||||||||||| |||||||| | |||||||| |||||| || || | |
|
|
| T |
44607708 |
cttaaattgatcaaatagatgataaataatatcggcaataaaaattttcacacccaatttatctgcaagttccttagcttcagaggtgactttgacatca |
44607609 |
T |
|
| Q |
167 |
aacgccaatatagcagcatactctggtttcttttcaagcattgcactggccttctccacatccttcttatgtataggacctatg |
250 |
Q |
| |
|
||||||||||||| || ||| ||| ||||||||||||||||| ||||||||||| ||||||||||||||||| ||| |||||| |
|
|
| T |
44607608 |
aacgccaatatagtagaatattctcgtttcttttcaagcattacactggccttcatcacatccttcttatgtacagggcctatg |
44607525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 67 - 239
Target Start/End: Complemental strand, 44629214 - 44629042
Alignment:
| Q |
67 |
cttaaattgatcaaatagatgatgcattttatcggagataaaaattttgacacccaatttatgtgcaagttgccaagcttcaggagtgactctggcagga |
166 |
Q |
| |
|
||||||||||||||||||||||| || |||||| |||||||| || |||||||||| | |||||| | || ||||||||| |||||| || || | |
|
|
| T |
44629214 |
cttaaattgatcaaatagatgataaatgatatcggctataaaaatcttcacacccaattcctctgcaagatccctagcttcaggggtgactttgacatca |
44629115 |
T |
|
| Q |
167 |
aacgccaatatagcagcatactctggtttcttttcaagcattgcactggccttctccacatccttcttatgta |
239 |
Q |
| |
|
|| |||||||||| |||||| ||| |||||||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
44629114 |
aatgccaatatagtagcatattctcgtttcttttcaagcatcacactggccttcatcacatccttcttatgta |
44629042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University