View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3470_low_65 (Length: 250)
Name: NF3470_low_65
Description: NF3470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3470_low_65 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 53882393 - 53882631
Alignment:
| Q |
1 |
ctaatccctacaaccttaccaaaatatataagtttccagtacaatgcaaccataaattgtccgcataaacaaaaaatacaactataaactgattaagaat |
100 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53882393 |
ctaatccctacaactttaccaaaatatataagtttccagtacaatgcaaccataaattgtccgcataaacaaaaaatacaactataaactgattaagaat |
53882492 |
T |
|
| Q |
101 |
atataatctcaacatttgtgtactccaatgcaaagtcaatttctggaaatgctacactaatcaatttgtcatgcatctaacaatgactgaatgtcttatt |
200 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
53882493 |
atataatctcaacacttgtgtactccaatgcaaagtcaatttcgggaaatgctacactaatcaatttgtcatgcatctaacaatgacagaatgtcttatt |
53882592 |
T |
|
| Q |
201 |
caatatataaaatgctttctactcgttgtttttgtctct |
239 |
Q |
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|||||||||||||||||||||||| |||||||||||||| |
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| T |
53882593 |
caatatataaaatgctttctactcattgtttttgtctct |
53882631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 53888507 - 53888745
Alignment:
| Q |
1 |
ctaatccctacaaccttaccaaaatatataagtttccagtacaatgcaaccataaattgtccgcataaacaaaaaatacaactataaactgattaagaat |
100 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53888507 |
ctaatccctacaactttaccaaaatatataagtttccagtacaatgcaaccataaattgtccgcataaacaaaaaatacaactataaactgattaagaat |
53888606 |
T |
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| Q |
101 |
atataatctcaacatttgtgtactccaatgcaaagtcaatttctggaaatgctacactaatcaatttgtcatgcatctaacaatgactgaatgtcttatt |
200 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
53888607 |
atataatctcaacacttgtgtactccaatgcaaagtcaatttcgggaaatgctacactaatcaatttgtcatgcatctaacaatgacagaatgtcttatt |
53888706 |
T |
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| Q |
201 |
caatatataaaatgctttctactcgttgtttttgtctct |
239 |
Q |
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|||||||||||||||||||||||| |||||||||||||| |
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| T |
53888707 |
caatatataaaatgctttctactcattgtttttgtctct |
53888745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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