View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3470_low_66 (Length: 250)
Name: NF3470_low_66
Description: NF3470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3470_low_66 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 35 - 250
Target Start/End: Original strand, 8676704 - 8676919
Alignment:
| Q |
35 |
caaatcaccatgtaaccacttgaaggattccatgaaaccatttgttttctgaaaaagatctatgatgaaaaacggattgtgtgttttgtgagcaaaggat |
134 |
Q |
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| T |
8676704 |
caaatcaccatgtaaccacttgaaggattccatgaaaccatttgttttctgaaaaagatctatgatgaaaaacggattgtgtgttttgtgagtaaaggat |
8676803 |
T |
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| Q |
135 |
tgtcttctcacaaaggagagaaaattatcttctcagaggagagaaaaaattccacttccacttattaatcaagttttgcagtgataggttgcttacttgc |
234 |
Q |
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| T |
8676804 |
tgtcttctcacaaaggagagagaattatcttctcagaggagagaaaaaattccacttccacttattaataaagttttgcagtgataggttgcttacttgc |
8676903 |
T |
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| Q |
235 |
tgctatgatgctaaat |
250 |
Q |
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| T |
8676904 |
tgctatgatgctaaat |
8676919 |
T |
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