View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3470_low_7 (Length: 593)
Name: NF3470_low_7
Description: NF3470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3470_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 335 - 576
Target Start/End: Complemental strand, 31687311 - 31687070
Alignment:
| Q |
335 |
cttgtatataaacagtgtctagattgaattaataataaataaataaacagatagatgaagggatatttgcctgtatttatcacattttaattataatcta |
434 |
Q |
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| T |
31687311 |
cttgtatataaacagtgtctagattgaattaataataaataaataaacagatagatgaagggatatttgcctgtatttatcacatcttaattataatcta |
31687212 |
T |
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| Q |
435 |
tttggagttacatcctctgaagtggggagaaggtctaagggattacaactttcactttatcttacatacttgaagttattgattttatcattataatcta |
534 |
Q |
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| T |
31687211 |
tttggagtcacatcctctgaagtggggagaaggtctaagggattacaactttcactttatcttacaaacttgaagttattgattttatcattataatcta |
31687112 |
T |
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| Q |
535 |
tgctgcacttaactcttaacaagcatccctcacacagaggat |
576 |
Q |
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| T |
31687111 |
tgctgcacttaactcttaacaagcatccctcacacagaggat |
31687070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 13 - 260
Target Start/End: Complemental strand, 31688581 - 31688335
Alignment:
| Q |
13 |
gagaccatgctaaagtcgctgaactcgaggaagatctgaaggagatgataaggtggagtgatcttatagaagaaggacgaagaaaacgaatgaggaaaga |
112 |
Q |
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| T |
31688581 |
gagaccatgctaaagtcgctgaactcgaggaagatctgaaggag-tgataaggtggagcgatcttatagaagaaggacgaaaaaaacgaatgaggaaaga |
31688483 |
T |
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| Q |
113 |
gctacggaaaaagaggcttgtctcttttgtgtctgatatgtgaaacactcttgtttcttgnnnnnnnnnnnnattatggctcctgttctatagtatttga |
212 |
Q |
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| T |
31688482 |
cctacagaaaaagaggcttgtctcttttgtgtctgatatgtgaaacactcttgtttcttgtttttcttttttattatggctcctgttctatagtatttga |
31688383 |
T |
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| Q |
213 |
tataactatgcagttaactgtttgttaactatggtaacactataacaa |
260 |
Q |
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| T |
31688382 |
tataactatgcagttaactgtttgttaactatggtaacactataacaa |
31688335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 397 - 576
Target Start/End: Original strand, 32793822 - 32794001
Alignment:
| Q |
397 |
atatttgcctgtatttatcacattttaattataatctatttggagttacatcctctgaagtggggagaaggtctaagggattacaactttcactttatct |
496 |
Q |
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| T |
32793822 |
atatttgcctgtatttatcacactttaattataatctatttgaagttacatcctctgaagtggggagaaggtcaaagtgattacaactttcactttatct |
32793921 |
T |
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| Q |
497 |
tacatacttgaagttattgattttatcattataatctatgctgcacttaactcttaacaagcatccctcacacagaggat |
576 |
Q |
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| T |
32793922 |
tacatacttgaagttattgattttatcattataatcaacgctgcacttaactcttaacgagcatccctcacacagaggat |
32794001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 31691628 - 31691564
Alignment:
| Q |
13 |
gagaccatgctaaagtcgctgaactcgaggaagatctgaaggagatgataaggtggagtgatctt |
77 |
Q |
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| T |
31691628 |
gagactatgctgaagatgctgaactcgagaaagatctgaaggagatgataaggtggggcgatctt |
31691564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 335 - 381
Target Start/End: Original strand, 32793776 - 32793822
Alignment:
| Q |
335 |
cttgtatataaacagtgtctagattgaattaataataaataaataaa |
381 |
Q |
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| T |
32793776 |
cttgtatataataagtgtctagattgaagtaataataaatgaataaa |
32793822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 185 - 257
Target Start/End: Complemental strand, 27649953 - 27649883
Alignment:
| Q |
185 |
attatggctcctgttctatagtatttgatataactatgcagttaactgtttgttaactatggtaacactataa |
257 |
Q |
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||||||||| |||||||| |||||||||||||||| ||||||||||||||||| | |||||| ||||||||| |
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| T |
27649953 |
attatggctactgttcta--gtatttgatataactaagcagttaactgtttgttgattatggttacactataa |
27649883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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