View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3470_low_72 (Length: 242)
Name: NF3470_low_72
Description: NF3470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3470_low_72 |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 17 - 233
Target Start/End: Complemental strand, 9142972 - 9142756
Alignment:
| Q |
17 |
gttaggagggaaaaaaggaaccccgagatttttcatgcagtgtccgaataaaattttccacatgttatattttccacaagagtgaggtttagtatgggaa |
116 |
Q |
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| T |
9142972 |
gttaggagggaaaaaaggaaccccgagatttttcatgcagtgtccgaataaaattttccacatgttacattttccacaagagtgaggtttagtatgggaa |
9142873 |
T |
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| Q |
117 |
agcaaagttgttttccaccattggaaaagnnnnnnnggacggttagattaaagcggaatacaaattttatgatagtctgtttacactgtgtaatccatct |
216 |
Q |
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| T |
9142872 |
agcaaagttgttttccaccgttgaaaaagtttttttggacggttagattaaagcggaatacaaattttaagatagtctgtctacactgtgtaatccatct |
9142773 |
T |
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| Q |
217 |
agcattctctctgctcc |
233 |
Q |
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|||||||||||| |||| |
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| T |
9142772 |
agcattctctcttctcc |
9142756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 98 - 233
Target Start/End: Original strand, 55513596 - 55513729
Alignment:
| Q |
98 |
gtgaggtttagtatgggaaagcaaagttgttttccaccattggaaaagnnnnnnnggacggttagattaaagcggaatacaaattttatgatagtctgtt |
197 |
Q |
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| T |
55513596 |
gtgaggtttagtatgggaaagcaaagttgttatccaccat-gaaaaagtttttttaaacggttagattaaagcggaatacaaattttatgatggtctgtc |
55513694 |
T |
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| Q |
198 |
tacactgtgtaatccatctagcattctctctgctcc |
233 |
Q |
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| T |
55513695 |
tacac-gtataatccatctagcattctctctcctcc |
55513729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 143
Target Start/End: Original strand, 41261123 - 41261168
Alignment:
| Q |
98 |
gtgaggtttagtatgggaaagcaaagttgttttccaccattggaaa |
143 |
Q |
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| T |
41261123 |
gtgaggtttagcatgggaaaggaaagttgttttccaccatgggaaa |
41261168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 143
Target Start/End: Complemental strand, 35771302 - 35771261
Alignment:
| Q |
102 |
ggtttagtatgggaaagcaaagttgttttccaccattggaaa |
143 |
Q |
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| T |
35771302 |
ggtttagtatgggaaagcaaagttgtttcccaccatgggaaa |
35771261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 138
Target Start/End: Complemental strand, 9453896 - 9453856
Alignment:
| Q |
98 |
gtgaggtttagtatgggaaagcaaagttgttttccaccatt |
138 |
Q |
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| T |
9453896 |
gtgaggtttagcatgagaaaggaaagttgttttccaccatt |
9453856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 143
Target Start/End: Complemental strand, 36391718 - 36391674
Alignment:
| Q |
99 |
tgaggtttagtatgggaaagcaaagttgttttccaccattggaaa |
143 |
Q |
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| T |
36391718 |
tgaggtttagtatgggaaaggggagttgttttccaccatgggaaa |
36391674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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