View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3470_low_75 (Length: 240)

Name: NF3470_low_75
Description: NF3470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3470_low_75
NF3470_low_75
[»] chr6 (44 HSPs)
chr6 (1-224)||(26647559-26647785)
chr6 (1-224)||(26753527-26753753)
chr6 (1-222)||(28787320-28787544)
chr6 (1-222)||(28793441-28793665)
chr6 (1-224)||(26885150-26885373)
chr6 (1-222)||(26803528-26803752)
chr6 (1-225)||(27705130-27705357)
chr6 (1-224)||(26657045-26657268)
chr6 (1-224)||(26763016-26763239)
chr6 (1-222)||(27717375-27717599)
chr6 (5-224)||(27426492-27426714)
chr6 (1-224)||(27697462-27697688)
chr6 (1-224)||(27336971-27337197)
chr6 (1-224)||(27397711-27397937)
chr6 (1-222)||(26624353-26624577)
chr6 (1-222)||(26730330-26730554)
chr6 (17-186)||(26824937-26825109)
chr6 (1-218)||(27680036-27680256)
chr6 (17-224)||(27591913-27592123)
chr6 (1-164)||(27603580-27603746)
chr6 (1-222)||(27609996-27610220)
chr6 (17-224)||(27676512-27676722)
chr6 (1-222)||(31285641-31285865)
chr6 (4-224)||(26862660-26862883)
chr6 (54-222)||(27530233-27530401)
chr6 (5-97)||(26849922-26850014)
chr6 (5-97)||(26636856-26636948)
chr6 (5-97)||(26742822-26742914)
chr6 (5-97)||(26960335-26960427)
chr6 (12-96)||(27664101-27664185)
chr6 (54-224)||(25484139-25484312)
chr6 (54-224)||(26143948-26144121)
chr6 (1-222)||(25492195-25492419)
chr6 (23-160)||(27215596-27215736)
chr6 (54-181)||(25539666-25539796)
chr6 (5-96)||(26950954-26951045)
chr6 (5-112)||(28326673-28326780)
chr6 (5-112)||(28504309-28504416)
chr6 (23-97)||(25075077-25075151)
chr6 (8-97)||(26812738-26812827)
chr6 (2-75)||(28186626-28186699)
chr6 (18-75)||(28296633-28296690)
chr6 (18-75)||(28515383-28515440)
chr6 (2-54)||(28228205-28228257)
[»] chr8 (1 HSPs)
chr8 (1-222)||(29272714-29272938)
[»] scaffold0277 (2 HSPs)
scaffold0277 (1-206)||(3588-3796)
scaffold0277 (1-222)||(12551-12775)
[»] scaffold0419 (1 HSPs)
scaffold0419 (1-222)||(8569-8793)
[»] scaffold0349 (1 HSPs)
scaffold0349 (1-222)||(2415-2639)
[»] chr1 (4 HSPs)
chr1 (1-222)||(28126551-28126775)
chr1 (1-216)||(267216-267434)
chr1 (47-222)||(28163298-28163476)
chr1 (1-50)||(28132377-28132426)
[»] scaffold0003 (1 HSPs)
scaffold0003 (5-224)||(60649-60871)
[»] chr4 (7 HSPs)
chr4 (5-224)||(18074841-18075063)
chr4 (17-156)||(18722973-18723115)
chr4 (18-156)||(18678449-18678590)
chr4 (17-156)||(18654365-18654507)
chr4 (17-156)||(18688514-18688656)
chr4 (17-156)||(18698288-18698430)
chr4 (17-156)||(18730392-18730534)
[»] scaffold1870 (1 HSPs)
scaffold1870 (1-75)||(1-75)
[»] chr5 (1 HSPs)
chr5 (2-75)||(16692099-16692172)
[»] chr2 (1 HSPs)
chr2 (23-96)||(17992113-17992186)
[»] scaffold0038 (1 HSPs)
scaffold0038 (2-54)||(28703-28755)


Alignment Details
Target: chr6 (Bit Score: 116; Significance: 4e-59; HSPs: 44)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 26647785 - 26647559
Alignment:
Q  1 cttccattcttctatcctcttcccaaacaagttggaacccattatttctaaaactaagggaaggcccgaagcatatgaaactgcacgatttaaaatgcct 100  Q
    ||||||||||||||| ||||| ||| | ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||| | ||    
T  26647785 cttccattcttctatgctctttccatataagttggaacccactatttctaaaactaagggaaggcctgaagcatatgaaactgcacggtttaaaacgtct 26647686  T
Q  101 tcaaaacttgaaggaacatt--tcct-ttaaacgccatccacctcaacaattcaagagcttctgtcccatataaaccttttacttcatatggattttcta 197  Q
    ||| ||||||  || || ||  |  | ||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||| ||||||   ||||||    
T  26647685 tcataacttggcggtactttgttattcttaaacgccatccacctcaacaattcaagagcttctgtcccatatagccctcttactgcatatgttctttcta 26647586  T
Q  198 tcccatgacaggttagtaagtgtttat 224  Q
    |||||||||||||||||||||||||||    
T  26647585 tcccatgacaggttagtaagtgtttat 26647559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 26753753 - 26753527
Alignment:
Q  1 cttccattcttctatcctcttcccaaacaagttggaacccattatttctaaaactaagggaaggcccgaagcatatgaaactgcacgatttaaaatgcct 100  Q
    ||||||||||||||| ||||| ||| | ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||| | ||    
T  26753753 cttccattcttctatgctctttccatataagttggaacccactatttctaaaactaagggaaggcctgaagcatatgaaactgcacggtttaaaacgtct 26753654  T
Q  101 tcaaaacttgaaggaacatt--tcct-ttaaacgccatccacctcaacaattcaagagcttctgtcccatataaaccttttacttcatatggattttcta 197  Q
    ||| ||||||  || || ||  |  | ||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||| ||||||   ||||||    
T  26753653 tcataacttggcggtactttgttattcttaaacgccatccacctcaacaattcaagagcttctgtcccatatagccctcttactgcatatgttctttcta 26753554  T
Q  198 tcccatgacaggttagtaagtgtttat 224  Q
    |||||||||||||||||||||||||||    
T  26753553 tcccatgacaggttagtaagtgtttat 26753527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 28787544 - 28787320
Alignment:
Q  1 cttccattcttctatcctcttcccaaacaagttggaacccattatttctaaaactaagggaaggcccgaagcatatgaaactgcacgatttaaaatgcct 100  Q
    |||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||    
T  28787544 cttccattcttctatcgtctttccaaacaagttggaacccactatttctaaaactaagggaaggcccgaagcataagaaactgcacgatttaaaacgtct 28787445  T
Q  101 tcaaaacttgaaggaacatt-tcct--ttaaacgccatccacctcaacaattcaagagcttctgtcccatataaaccttttacttcatatggattttcta 197  Q
    ||| |||||||||| || || |  |  ||||| |||||||| |||||||| |||||||||||||||||||| |  ||||| ||||||| || | ||||||    
T  28787444 tcataacttgaaggtactttgttattcttaaaagccatccatctcaacaactcaagagcttctgtcccatacagccctttcacttcatgtgtactttcta 28787345  T
Q  198 tcccatgacaggttagtaagtgttt 222  Q
    |||||||||   |||||||||||||    
T  28787344 tcccatgacttcttagtaagtgttt 28787320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 28793665 - 28793441
Alignment:
Q  1 cttccattcttctatcctcttcccaaacaagttggaacccattatttctaaaactaagggaaggcccgaagcatatgaaactgcacgatttaaaatgcct 100  Q
    |||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||    
T  28793665 cttccattcttctatcgtctttccaaacaagttggaacccactatttctaaaactaagggaaggcccgaagcatacgaaactgcacgatttaaaacgtct 28793566  T
Q  101 tcaaaacttgaaggaacatt-tcct--ttaaacgccatccacctcaacaattcaagagcttctgtcccatataaaccttttacttcatatggattttcta 197  Q
    ||| |||||||||| || || |  |  ||||| |||||||| |||||||| |||||||||||||||||||| |  ||||| ||||||| || | ||||||    
T  28793565 tcataacttgaaggtactttgttattcttaaaagccatccatctcaacaactcaagagcttctgtcccatacagccctttcacttcatgtgtactttcta 28793466  T
Q  198 tcccatgacaggttagtaagtgttt 222  Q
    |||||||||   |||||||||||||    
T  28793465 tcccatgacttcttagtaagtgttt 28793441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 26885373 - 26885150
Alignment:
Q  1 cttccattcttctatcctcttcccaaacaagttggaacccattatttctaaaactaagggaaggcccgaagcatatgaaactgcacgatttaaaatgcct 100  Q
    |||||||  |||||| ||||| ||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||| ||||||||  ||    
T  26885373 cttccatgtttctatgctctttccaaacaagttggaacccactatttctataactaaaggaaggcccgaagcatatgaaactgcacggtttaaaatctct 26885274  T
Q  101 tcaaaacttgaaggaacatttcctttaaacgccatccacctcaacaattcaagagcttctgtcccatataaaccttttacttcatatggattttctatcc 200  Q
    ||| ||| | ||||||| ||  ||||||| |||| ||||||||||||||||| ||||||| |||||||||  |||| |||||||||||   | |||| ||    
T  26885273 tcataacctaaaggaactttgtctttaaaggccagccacctcaacaattcaaaagcttctttcccatatatcccttctacttcatatgttctatctaccc 26885174  T
Q  201 catgacaggttagtaagtgtttat 224  Q
     ||| || ||||||||||||||||    
T  26885173 tatggcacgttagtaagtgtttat 26885150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 26803752 - 26803528
Alignment:
Q  1 cttccattcttctatcctcttcccaaacaagttggaacccattatttctaaaactaagggaaggcccgaagcatatgaaactgcacgatttaaaatgcct 100  Q
    ||||||||||| ||| ||||| ||||||||||||||||||| ||| ||||||||||||||||| || |||||||||||||||||||||||||||||| ||    
T  26803752 cttccattcttttatgctctttccaaacaagttggaacccactatctctaaaactaagggaagacctgaagcatatgaaactgcacgatttaaaatgtct 26803653  T
Q  101 tcaaaacttgaaggaac---atttcctttaaacgccatccacctcaacaattcaagagcttctgtcccatataaaccttttacttcatatggattttcta 197  Q
    ||| |||||||||| ||    ||   |||||| |||||||||||||||||||||||||||||||||||||| || || | |||| ||||||   ||||||    
T  26803652 tcataacttgaaggtactttgttatttttaaaagccatccacctcaacaattcaagagcttctgtcccatacaacccctctactgcatatgttctttcta 26803553  T
Q  198 tcccatgacaggttagtaagtgttt 222  Q
    |  |||||| ||| ||||| |||||    
T  26803552 tatcatgactggtcagtaaatgttt 26803528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 27705130 - 27705357
Alignment:
Q  1 cttccattcttctatcctcttcccaaacaagttggaacccattatttctaaaactaagggaaggcccgaagcatatgaaactgcacgatttaaaatgcct 100  Q
    |||||||||||||||  |||| ||||||||||| |||||||||| |||||||||||| |||||||| |||||||||| ||||||||| ||||||||| ||    
T  27705130 cttccattcttctatgttcttgccaaacaagttagaacccattacttctaaaactaacggaaggccagaagcatatgcaactgcacggtttaaaatgtct 27705229  T
Q  101 tcaaaacttgaaggaacatttcc---tttaaacgccatccacctcaacaattcaagagcttctgtcccatataaaccttttacttcatatggattttcta 197  Q
    ||| ||| ||||||||| ||  |   |||||| |||||||||||||||||||||||||| ||| ||||||  || |||| ||||  |||||  |||||||    
T  27705230 tcataacctgaaggaacgttgtcatttttaaaagccatccacctcaacaattcaagagcatctatcccattcaacccttctactggatatgttttttcta 27705329  T
Q  198 tcccatgacaggttagtaagtgtttatt 225  Q
    ||| |||| ||| |||||||||||||||    
T  27705330 tcctatgagaggctagtaagtgtttatt 27705357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 26657268 - 26657045
Alignment:
Q  1 cttccattcttctatcctcttcccaaacaagttggaacccattatttctaaaactaagggaaggcccgaagcatatgaaactgcacgatttaaaatgcct 100  Q
    |||||||| ||| || ||||| ||||||||||| ||| ||| || ||||| |||||||||||| || ||||||||||||||||||||  |||||||  ||    
T  26657268 cttccatttttcgatgctctttccaaacaagtttgaagccactacttctataactaagggaagtcctgaagcatatgaaactgcacggcttaaaatttct 26657169  T
Q  101 tcaaaacttgaaggaacatttcctttaaacgccatccacctcaacaattcaagagcttctgtcccatataaaccttttacttcatatggattttctatcc 200  Q
    ||| ||| ||||||||||||  || |||| |||||||| |||||||||||||| ||||||||||||||||  ||||||||  ||||||   |||||||||    
T  26657168 tcataacctgaaggaacattgtctctaaaagccatccatctcaacaattcaagtgcttctgtcccatatagcccttttacggcatatgttatttctatcc 26657069  T
Q  201 catgacaggttagtaagtgtttat 224  Q
    | |||||| |||| ||||||||||    
T  26657068 cgtgacagtttagcaagtgtttat 26657045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 26763239 - 26763016
Alignment:
Q  1 cttccattcttctatcctcttcccaaacaagttggaacccattatttctaaaactaagggaaggcccgaagcatatgaaactgcacgatttaaaatgcct 100  Q
    |||||||| ||| || ||||| ||||||||||| ||| ||| || ||||| |||||||||||| || ||||||||||||||||||||  |||||||  ||    
T  26763239 cttccatttttcgatgctctttccaaacaagtttgaagccactacttctataactaagggaagtcctgaagcatatgaaactgcacggcttaaaatttct 26763140  T
Q  101 tcaaaacttgaaggaacatttcctttaaacgccatccacctcaacaattcaagagcttctgtcccatataaaccttttacttcatatggattttctatcc 200  Q
    ||| ||| ||||||||||||  || |||| |||||||| |||||||||||||| ||||||||||||||||  ||||||||  ||||||   |||||||||    
T  26763139 tcataacctgaaggaacattgtctctaaaagccatccatctcaacaattcaagtgcttctgtcccatatagcccttttacggcatatgttatttctatcc 26763040  T
Q  201 catgacaggttagtaagtgtttat 224  Q
    | |||||| |||| ||||||||||    
T  26763039 cgtgacagtttagcaagtgtttat 26763016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 27717375 - 27717599
Alignment:
Q  1 cttccattcttctatcctcttcccaaacaagttggaacccattatttctaaaactaagggaaggcccgaagcatatgaaactgcacgatttaaaatgcct 100  Q
    ||||||||| |||||  |||| ||| | ||||| ||||||| |||||||| |||||| |||||||| |||||||||| ||||||||| ||||||||  ||    
T  27717375 cttccattcctctatgttctttccagataagttagaacccactatttctataactaacggaaggccagaagcatatgcaactgcacggtttaaaatctct 27717474  T
Q  101 tcaaaacttgaaggaacatt---tcctttaaacgccatccacctcaacaattcaagagcttctgtcccatataaaccttttacttcatatggattttcta 197  Q
    ||  ||| ||||||||||||    | |||||| |||||||||||||||||||||||||||||||||||||| || |||| ||||||||    | ||| ||    
T  27717475 tcgtaacctgaaggaacattgtcacttttaaaagccatccacctcaacaattcaagagcttctgtcccatacaacccttctacttcatgcatacttttta 27717574  T
Q  198 tcccatgacaggttagtaagtgttt 222  Q
    |||||||||||||||||||||||||    
T  27717575 tcccatgacaggttagtaagtgttt 27717599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 5 - 224
Target Start/End: Original strand, 27426492 - 27426714
Alignment:
Q  5 cattcttctatcctcttcccaaacaagttggaacccattatttctaaaactaagggaaggcccgaagcatatgaaactgcacgatttaaaatgccttcaa 104  Q
    |||||||||||  |||| ||||||||||| ||||||| |||||||| |||||  |||||||| |||||||| | |||| ||||||| |||||   ||||     
T  27426492 cattcttctatgttctttccaaacaagttagaacccactatttctataactaccggaaggccagaagcataagcaactacacgattcaaaatcttttcat 27426591  T
Q  105 aacttgaaggaacatttcc---tttaaacgccatccacctcaacaattcaagagcttctgtcccatataaaccttttacttcatatggattttctatccc 201  Q
    ||||||||||||| ||  |   |||||| ||||||||||||||||||||||||||||||||| |||  || ||||||||| ||||||  ||||||||| |    
T  27426592 aacttgaaggaactttgtcatttttaaaagccatccacctcaacaattcaagagcttctgtcacattcaacccttttactgcatatgttttttctatctc 27426691  T
Q  202 atgacaggttagtaagtgtttat 224  Q
    |||||||| ||||||||||||||    
T  27426692 atgacaggctagtaagtgtttat 27426714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 27697462 - 27697688
Alignment:
Q  1 cttccattcttctatcctcttcccaaacaagttggaacccattatttctaaaactaagggaaggcccgaagcatatgaaactgcacgatttaaaatgcct 100  Q
    |||||||||||||||  |||| ||||||||||| ||||||| |||||||| |||||| |||||||| ||| ||||||||||||||||| |||||||  ||    
T  27697462 cttccattcttctatgttctttccaaacaagttagaacccactatttctataactaacggaaggccagaaacatatgaaactgcacgacttaaaatctct 27697561  T
Q  101 tcaaaacttgaaggaacatt---tcctttaaacgccatccacctcaacaattcaagagcttctgtcccatataaaccttttacttcatatggattttcta 197  Q
    |   | ||||| ||||||||    | |||||| |||||||||||||||||||||||||||||||||||||  || ||||||||| |||| |  |||||||    
T  27697562 ttgtaccttgatggaacattgtcacttttaaaagccatccacctcaacaattcaagagcttctgtcccattcaacccttttactgcatacgttttttcta 27697661  T
Q  198 tcccatgacaggttagtaagtgtttat 224  Q
    ||||||||  |  ||||||||||||||    
T  27697662 tcccatgatggtctagtaagtgtttat 27697688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 27336971 - 27337197
Alignment:
Q  1 cttccattcttctatcctcttcccaaacaagttggaacccattatttctaaaactaagggaaggcccgaagcatatgaaactgcacgatttaaaatgcct 100  Q
    ||||||| |||||||  |||| ||||||||||| ||||||| |||||||||||||||||||| ||||||| |||||||||||||||| |||||||   ||    
T  27336971 cttccatacttctatgttctttccaaacaagttagaacccactatttctaaaactaagggaatgcccgaaccatatgaaactgcacggtttaaaacatct 27337070  T
Q  101 tcaaaacttgaaggaacatt-tcct--ttaaacgccatccacctcaacaattcaagagcttctgtcccatataaaccttttacttcatatggattttcta 197  Q
    ||| ||||||  || || || |  |  ||||| ||| |||||||||||||||||||||||||  |||||||||  ||| ||||| ||||||   ||||||    
T  27337071 tcataacttggcggtactttgttattcttaaaagccgtccacctcaacaattcaagagcttccttcccatatagccctcttactgcatatgttctttcta 27337170  T
Q  198 tcccatgacaggttagtaagtgtttat 224  Q
    |||||||||||||||||||||||||||    
T  27337171 tcccatgacaggttagtaagtgtttat 27337197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 27397711 - 27397937
Alignment:
Q  1 cttccattcttctatcctcttcccaaacaagttggaacccattatttctaaaactaagggaaggcccgaagcatatgaaactgcacgatttaaaatgcct 100  Q
    ||||||| |||||||  |||| ||||||||||| ||||||| |||||||||||||||||||| ||||||| |||||||||||||||| |||||||   ||    
T  27397711 cttccatacttctatgttctttccaaacaagttagaacccactatttctaaaactaagggaatgcccgaaccatatgaaactgcacggtttaaaacatct 27397810  T
Q  101 tcaaaacttgaaggaacatt-tcct--ttaaacgccatccacctcaacaattcaagagcttctgtcccatataaaccttttacttcatatggattttcta 197  Q
    ||| ||||||  || || || |  |  ||||| ||| |||||||||||||||||||||||||  |||||||||  ||| ||||| ||||||   ||||||    
T  27397811 tcataacttggcggtactttgttattcttaaaagccgtccacctcaacaattcaagagcttccttcccatatagccctcttactgcatatgttctttcta 27397910  T
Q  198 tcccatgacaggttagtaagtgtttat 224  Q
    |||||||||||||||||||||||||||    
T  27397911 tcccatgacaggttagtaagtgtttat 27397937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 26624577 - 26624353
Alignment:
Q  1 cttccattcttctatcctcttcccaaacaagttggaacccattatttctaaaactaagggaaggcccgaagcatatgaaactgcacgatttaaaatgcct 100  Q
    ||||||||||||||| ||||| |||||||||||||||||||  |||||||||||||| |||||||| |||||||||| ||||||||| ||||||||| ||    
T  26624577 cttccattcttctatgctctttccaaacaagttggaacccacaatttctaaaactaacggaaggccagaagcatatgcaactgcacggtttaaaatgtct 26624478  T
Q  101 tcaaaacttgaaggaacatt---tcctttaaacgccatccacctcaacaattcaagagcttctgtcccatataaaccttttacttcatatggattttcta 197  Q
    ||| ||| ||||||||| ||    | |||||| ||||||||||||||||||||| || | ||||||||||| || |||| |||| ||| ||   ||| ||    
T  26624477 tcataacctgaaggaactttgtcacttttaaaagccatccacctcaacaattcatgaccgtctgtcccatacaacccttctactgcatgtgtgcttttta 26624378  T
Q  198 tcccatgacaggttagtaagtgttt 222  Q
    ||||||||  | |||||| ||||||    
T  26624377 tcccatgagtgcttagtaggtgttt 26624353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 26730554 - 26730330
Alignment:
Q  1 cttccattcttctatcctcttcccaaacaagttggaacccattatttctaaaactaagggaaggcccgaagcatatgaaactgcacgatttaaaatgcct 100  Q
    ||||||||||||||| ||||| |||||||||||||||||||  |||||||||||||| |||||||| |||||||||| ||||||||| ||||||||| ||    
T  26730554 cttccattcttctatgctctttccaaacaagttggaacccacaatttctaaaactaacggaaggccagaagcatatgcaactgcacggtttaaaatgtct 26730455  T
Q  101 tcaaaacttgaaggaacatt---tcctttaaacgccatccacctcaacaattcaagagcttctgtcccatataaaccttttacttcatatggattttcta 197  Q
    ||| ||| ||||||||| ||    | |||||| ||||||||||||||||||||| || | ||||||||||| || |||| |||| ||| ||   ||| ||    
T  26730454 tcataacctgaaggaactttgtcacttttaaaagccatccacctcaacaattcatgaccgtctgtcccatacaacccttctactgcatgtgtgcttttta 26730355  T
Q  198 tcccatgacaggttagtaagtgttt 222  Q
    ||||||||  | |||||| ||||||    
T  26730354 tcccatgagtgcttagtaggtgttt 26730330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 17 - 186
Target Start/End: Complemental strand, 26825109 - 26824937
Alignment:
Q  17 ctcttcccaaacaagttggaacccattatttctaaaactaagggaaggcccgaagcatatgaaactgcacgatttaaaatgccttcaaaacttgaaggaa 116  Q
    ||||| |||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||  |||| ||||||| || |    
T  26825109 ctctttccaaacaaattggaacccactatttctaatactaagggaaggcccgaagcatatgaaactgcacggtttaaaatgtgttcataacttgacggta 26825010  T
Q  117 c---atttcctttaaacgccatccacctcaacaattcaagagcttctgtcccatataaaccttttacttcata 186  Q
    |    ||   |||||| ||||||||||| |||||||||||||||||||||||||| || |||| |||||||||    
T  26825009 ctttgttatttttaaaagccatccaccttaacaattcaagagcttctgtcccatacaacccttctacttcata 26824937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 27680256 - 27680036
Alignment:
Q  1 cttccattcttctatcctcttcccaaacaagttggaacccattatttctaaaactaagggaaggcccgaagcatatgaaactgcacgatttaaaatgcct 100  Q
    |||||| |||||||| ||||| ||||||||||| ||||||| || |||||||||||| ||||||||  ||||||||| ||||||||| ||||||||| ||    
T  27680256 cttccaatcttctatgctctttccaaacaagttagaacccactacttctaaaactaacggaaggccaaaagcatatgcaactgcacggtttaaaatgtct 27680157  T
Q  101 tcaaaacttgaaggaac---atttcctttaaacgccatccacctcaacaattcaagagcttctgtcccatataaaccttttacttcatatggattttcta 197  Q
    ||  ||| |||||||||   ||  | |||||| ||||||||||||||||||||||||||||||||| |||  || |||| |||| ||| || | ||||||    
T  27680156 tcgtaacctgaaggaactttatcacttttaaaagccatccacctcaacaattcaagagcttctgtctcattcaacccttctactgcatgtgtactttcta 27680057  T
Q  198 tcccatgacaggttagtaagt 218  Q
    | ||||||| | |||||||||    
T  27680056 tgccatgactgcttagtaagt 27680036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 17 - 224
Target Start/End: Original strand, 27591913 - 27592123
Alignment:
Q  17 ctcttcccaaacaagttggaacccattatttctaaaactaagggaaggcccgaagcatatgaaactgcacgatttaaaatgccttcaaaacttgaaggaa 116  Q
    ||||| ||||||||||| ||||||| || |||||   |||| |||||||| |||||||||  ||||||||| ||||||||| ||||| ||||||||||||    
T  27591913 ctctttccaaacaagttagaacccactacttctatcgctaatggaaggccagaagcatatacaactgcacgctttaaaatgtcttcataacttgaaggaa 27592012  T
Q  117 catttcc---tttaaacgccatccacctcaacaattcaagagcttctgtcccatataaaccttttacttcatatggattttctatcccatgacaggttag 213  Q
    | ||  |   |||||| ||| |||||||||||||||||||||||||||||||||  ||  ||| |||| ||||||  ||||||||||||||||||  |||    
T  27592013 ctttctcatttttaaaagccttccacctcaacaattcaagagcttctgtcccattcaactcttctactgcatatgttttttctatcccatgacagtctag 27592112  T
Q  214 taagtgtttat 224  Q
    |||||||||||    
T  27592113 taagtgtttat 27592123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 27603580 - 27603746
Alignment:
Q  1 cttccattcttctatcctcttcccaaacaagttggaacccattatttctaaaactaagggaaggcccgaagcatatgaaactgcacgatttaaaatgcct 100  Q
    ||||||||||||||||||||| ||||||||||||||||||| || ||| |||||||||||||| || |||||||||||||||||||| ||||||| | ||    
T  27603580 cttccattcttctatcctctttccaaacaagttggaacccactacttccaaaactaagggaagtcctgaagcatatgaaactgcacggtttaaaacgtct 27603679  T
Q  101 tcaaaacttgaaggaacatt-tcct--ttaaacgccatccacctcaacaattcaagagcttctgtcc 164  Q
    ||| ||  |||||| || || |  |  ||||| ||||||||||||||||||||||||||||||||||    
T  27603680 tcataaactgaaggtactttgttattcttaaaagccatccacctcaacaattcaagagcttctgtcc 27603746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 27609996 - 27610220
Alignment:
Q  1 cttccattcttctatcctcttcccaaacaagttggaacccattatttctaaaactaagggaaggcccgaagcatatgaaactgcacgatttaaaatgcct 100  Q
    ||||||||| |||||  |||| ||||||||||| ||||||| |||||||| |||||| |||||||| |||||||||| ||| ||||| ||||||||  ||    
T  27609996 cttccattcctctatgttctttccaaacaagttagaacccactatttctataactaacggaaggccagaagcatatgcaacagcacggtttaaaatctct 27610095  T
Q  101 tcaaaacttgaaggaacatt---tcctttaaacgccatccacctcaacaattcaagagcttctgtcccatataaaccttttacttcatatggattttcta 197  Q
    ||  ||| ||||||||||||    | |||||| |||||||||||||||||||||||||||||||||||||| |  ||||  |||| ||    | ||| ||    
T  27610096 tcgtaacctgaaggaacattgtcacttttaaaagccatccacctcaacaattcaagagcttctgtcccatacagcccttccactttatgcatacttttta 27610195  T
Q  198 tcccatgacaggttagtaagtgttt 222  Q
    |||||||||||||||| ||||||||    
T  27610196 tcccatgacaggttagcaagtgttt 27610220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 17 - 224
Target Start/End: Original strand, 27676512 - 27676722
Alignment:
Q  17 ctcttcccaaacaagttggaacccattatttctaaaactaagggaaggcccgaagcatatgaaactgcacgatttaaaatgccttcaaaacttgaaggaa 116  Q
    ||||| ||||||||||| ||||||| || |||||   |||| |||||||| |||||||||  ||||||||| ||||||||| ||||| ||||||||||||    
T  27676512 ctctttccaaacaagttagaacccactacttctatcgctaatggaaggccagaagcatatacaactgcacgctttaaaatgtcttcataacttgaaggaa 27676611  T
Q  117 catttcc---tttaaacgccatccacctcaacaattcaagagcttctgtcccatataaaccttttacttcatatggattttctatcccatgacaggttag 213  Q
    | ||  |   |||||| ||| ||||||||||||||||||||||||||||| |||  ||  ||| |||| ||||||  ||||||||||||||||||  |||    
T  27676612 ctttctcatttttaaaagccttccacctcaacaattcaagagcttctgtctcattcaactcttctactgcatatgttttttctatcccatgacagtctag 27676711  T
Q  214 taagtgtttat 224  Q
    |||||||||||    
T  27676712 taagtgtttat 27676722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 31285865 - 31285641
Alignment:
Q  1 cttccattcttctatcctcttcccaaacaagttggaacccattatttctaaaactaagggaaggcccgaagcatatgaaactgcacgatttaaaatgcct 100  Q
    |||||||| |||||| ||||| ||||||||||| ||||||| || ||||| |||||| |||||||| |||| ||||| ||||||||| ||||||||| ||    
T  31285865 cttccatttttctatgctctttccaaacaagtttgaacccactacttctataactaatggaaggccagaagaatatgcaactgcacggtttaaaatgtct 31285766  T
Q  101 tcaaaacttgaaggaacatt---tcctttaaacgccatccacctcaacaattcaagagcttctgtcccatataaaccttttacttcatatggattttcta 197  Q
    ||  ||| ||||||||| ||    | |||||| ||||||||||| ||||||||||||||||| |||||||  || |||| |||| ||| || | ||| ||    
T  31285765 tcgtaacctgaaggaactttgtcacttttaaaagccatccaccttaacaattcaagagcttcagtcccattcaacccttctactgcatgtgtacttttta 31285666  T
Q  198 tcccatgacaggttagtaagtgttt 222  Q
    |||||||||   |||||||||||||    
T  31285665 tcccatgactacttagtaagtgttt 31285641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 4 - 224
Target Start/End: Complemental strand, 26862883 - 26862660
Alignment:
Q  4 ccattcttctatcctcttcccaaacaagttggaacccattatttctaaaactaagggaaggcccgaagcatatgaaactgcacgatttaaaatgccttca 103  Q
    ||||||||| || ||||| ||||||||||| ||||||| |||||| | |||||| |||||||| |||||||||| ||||||||| |||||||   | | |    
T  26862883 ccattcttccatgctctttccaaacaagttagaacccactatttcgagaactaacggaaggccggaagcatatgcaactgcacggtttaaaacatcgtta 26862784  T
Q  104 aaacttgaaggaacatttcc---tttaaacgccatccacctcaacaattcaagagcttctgtcccatataaaccttttacttcatatggattttctatcc 200  Q
     |||| |||||||| |  ||   |||||| |||||||||||||||||||||| |||||||||| ||| ||  || |||||  ||||||   |||||||||    
T  26862783 taactcgaaggaacttcaccatttttaaaagccatccacctcaacaattcaaaagcttctgtctcatgtagcccgtttaccgcatatgttctttctatcc 26862684  T
Q  201 catgacaggttagtaagtgtttat 224  Q
    |||| || ||||||||||||||||    
T  26862683 catggcatgttagtaagtgtttat 26862660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 54 - 222
Target Start/End: Original strand, 27530233 - 27530401
Alignment:
Q  54 ctaagggaaggcccgaagcatatgaaactgcacgatttaaaatgccttcaaaacttgaaggaacatttcctttaaacgccatccacctcaacaattcaag 153  Q
    |||| |||||||| |||||||| | || |||||| ||||||||| |||||  |||||||||||||||| |||| || |||||||||||||||||||| ||    
T  27530233 ctaatggaaggccagaagcataagtaagtgcacggtttaaaatgtcttcatgacttgaaggaacattttctttgaaagccatccacctcaacaattcgag 27530332  T
Q  154 agcttctgtcccatataaaccttttacttcatatggattttctatcccatgacaggttagtaagtgttt 222  Q
    |||||||||| |||  || |||| |||| ||| || | ||||||||||||||    |||||||||||||    
T  27530333 agcttctgtcgcattcaacccttctactgcatgtgtactttctatcccatgaatctttagtaagtgttt 27530401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 5 - 97
Target Start/End: Complemental strand, 26850014 - 26849922
Alignment:
Q  5 cattcttctatcctcttcccaaacaagttggaacccattatttctaaaactaagggaaggcccgaagcatatgaaactgcacgatttaaaatg 97  Q
    ||||||||||| ||||| ||||||||||||||||||| || ||||||| |||| |||||||| |||||||||  |||||||||||||||||||    
T  26850014 cattcttctatactctttccaaacaagttggaacccactacttctaaagctaatggaaggccagaagcatatttaactgcacgatttaaaatg 26849922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 97
Target Start/End: Complemental strand, 26636948 - 26636856
Alignment:
Q  5 cattcttctatcctcttcccaaacaagttggaacccattatttctaaaactaagggaaggcccgaagcatatgaaactgcacgatttaaaatg 97  Q
    |||||| |||| ||||| ||||||||||||||||||| || ||||||| |||| |||||||| |||||||||  ||||||||| |||||||||    
T  26636948 cattctgctatactctttccaaacaagttggaacccactacttctaaagctaatggaaggccagaagcatatttaactgcacggtttaaaatg 26636856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 97
Target Start/End: Complemental strand, 26742914 - 26742822
Alignment:
Q  5 cattcttctatcctcttcccaaacaagttggaacccattatttctaaaactaagggaaggcccgaagcatatgaaactgcacgatttaaaatg 97  Q
    |||||| |||| ||||| ||||||||||||||||||| || ||||||| |||| |||||||| |||||||||  ||||||||| |||||||||    
T  26742914 cattctgctatactctttccaaacaagttggaacccactacttctaaagctaatggaaggccagaagcatatttaactgcacggtttaaaatg 26742822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 97
Target Start/End: Complemental strand, 26960427 - 26960335
Alignment:
Q  5 cattcttctatcctcttcccaaacaagttggaacccattatttctaaaactaagggaaggcccgaagcatatgaaactgcacgatttaaaatg 97  Q
    |||||| |||| ||||| ||||||||||||||||||| || ||||||| |||| |||||||| |||||||||  ||||||||| |||||||||    
T  26960427 cattctgctatactcttgccaaacaagttggaacccactacttctaaagctaatggaaggccagaagcatatttaactgcacggtttaaaatg 26960335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 96
Target Start/End: Original strand, 27664101 - 27664185
Alignment:
Q  12 ctatcctcttcccaaacaagttggaacccattatttctaaaactaagggaaggcccgaagcatatgaaactgcacgatttaaaat 96  Q
    |||| ||||| ||||||||||||||||||| || || |||| |||| |||||||| |||||||||  ||||||||| ||||||||    
T  27664101 ctatactctttccaaacaagttggaacccactacttttaaagctaatggaaggccagaagcatattcaactgcacggtttaaaat 27664185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 54 - 224
Target Start/End: Complemental strand, 25484312 - 25484139
Alignment:
Q  54 ctaagggaaggcccgaagcatatgaaactgcacgatttaaaatgccttcaaaacttgaaggaacatttcc---tttaaacgccatccacctcaacaattc 150  Q
    ||||||| ||||| || ||||| | |||| |||| ||||||||  ||||| ||||||||||||| ||  |   |||||| ||||| | ||||||||||||    
T  25484312 ctaagggcaggccagatgcataagtaactacacggtttaaaatctcttcataacttgaaggaactttgtcatttttaaaagccattcgcctcaacaattc 25484213  T
Q  151 aagagcttctgtcccatataaaccttttacttcatatggattttctatcccatgacaggttagtaagtgtttat 224  Q
    ||||||||||||| |||  ||  ||| |||| ||| || | ||   ||||||||||||| ||||||||||||||    
T  25484212 aagagcttctgtctcattcaattcttctactgcatgtgtacttgtaatcccatgacaggctagtaagtgtttat 25484139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 54 - 224
Target Start/End: Complemental strand, 26144121 - 26143948
Alignment:
Q  54 ctaagggaaggcccgaagcatatgaaactgcacgatttaaaatgccttcaaaacttgaaggaacatttcc---tttaaacgccatccacctcaacaattc 150  Q
    ||||||| ||||| || ||||| | |||| |||| ||||||||  ||||| ||||||||||||| ||  |   |||||| ||||| | ||||||||||||    
T  26144121 ctaagggcaggccagatgcataagtaactacacggtttaaaatttcttcataacttgaaggaactttgtcatttttaaaagccattcgcctcaacaattc 26144022  T
Q  151 aagagcttctgtcccatataaaccttttacttcatatggattttctatcccatgacaggttagtaagtgtttat 224  Q
    ||||||||||||| |||  ||  ||| |||| ||| || | ||   ||||||||||||| ||||||||||||||    
T  26144021 aagagcttctgtctcattcaattcttctactgcatgtgtacttgtaatcccatgacaggctagtaagtgtttat 26143948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 25492195 - 25492419
Alignment:
Q  1 cttccattcttctatcctcttcccaaacaagttggaacccattatttctaaaactaagggaaggcccgaagcatatgaaactgcacgatttaaaatgcct 100  Q
    ||||||||||||||| || || |||||||| || || || |||||| ||||| |||| |||||||| |||||||| | || |||| |  |||||||| ||    
T  25492195 cttccattcttctatgctatttccaaacaaatttgaccctattattactaaagctaatggaaggccagaagcataggtaattgcaagtgttaaaatgtct 25492294  T
Q  101 tcaaaacttgaaggaacatttcc---tttaaacgccatccacctcaacaattcaagagcttctgtcccatataaaccttttacttcatatggattttcta 197  Q
    ||| || ||||||||||  |  |   |||||| ||||||||| | | ||||||||||||||||  |||||  ||  ||| |||| |||    | ||||||    
T  25492295 tcataaattgaaggaactctgtcatttttaaaagccatccacataagcaattcaagagcttcttccccatgcaactcttctactgcatgcatactttcta 25492394  T
Q  198 tcccatgacaggttagtaagtgttt 222  Q
    ||||||||| |||||||| ||||||    
T  25492395 tcccatgactggttagtatgtgttt 25492419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 23 - 160
Target Start/End: Complemental strand, 27215736 - 27215596
Alignment:
Q  23 ccaaacaagttggaacccattatttctaaaactaagggaaggcccgaagcatatgaaactgcacgatttaaaatgccttcaaaacttgaaggaacatttc 122  Q
    |||||||| ||||| || ||| || ||| | |||| |||||||| ||| |||| | || ||||||||| |||||||||||| ||||||||||||| |  |    
T  27215736 ccaaacaaattggaccctattgttactatagctaatggaaggccagaaacataagtaagtgcacgattaaaaatgccttcataacttgaaggaacttcac 27215637  T
Q  123 c---tttaaacgccatccacctcaacaattcaagagcttct 160  Q
    |   |||||| |||||| |||||||||||| | ||||||||    
T  27215636 catttttaaatgccatcaacctcaacaatttatgagcttct 27215596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 54 - 181
Target Start/End: Complemental strand, 25539796 - 25539666
Alignment:
Q  54 ctaagggaaggcccgaagcatatgaaactgcacgatttaaaatgccttcaaaacttgaaggaacatttcc---tttaaacgccatccacctcaacaattc 150  Q
    ||||||| ||||| || ||||| | |||| |||| ||||||||  ||||| |||| |||||||| ||  |   |||||||||||| | ||||||||||||    
T  25539796 ctaagggtaggccagatgcataagtaactacacggtttaaaatctcttcataactcgaaggaactttgtcatttttaaacgccattcgcctcaacaattc 25539697  T
Q  151 aagagcttctgtcccatataaaccttttact 181  Q
    ||||||||||||| |||  || |||||||||    
T  25539696 aagagcttctgtctcattcaacccttttact 25539666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 96
Target Start/End: Complemental strand, 26951045 - 26950954
Alignment:
Q  5 cattcttctatcctcttcccaaacaagttggaacccattatttctaaaactaagggaaggcccgaagcatatgaaactgcacgatttaaaat 96  Q
    |||||| ||||  |||| ||||||||||| ||||||| || ||||||| |||| |||||||| | |||||||  ||||||||| ||||||||    
T  26951045 cattctgctatagtctttccaaacaagttagaacccactacttctaaagctaatggaaggccagcagcatatttaactgcacggtttaaaat 26950954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 112
Target Start/End: Complemental strand, 28326780 - 28326673
Alignment:
Q  5 cattcttctatcctcttcccaaacaagttggaacccattatttctaaaactaagggaaggcccgaagcatatgaaactgcacgatttaaaatgccttcaa 104  Q
    |||||| ||||  |||| ||||||||||||||||||| || ||||||| | || |||||||| |||||||| |  |||||||  | ||||||||| ||||    
T  28326780 cattctactatattctttccaaacaagttggaacccactacttctaaagccaatggaaggccagaagcataagttactgcacagtataaaatgccgtcaa 28326681  T
Q  105 aacttgaa 112  Q
    || |||||    
T  28326680 aatttgaa 28326673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 112
Target Start/End: Complemental strand, 28504416 - 28504309
Alignment:
Q  5 cattcttctatcctcttcccaaacaagttggaacccattatttctaaaactaagggaaggcccgaagcatatgaaactgcacgatttaaaatgccttcaa 104  Q
    |||||| ||||  |||| ||||||||||||||||||| || ||||||| | || |||||||| |||||||| |  |||||||  | ||||||||| ||||    
T  28504416 cattctactatattctttccaaacaagttggaacccactacttctaaagccaatggaaggccagaagcataagttactgcacagtataaaatgccgtcaa 28504317  T
Q  105 aacttgaa 112  Q
    || |||||    
T  28504316 aatttgaa 28504309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 23 - 97
Target Start/End: Complemental strand, 25075151 - 25075077
Alignment:
Q  23 ccaaacaagttggaacccattatttctaaaactaagggaaggcccgaagcatatgaaactgcacgatttaaaatg 97  Q
    |||||||||||||||||||  | ||||||| |||| |||||||| |||||||||  || |||||| |||||||||    
T  25075151 ccaaacaagttggaacccacaacttctaaagctaatggaaggccagaagcatatttaattgcacggtttaaaatg 25075077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 97
Target Start/End: Complemental strand, 26812827 - 26812738
Alignment:
Q  8 tcttctatcctcttcccaaacaagttggaacccattatttctaaaactaagggaaggcccgaagcatatgaaactgcacgatttaaaatg 97  Q
    ||||| || ||||| ||||||||||||||||||| || ||||| | |||| |||||||| |||| ||||   ||||| ||||||||||||    
T  26812827 tcttcaatactctttccaaacaagttggaacccactacttctatagctaatggaaggccagaagtatattttactgcgcgatttaaaatg 26812738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 75
Target Start/End: Complemental strand, 28186699 - 28186626
Alignment:
Q  2 ttccattcttctatcctcttcccaaacaagttggaacccattatttctaaaactaagggaaggcccgaagcata 75  Q
    ||||||||| ||||  |||| ||||||||||||||||||| || ||||||| | || |||||||| ||||||||    
T  28186699 ttccattctcctatattctttccaaacaagttggaacccactacttctaaagccaatggaaggccagaagcata 28186626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 28296633 - 28296690
Alignment:
Q  18 tcttcccaaacaagttggaacccattatttctaaaactaagggaaggcccgaagcata 75  Q
    |||| ||||||||||||||||||| || ||||||| | || |||||||| ||||||||    
T  28296633 tctttccaaacaagttggaacccactacttctaaagccaatggaaggccagaagcata 28296690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 28515440 - 28515383
Alignment:
Q  18 tcttcccaaacaagttggaacccattatttctaaaactaagggaaggcccgaagcata 75  Q
    |||| ||||||||||||||||||| || ||||||| | || |||||||| ||||||||    
T  28515440 tctttccaaacaagttggaacccactacttctaaagccaatggaaggccagaagcata 28515383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 28228257 - 28228205
Alignment:
Q  2 ttccattcttctatcctcttcccaaacaagttggaacccattatttctaaaac 54  Q
    ||||||||||| ||  |||||||||||||||| ||||||| || |||||||||    
T  28228257 ttccattcttcaatattcttcccaaacaagtttgaacccactacttctaaaac 28228205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 29272714 - 29272938
Alignment:
Q  1 cttccattcttctatcctcttcccaaacaagttggaacccattatttctaaaactaagggaaggcccgaagcatatgaaactgcacgatttaaaatgcct 100  Q
    ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||    
T  29272714 cttccattcttctatcctctttccaaacaagttggaacccactatttctaaaactaagggaaggcccgaagcatatgaaactgcacgatttaaaacgtct 29272813  T
Q  101 tcaaaacttgaaggaacatt-tcct--ttaaacgccatccacctcaacaattcaagagcttctgtcccatataaaccttttacttcatatggattttcta 197  Q
    ||| || ||||||| || || |  |  ||||| |||||||||||||||||||||||||||| ||||||||| |  |||| ||||||||    | ||| ||    
T  29272814 tcataaattgaaggtactttgttattcttaaaagccatccacctcaacaattcaagagcttttgtcccatacagcccttctacttcatgcatacttttta 29272913  T
Q  198 tcccatgacaggttagtaagtgttt 222  Q
    |||||||||| ||||| ||||||||    
T  29272914 tcccatgacaagttagcaagtgttt 29272938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 3588 - 3796
Alignment:
Q  1 cttccattcttctatcctcttcccaaacaagttggaacccattatttctaaaactaagggaaggcccgaagcatatgaaactgcacgatttaaaatgcct 100  Q
    |||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||    
T  3588 cttccattcttctatcgtctttccaaacaagttggaacccactatttctaaaactaagggaaggcccgaagcatatgaaactgcacgatttaaaacgtct 3687  T
Q  101 tcaaaacttgaaggaacatt-tcct--ttaaacgccatccacctcaacaattcaagagcttctgtcccatataaaccttttacttcatatggattttcta 197  Q
    ||| |||||||||| || || |  |  ||||| |||||||| |||||||| |||||||||||||||||||| |  ||||| |||||||  | | ||||||    
T  3688 tcataacttgaaggtactttgttattcttaaaagccatccatctcaacaactcaagagcttctgtcccatacagccctttcacttcatgcgtactttcta 3787  T
Q  198 tcccatgac 206  Q
    |||||||||    
T  3788 tcccatgac 3796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 12551 - 12775
Alignment:
Q  1 cttccattcttctatcctcttcccaaacaagttggaacccattatttctaaaactaagggaaggcccgaagcatatgaaactgcacgatttaaaatgcct 100  Q
    |||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||    
T  12551 cttccattcttctatcgtctttccaaacaagttggaacccactatttctaaaactaagggaaggcccgaagcatatgaaactgcacgatttaaaacgtct 12650  T
Q  101 tcaaaacttgaaggaacatt-tcct--ttaaacgccatccacctcaacaattcaagagcttctgtcccatataaaccttttacttcatatggattttcta 197  Q
    ||| |||||||||| || || |  |  ||||| |||||||| |||||||| |||||||||||||| ||||| |  ||||| |||||||  | | ||| ||    
T  12651 tcataacttgaaggtactttgttattcttaaaagccatccatctcaacaactcaagagcttctgttccatacagccctttcacttcatgcgtacttttta 12750  T
Q  198 tcccatgacaggttagtaagtgttt 222  Q
    |||||||||   |||||||||||||    
T  12751 tcccatgacttcttagtaagtgttt 12775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 8793 - 8569
Alignment:
Q  1 cttccattcttctatcctcttcccaaacaagttggaacccattatttctaaaactaagggaaggcccgaagcatatgaaactgcacgatttaaaatgcct 100  Q
    |||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||    
T  8793 cttccattcttctatcgtctttccaaacaagttggaacccactatttctaaaactaagggaaggcccgaagcatatgaaactgcacgatttaaaacgtct 8694  T
Q  101 tcaaaacttgaaggaacatt-tcct--ttaaacgccatccacctcaacaattcaagagcttctgtcccatataaaccttttacttcatatggattttcta 197  Q
    ||| |||||||||| || || |  |  ||||| |||||||| |||||||| |||||||||||||| ||||| |  ||||| |||||||  | | ||| ||    
T  8693 tcataacttgaaggtactttgttattcttaaaagccatccatctcaacaactcaagagcttctgttccatacagccctttcacttcatgcgtacttttta 8594  T
Q  198 tcccatgacaggttagtaagtgttt 222  Q
    |||||||||   |||||||||||||    
T  8593 tcccatgacttcttagtaagtgttt 8569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 2415 - 2639
Alignment:
Q  1 cttccattcttctatcctcttcccaaacaagttggaacccattatttctaaaactaagggaaggcccgaagcatatgaaactgcacgatttaaaatgcct 100  Q
    ||||||||| |||||  |||| ||| | ||||| ||||||| |||||||| |||||| |||||||| |||||||||| ||||||||| ||||||||  ||    
T  2415 cttccattcctctatgttctttccagataagttagaacccactatttctataactaacggaaggccagaagcatatgcaactgcacggtttaaaatctct 2514  T
Q  101 tcaaaacttgaaggaacatt---tcctttaaacgccatccacctcaacaattcaagagcttctgtcccatataaaccttttacttcatatggattttcta 197  Q
    ||  ||| ||||||||||||    | |||||| |||||||||||||||||||||||||||||||||||||| || |||| ||||||||    | ||| ||    
T  2515 tcgtaacctgaaggaacattgtcacttttaaaagccatccacctcaacaattcaagagcttctgtcccatacaacccttctacttcatgcatacttttta 2614  T
Q  198 tcccatgacaggttagtaagtgttt 222  Q
    |||||||||||||||||||||||||    
T  2615 tcccatgacaggttagtaagtgttt 2639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 3e-44; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 28126551 - 28126775
Alignment:
Q  1 cttccattcttctatcctcttcccaaacaagttggaacccattatttctaaaactaagggaaggcccgaagcatatgaaactgcacgatttaaaatgcct 100  Q
    ||||||||||||||| ||||| ||||| ||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||| || |||||||   |     
T  28126551 cttccattcttctatgctctttccaaataagttggaacccactatttctataactaagggaaggcctgaagcatatgaaactgcccggtttaaaacatca 28126650  T
Q  101 tcaaaacttgaaggaac---atttcctttaaacgccatccacctcaacaattcaagagcttctgtcccatataaaccttttacttcatatggattttcta 197  Q
    ||| |||||||||||||    ||   |||||| ||||||||||||||||||||||| |||| |||  |||| || ||||||||  |||  | | ||||||    
T  28126651 tcataacttgaaggaactttgttatgtttaaaagccatccacctcaacaattcaagtgcttttgttacatacaacccttttaccgcatgcgtactttcta 28126750  T
Q  198 tcccatgacaggttagtaagtgttt 222  Q
    |||||||||||||||||||||||||    
T  28126751 tcccatgacaggttagtaagtgttt 28126775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 267216 - 267434
Alignment:
Q  1 cttccattcttctatcctcttcccaaacaagttggaacccattatttctaaaactaagggaaggcccgaagcatatgaaactgcacgatttaaaatgcct 100  Q
    ||||||||||||||| ||||| ||||||||||| |||||||  |||||||||||||| |||||||| |||||||| | |||||||||| |||||||  |     
T  267216 cttccattcttctatgctctttccaaacaagttagaacccacaatttctaaaactaacggaaggccagaagcataagcaactgcacgaattaaaatctca 267315  T
Q  101 tcaaaacttgaaggaac---atttcctttaaacgccatccacctcaacaattcaagagcttctgtcccatataaaccttttacttcatatggattttcta 197  Q
    |   || |||| |||||   ||    |||||| |||||||| |||||||||||||||||||| |||||||| || |||| ||||||||  | | ||||||    
T  267316 ttgtaaattgatggaactggatcatttttaaaagccatccaactcaacaattcaagagcttcggtcccatacaacccttctacttcatgcgtactttcta 267415  T
Q  198 tcccatgacaggttagtaa 216  Q
    |||||||||||||||||||    
T  267416 tcccatgacaggttagtaa 267434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 47 - 222
Target Start/End: Original strand, 28163298 - 28163476
Alignment:
Q  47 tctaaaactaagggaaggcccgaagcatatgaaactgcacgatttaaaatgccttcaaaacttgaaggaac---atttcctttaaacgccatccacctca 143  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||||   ||||| |||||||||||||    ||   |||||| ||||||||| |||    
T  28163298 tctataactaagggaaggcctgaagcatatgaaactgcacgatttaaaacatcttcataacttgaaggaactttgttatttttaaaagccatccacgtca 28163397  T
Q  144 acaattcaagagcttctgtcccatataaaccttttacttcatatggattttctatcccatgacaggttagtaagtgttt 222  Q
    |||||||||| ||||| |||||||| || |||| |||   ||    | |||||||||||||||||||||||||||||||    
T  28163398 acaattcaagcgcttccgtcccatacaacccttctaccgaatgcatactttctatcccatgacaggttagtaagtgttt 28163476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 28132377 - 28132426
Alignment:
Q  1 cttccattcttctatcctcttcccaaacaagttggaacccattatttcta 50  Q
    ||||||||||||||| ||||| ||||| ||||| ||||||| ||||||||    
T  28132377 cttccattcttctatgctctttccaaataagtttgaacccactatttcta 28132426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 5 - 224
Target Start/End: Complemental strand, 60871 - 60649
Alignment:
Q  5 cattcttctatcctcttcccaaacaagttggaacccattatttctaaaactaagggaaggcccgaagcatatgaaactgcacgatttaaaatgccttcaa 104  Q
    |||||||||||  |||| ||||||||||| ||||||| |||||||| |||||  |||||||| |||||||| | |||| ||||||| |||||   ||||     
T  60871 cattcttctatgttctttccaaacaagttagaacccactatttctataactaccggaaggccagaagcataagcaactacacgattcaaaatcttttcat 60772  T
Q  105 aacttgaaggaacatttcc---tttaaacgccatccacctcaacaattcaagagcttctgtcccatataaaccttttacttcatatggattttctatccc 201  Q
    ||||||||||||| ||  |   |||||| ||||||||||||||||||||||||||||||||| |||  || ||||||||| ||||||  ||||||||| |    
T  60771 aacttgaaggaactttgtcatttttaaaagccatccacctcaacaattcaagagcttctgtcacattcaacccttttactgcatatgttttttctatctc 60672  T
Q  202 atgacaggttagtaagtgtttat 224  Q
    |||||||| ||||||||||||||    
T  60671 atgacaggctagtaagtgtttat 60649  T

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Target: chr4 (Bit Score: 89; Significance: 5e-43; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 5 - 224
Target Start/End: Complemental strand, 18075063 - 18074841
Alignment:
Q  5 cattcttctatcctcttcccaaacaagttggaacccattatttctaaaactaagggaaggcccgaagcatatgaaactgcacgatttaaaatgccttcaa 104  Q
    |||||||||||  |||| ||||||||||| ||||||| |||||||| |||||  |||||||| |||||||| | |||| ||||||| |||||   ||||     
T  18075063 cattcttctatgttctttccaaacaagttagaacccactatttctataactaccggaaggccagaagcataagcaactacacgattcaaaatcttttcat 18074964  T
Q  105 aacttgaaggaacatttcc---tttaaacgccatccacctcaacaattcaagagcttctgtcccatataaaccttttacttcatatggattttctatccc 201  Q
    ||||||||||||| ||  |   |||||| ||||||||||||||||||||||||||||||||| |||  || ||||||||| ||||||  ||||||||| |    
T  18074963 aacttgaaggaactttgtcatttttaaaagccatccacctcaacaattcaagagcttctgtcacattcaacccttttactgcatatgttttttctatctc 18074864  T
Q  202 atgacaggttagtaagtgtttat 224  Q
    |||||||| ||||||||||||||    
T  18074863 atgacaggctagtaagtgtttat 18074841  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 156
Target Start/End: Original strand, 18722973 - 18723115
Alignment:
Q  17 ctcttcccaaacaagttggaacccattatttctaaaactaagggaaggcccgaagcatatgaaactgcacgatttaaaatgccttcaaaacttgaaggaa 116  Q
    ||||| ||||||||||||||||||| || ||||| | |||| |||||||| |||||||| | |||||| || ||||||||  ||||| ||||||||||||    
T  18722973 ctctttccaaacaagttggaacccactacttctatagctaatggaaggccagaagcatacgcaactgctcggtttaaaatctcttcataacttgaaggaa 18723072  T
Q  117 catt---tcctttaaacgccatccacctcaacaattcaagagc 156  Q
    | ||    | |||||| ||||||||||||||||||||||||||    
T  18723073 ctttgtaacttttaaaagccatccacctcaacaattcaagagc 18723115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 18 - 156
Target Start/End: Original strand, 18678449 - 18678590
Alignment:
Q  18 tcttcccaaacaagttggaacccattatttctaaaactaagggaaggcccgaagcatatgaaactgcacgatttaaaatgccttcaaaacttgaaggaac 117  Q
    |||| ||||||||||||||||||| || ||||| | |||| |||||||| ||||||||   ||||||||| ||||||||  ||||| |||||||||||||    
T  18678449 tctttccaaacaagttggaacccactacttctatagctaatggaaggccagaagcatacacaactgcacgttttaaaatctcttcataacttgaaggaac 18678548  T
Q  118 att---tcctttaaacgccatccacctcaacaattcaagagc 156  Q
     ||    | |||||| ||||||||||||||||||||||||||    
T  18678549 tttgtaacttttaaaagccatccacctcaacaattcaagagc 18678590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 156
Target Start/End: Original strand, 18654365 - 18654507
Alignment:
Q  17 ctcttcccaaacaagttggaacccattatttctaaaactaagggaaggcccgaagcatatgaaactgcacgatttaaaatgccttcaaaacttgaaggaa 116  Q
    ||||| |||||||||||||||||||  | ||||| | |||| |||||||| |||||||| | ||||||||| ||||||||  ||||| ||||||||||||    
T  18654365 ctctttccaaacaagttggaacccacgacttctatagctaatggaaggccagaagcatacgcaactgcacggtttaaaatctcttcataacttgaaggaa 18654464  T
Q  117 catt---tcctttaaacgccatccacctcaacaattcaagagc 156  Q
    | ||      |||||| ||||||||||||||||||||||||||    
T  18654465 ctttgtaaattttaaaagccatccacctcaacaattcaagagc 18654507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 156
Target Start/End: Original strand, 18688514 - 18688656
Alignment:
Q  17 ctcttcccaaacaagttggaacccattatttctaaaactaagggaaggcccgaagcatatgaaactgcacgatttaaaatgccttcaaaacttgaaggaa 116  Q
    ||||| ||||||||||||||||||| || ||||| | |||| |||||||| ||||||||    |||||||| ||||||||  ||||| ||||||||||||    
T  18688514 ctctttccaaacaagttggaacccactacttctatagctaatggaaggccagaagcatacacgactgcacggtttaaaatctcttcataacttgaaggaa 18688613  T
Q  117 c---atttcctttaaacgccatccacctcaacaattcaagagc 156  Q
    |   ||  | |||||| ||||||||||||||||||||||||||    
T  18688614 ctttataacttttaaaagccatccacctcaacaattcaagagc 18688656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 156
Target Start/End: Original strand, 18698288 - 18698430
Alignment:
Q  17 ctcttcccaaacaagttggaacccattatttctaaaactaagggaaggcccgaagcatatgaaactgcacgatttaaaatgccttcaaaacttgaaggaa 116  Q
    ||||| ||||||||||||||||||| || ||||| | |||| |||||||| ||||||||   ||||||| | || |||||  ||||| ||||||||||||    
T  18698288 ctctttccaaacaagttggaacccactacttctagagctaatggaaggccagaagcatacacaactgcatggttaaaaatctcttcataacttgaaggaa 18698387  T
Q  117 catt---tcctttaaacgccatccacctcaacaattcaagagc 156  Q
    | ||      |||||| ||||||||||||||||||||||||||    
T  18698388 ctttgtaatttttaaaagccatccacctcaacaattcaagagc 18698430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 156
Target Start/End: Original strand, 18730392 - 18730534
Alignment:
Q  17 ctcttcccaaacaagttggaacccattatttctaaaactaagggaaggcccgaagcatatgaaactgcacgatttaaaatgccttcaaaacttgaaggaa 116  Q
    ||||| ||||||||||||||||||| || ||||| | |||| |||||||| ||||||||   ||||||| | || |||||  ||||| ||||||||||||    
T  18730392 ctctttccaaacaagttggaacccactacttctagagctaatggaaggccagaagcatacacaactgcatggttaaaaatctcttcataacttgaaggaa 18730491  T
Q  117 catt---tcctttaaacgccatccacctcaacaattcaagagc 156  Q
    | ||      |||||| ||||||||||||||||||||||||||    
T  18730492 ctttgtaatttttaaaagccatccacctcaacaattcaagagc 18730534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1870 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold1870
Description:

Target: scaffold1870; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 75 - 1
Alignment:
Q  1 cttccattcttctatcctcttcccaaacaagttggaacccattatttctaaaactaagggaaggcccgaagcata 75  Q
    |||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  75 cttccattcttctatcgtctttccaaacaagttggaacccactatttctaaaactaagggaaggcccgaagcata 1  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 75
Target Start/End: Complemental strand, 16692172 - 16692099
Alignment:
Q  2 ttccattcttctatcctcttcccaaacaagttggaacccattatttctaaaactaagggaaggcccgaagcata 75  Q
    ||||||||||||||  |||| ||||||||||| || || | || ||||||| |||| |||||||| ||||||||    
T  16692172 ttccattcttctatattctttccaaacaagttagatcctactacttctaaagctaatggaaggccagaagcata 16692099  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 96
Target Start/End: Original strand, 17992113 - 17992186
Alignment:
Q  23 ccaaacaagttggaacccattatttctaaaactaagggaaggcccgaagcatatgaaactgcacgatttaaaat 96  Q
    ||||||||||||||||||| || ||||||| |||| || ||||| | |||||||  |||| |||| ||||||||    
T  17992113 ccaaacaagttggaacccactacttctaaagctaatgggaggccagcagcatatttaactacacggtttaaaat 17992186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 28755 - 28703
Alignment:
Q  2 ttccattcttctatcctcttcccaaacaagttggaacccattatttctaaaac 54  Q
    ||||||||||| ||  |||||||||||||||| ||||||| || |||||||||    
T  28755 ttccattcttcaatattcttcccaaacaagtttgaacccactacttctaaaac 28703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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