View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3470_low_79 (Length: 238)
Name: NF3470_low_79
Description: NF3470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3470_low_79 |
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Alignment Details
Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 105 - 196
Target Start/End: Original strand, 32600335 - 32600427
Alignment:
| Q |
105 |
ttgcataaagttagttattgatcatatagttgtaattttg-aaaaaataattnnnnnnnngtcttatgaatgtagtacgagacgagaatgacc |
196 |
Q |
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| T |
32600335 |
ttgcataaagttagttattgatcatatagttgtaattttgaaaaaaataattaaaaaaaagtcttatgaatgtagtacgagacgagaatgacc |
32600427 |
T |
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Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 61
Target Start/End: Original strand, 32600214 - 32600260
Alignment:
| Q |
15 |
ggagtagctgtagtataagtaagcaaatatacacataaaaacgcaat |
61 |
Q |
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| T |
32600214 |
ggagtagctgtagtataagtaagcaaatatacacataaaaacgcaat |
32600260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 155
Target Start/End: Original strand, 32603818 - 32603869
Alignment:
| Q |
104 |
gttgcataaagttagttattgatcatatagttgtaattttgaaaaaataatt |
155 |
Q |
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| T |
32603818 |
gttgcataaagttagtcattgatcatatagttgtagttctgcaaaaataatt |
32603869 |
T |
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