View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3470_low_80 (Length: 237)
Name: NF3470_low_80
Description: NF3470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3470_low_80 |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 37431333 - 37431546
Alignment:
| Q |
1 |
tttgcatgctatgtttttgtaaacaaatttttgaggaggtttaatggttggtactatcatctcaaattaagaaacaaagagtaccctttgcctccaggtg |
100 |
Q |
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| T |
37431333 |
tttgcatgctatgtttttgtaaacaaatttttgaggaggtttaatggttggtactatcatctcaaattaagaaacaaagagtaccctttgcctccaggtg |
37431432 |
T |
|
| Q |
101 |
atatgggatggccacttattggcaacctattatcatttaacaaaaacttctcatctggccaacctgattcattcaccaccaaccttattctcaagtatct |
200 |
Q |
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| T |
37431433 |
atatgggatggccacttattggcaacctattatcatttaacaaaaacttctcatctggccaacctgattcattcaccaccaaccttattctcaagtatct |
37431532 |
T |
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| Q |
201 |
ttcgttttctcacc |
214 |
Q |
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| T |
37431533 |
ttcgttttctcacc |
37431546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 210
Target Start/End: Complemental strand, 11805050 - 11804922
Alignment:
| Q |
82 |
taccctttgcctccaggtgatatgggatggccacttattggcaacctattatcatttaacaaaaacttctcatctggccaacctgattcattcaccacca |
181 |
Q |
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| T |
11805050 |
taccctctacctcctggtcatttgggatggcctctcattggcaacatgttagcttttgttaaagatttctcatctggtcatcctgattcattcatcacca |
11804951 |
T |
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| Q |
182 |
accttattctcaagtatctttcgttttct |
210 |
Q |
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| T |
11804950 |
accttgtttccaagtctctttctttttct |
11804922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 122
Target Start/End: Complemental strand, 11819055 - 11819001
Alignment:
| Q |
68 |
taagaaacaaagagtaccctttgcctccaggtgatatgggatggccacttattgg |
122 |
Q |
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| T |
11819055 |
taagaaagaaacagtaccctctgcctcctggtcatttgggatggccacttattgg |
11819001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 130
Target Start/End: Complemental strand, 150842 - 150717
Alignment:
| Q |
5 |
catgctatgtttttgtaaacaaatttttgaggaggtttaatggttggtactatcatctcaaattaagaaacaaagagtaccctttgcctccaggtgatat |
104 |
Q |
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| T |
150842 |
catgctacatttttgttagcaaagttatgaggaacttgaatggatggtattatgatcttaaatttaaaaacaaacaatatccactgcctcccggtgatat |
150743 |
T |
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| Q |
105 |
gggatggccacttattggcaacctat |
130 |
Q |
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| T |
150742 |
gggatggccttttattggaaacctat |
150717 |
T |
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