View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3470_low_81 (Length: 237)
Name: NF3470_low_81
Description: NF3470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3470_low_81 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 8 - 220
Target Start/End: Original strand, 50275148 - 50275360
Alignment:
| Q |
8 |
gtgagatgaaatcatttatgacaaggagagcacgagcagcttggtgcgcagtcaaaattcgacgcatctgttgcagtgtttgttgcctcaagatatccgc |
107 |
Q |
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| T |
50275148 |
gtgaaatgaaatcatttatgacaaggagagcacgagcagcttggtgcgcagtcaaaattcgacgcatctgttgcagtgtttgttgcctcaagatatctgc |
50275247 |
T |
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| Q |
108 |
ctaagaaaaacaataatgctcaaaatgttatcactctcaattaaatgtggaataagataatgttgagtgatcaagattacattgtcttaattaattacct |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50275248 |
ctaagaaaaacaataatgctcaaaatgttatcactctcaattaaatgtggaataagataatgttgagtgatcaagattacattgtcttaattaattacct |
50275347 |
T |
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| Q |
208 |
gatgaatgaaagt |
220 |
Q |
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||||||||||||| |
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| T |
50275348 |
gatgaatgaaagt |
50275360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 8 - 220
Target Start/End: Original strand, 50279172 - 50279384
Alignment:
| Q |
8 |
gtgagatgaaatcatttatgacaaggagagcacgagcagcttggtgcgcagtcaaaattcgacgcatctgttgcagtgtttgttgcctcaagatatccgc |
107 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
50279172 |
gtgaaatgaaatcatttatgacaaggagagcacgagcagcttggtgcgcagtcaaaattcgacgcatctgttgcagtgtttgttgcctcaagatatctgc |
50279271 |
T |
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| Q |
108 |
ctaagaaaaacaataatgctcaaaatgttatcactctcaattaaatgtggaataagataatgttgagtgatcaagattacattgtcttaattaattacct |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50279272 |
ctaagaaaaacaataatgctcaaaatgttatcactctcaattaaatgtggaataagataatgttgagtgatcaagattacattgtcttaattaattacct |
50279371 |
T |
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| Q |
208 |
gatgaatgaaagt |
220 |
Q |
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||||||||||||| |
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| T |
50279372 |
gatgaatgaaagt |
50279384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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