View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3470_low_83 (Length: 236)

Name: NF3470_low_83
Description: NF3470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3470_low_83
NF3470_low_83
[»] chr3 (2 HSPs)
chr3 (134-222)||(43490249-43490337)
chr3 (1-69)||(43490116-43490184)
[»] chr8 (1 HSPs)
chr8 (1-69)||(38653192-38653260)
[»] chr6 (1 HSPs)
chr6 (2-69)||(13409896-13409963)
[»] chr1 (1 HSPs)
chr1 (1-69)||(44331826-44331894)
[»] chr7 (2 HSPs)
chr7 (1-69)||(6568909-6568977)
chr7 (1-69)||(6583068-6583136)


Alignment Details
Target: chr3 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 134 - 222
Target Start/End: Original strand, 43490249 - 43490337
Alignment:
Q  134 ttatattcgtatactgcattccccatttctcttgttattcttgttgttgtcctattaatgcttgaactttctgcaactgcattattatt 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43490249 ttatattcgtatactgcattccccatttctcttgttattcttgttgttgtcctattaatgcttgaactttctgcaactgcattattatt 43490337  T

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Target: chr3; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 43490116 - 43490184
Alignment:
Q  1 aaatgttcctaaccatactcttgctgctttgaatggatctcttatctctgctgcccattttccccatgg 69  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43490116 aaatgttcctaaccatactcttgctgctttgaatggatctcttatctctgctgcccattttccccatgg 43490184  T

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Target: chr8 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 38653192 - 38653260
Alignment:
Q  1 aaatgttcctaaccatactcttgctgctttgaatggatctcttatctctgctgcccattttccccatgg 69  Q
    |||||| ||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||    
T  38653192 aaatgtacctaaccatactcttgtagctttgaaaggatctcttatctctgctgcccattttccccatgg 38653260  T

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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 69
Target Start/End: Complemental strand, 13409963 - 13409896
Alignment:
Q  2 aatgttcctaaccatactcttgctgctttgaatggatctcttatctctgctgcccattttccccatgg 69  Q
    |||||||||| ||||||||||  |||||||  |||||||||||| |||||||||||||||||||||||    
T  13409963 aatgttcctagccatactctttgtgctttgtgtggatctcttatttctgctgcccattttccccatgg 13409896  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 44331826 - 44331894
Alignment:
Q  1 aaatgttcctaaccatactcttgctgctttgaatggatctcttatctctgctgcccattttccccatgg 69  Q
    ||||||||| | |||||||||||||||||||  ||||||||  || |||||||||||||||||||||||    
T  44331826 aaatgttccaagccatactcttgctgctttgtgtggatctcgaatttctgctgcccattttccccatgg 44331894  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 6568977 - 6568909
Alignment:
Q  1 aaatgttcctaaccatactcttgctgctttgaatggatctcttatctctgctgcccattttccccatgg 69  Q
    ||||||||||||||| ||||| ||||||||   ||| || | ||| || ||||||||||||||||||||    
T  6568977 aaatgttcctaaccaaactctagctgctttttttgggtcacgtatttcagctgcccattttccccatgg 6568909  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 6583136 - 6583068
Alignment:
Q  1 aaatgttcctaaccatactcttgctgctttgaatggatctcttatctctgctgcccattttccccatgg 69  Q
    ||||||||||||||| ||||| ||||||||   ||| || | ||| || ||||||||||||||||||||    
T  6583136 aaatgttcctaaccaaactctagctgctttttttgggtcacgtatttcagctgcccattttccccatgg 6583068  T

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