View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3470_low_86 (Length: 221)
Name: NF3470_low_86
Description: NF3470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3470_low_86 |
 | |
|
| [»] scaffold0003 (3 HSPs) |
| | |
|
Alignment Details
Target: scaffold0003 (Bit Score: 161; Significance: 5e-86; HSPs: 3)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 108650 - 108453
Alignment:
| Q |
1 |
catacaatatttattacttgtaaatgggagacaatatggttgaagttaccaaattagttactattatgcttatatttcttaccttatttgttgtagcatt |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
108650 |
catacaatatttattacttgtaaaggggagaaaatatggttgaagttaccaaattagttaatattatgcttatatttcttaccttatttgttgtagcatt |
108551 |
T |
|
| Q |
101 |
gagcattgacagtaagccgttttatatccttttcaaatctctctcgttacttactaagttactacgtaatgttttatctaatttaatttataccatttat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
108550 |
gagcattgacagtaagccgttttatatccttttcaaatttctctcgttactt--------actacgtaatgttttatctaatttaatttataccatttat |
108459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 88586 - 88446
Alignment:
| Q |
1 |
catacaatatttattacttgtaaatgggagacaatatggttgaagttaccaaattagttactattatgcttatatttcttaccttatttgttgtagcatt |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||| | |||||||||| ||||||||| |||||||||| ||||| |
|
|
| T |
88586 |
catacaatatttattacttgtaaaggggtgacaatatggttgaagttaccaagttagttaatgttatgcttatctttcttaccctatttgttgttgcatt |
88487 |
T |
|
| Q |
101 |
gagcattgacagtaagccgttttatatccttttcaaatctc |
141 |
Q |
| |
|
||| ||||||||||||||||| || |||||||||||||| |
|
|
| T |
88486 |
gagtgatgacagtaagccgttttctagccttttcaaatctc |
88446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 103969 - 103832
Alignment:
| Q |
1 |
catacaatatttattacttgtaaatgggagacaatatggttgaagttaccaaattagttactattatgcttatatttcttaccttatttgttgtagcatt |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||| | |||||||||| ||||||||| |||||||||| ||||| |
|
|
| T |
103969 |
catacaatatttattacttgtaaaggggagaaaatatggttgaagttaccaagttagttaatgttatgcttatctttcttaccctatttgttgttgcatt |
103870 |
T |
|
| Q |
101 |
gagcattgacagtaagccgttttatatccttttcaaat |
138 |
Q |
| |
|
||| | |||||||||||| |||| || ||||||||||| |
|
|
| T |
103869 |
gagtaatgacagtaagcctttttctaaccttttcaaat |
103832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University