View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3470_low_87 (Length: 214)
Name: NF3470_low_87
Description: NF3470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3470_low_87 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 44186347 - 44186562
Alignment:
| Q |
1 |
ccttctttcgtttcgccgaattaggagttgggtgtttctgtatccaaagtttatagcgttcactcaagagctttatgagtactgttgttgttaggattta |
100 |
Q |
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| T |
44186347 |
ccttctttcgtttcgccgaattaggagttaggtgtttctgtatccaaactttatagcgttcactcaagagctttatgagtactgttgttgttaggattta |
44186446 |
T |
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| Q |
101 |
agattttatttccaagttgaatgttctgaagccatttcaatagaaatgggcttgctgttttcttg--taatacatttatgatatgaaccttcctttacca |
198 |
Q |
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| T |
44186447 |
agattttatttccaagttgaatgttctgaagccatttcaatagaaatgggcttgctgttttcttgtataatacatttatgatatgaaccttcctttacca |
44186546 |
T |
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| Q |
199 |
ttattatttcaatgct |
214 |
Q |
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|||||||||||||||| |
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| T |
44186547 |
ttattatttcaatgct |
44186562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 9 - 214
Target Start/End: Original strand, 4878237 - 4878446
Alignment:
| Q |
9 |
cgtttcgccgaattaggagttgggtgtttctgtatccaaagtttatagcgttcactcaagagctttatgagtactgttgttgttaggatttaagatttta |
108 |
Q |
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|||| ||||||||||||| || ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4878237 |
cgttacgccgaattaggaattaggtgtttctgtatcccaagtttatagcgttcacccaagagctttatgagtactgttgttgttaggatttaagatttta |
4878336 |
T |
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| Q |
109 |
tttccaagttgaatgttctgaagccatttcaatagaaatgggcttgct--gttttcttgta--atacatttatgatatgaaccttcctttaccattatta |
204 |
Q |
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| T |
4878337 |
tttccaagttgaatgttctgaagccatttcaatacaaatgggcatgcttagtgtacgagaaagacacatttgtgatatgaacctttctttaccattttta |
4878436 |
T |
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| Q |
205 |
tttcaatgct |
214 |
Q |
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| T |
4878437 |
tttcaatgct |
4878446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 5 - 116
Target Start/End: Original strand, 1327501 - 1327612
Alignment:
| Q |
5 |
ctttcgtttcgccgaattaggagttgggtgtttctgtatccaaagtttatagcgttcactcaagagctttatgagtactgttgttgttaggatttaagat |
104 |
Q |
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| T |
1327501 |
ctttcgtttatcggaattaggaattaggtgtttttgtatcccaagtttatagctttcacccaagagctttatgagtattcttgttgttaggatttaagat |
1327600 |
T |
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| Q |
105 |
tttatttccaag |
116 |
Q |
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|||||| ||||| |
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| T |
1327601 |
tttattaccaag |
1327612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 162
Target Start/End: Original strand, 1327623 - 1327672
Alignment:
| Q |
113 |
caagttgaatgttctgaagccatttcaatagaaatgggcttgctgttttc |
162 |
Q |
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| T |
1327623 |
caagttgaatattctgaagccatttcaatacaaattggctttctgttttc |
1327672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 214
Target Start/End: Original strand, 1327716 - 1327753
Alignment:
| Q |
177 |
tgatatgaaccttcctttaccattattatttcaatgct |
214 |
Q |
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| T |
1327716 |
tgatatgaacctttctttaccattattatttcaatgct |
1327753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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