View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3471_high_17 (Length: 375)
Name: NF3471_high_17
Description: NF3471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3471_high_17 |
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Alignment Details
Target: chr6 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 5611818 - 5611455
Alignment:
| Q |
1 |
gaggtcatatgttttttgagagtaaccaacgagggggatcaagtcaacct-agcatgtgaatatgcactcattcaaacacaaacttcgatggatttgatg |
99 |
Q |
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| T |
5611818 |
gaggacatatgttttttgagagtaaccaacgagggggatcaagtcaaccttagcatgtgaatatgcactcattcaaacacaaacttcgatggatttgatg |
5611719 |
T |
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| Q |
100 |
aatttattttgcaacaatcattttatgttcttatagtgacctcacacataataatatttgttactataaagcatgtgattaggtaggttaggaagtatct |
199 |
Q |
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| T |
5611718 |
aatttattttgcaacaatcattttatgttcttatagtgacctcacacataataatatttgttactataaagcatgtgattaggtaggttaggaagtatct |
5611619 |
T |
|
| Q |
200 |
tacacatgcttgcaatcttaatataaacacaagatacaatcttattcaaacttcttataatgtactatagannnnnnngtagtatactagacatgattaa |
299 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
5611618 |
tacacatgcttgcaatcttaaaataaacacaagatacaatcttattcaaacttcttataatgtactataga-ttttttgtagtatactagacatgattaa |
5611520 |
T |
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| Q |
300 |
taacataatattcctttttccctttaataatgattcttttccattgtgaaattagtggggttcat |
364 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||| |
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| T |
5611519 |
taacataatattcctttttccctttaattatgattcttttccattgtgcaattaatggggttcat |
5611455 |
T |
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