View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3471_high_18 (Length: 369)
Name: NF3471_high_18
Description: NF3471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3471_high_18 |
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| [»] scaffold0391 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-143; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 33973306 - 33973575
Alignment:
| Q |
1 |
aatagttgaaacagcacgaaagaaccaaagtgcaaggctattgttgaggttaatcttaaaggatttatctcccgttgtacaagatataaagcattacaat |
100 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33973306 |
aatagttgaaacagcacgaaagaaccaaagttcaaggctattgtttaggttaatcttaaaggatttatctcccgttgtacaagatataaagcattacaat |
33973405 |
T |
|
| Q |
101 |
gaacacttggatcaacccagagaagaaataaatagtttgatagaagaaagtgcatgcaaatcttcttttgagaatgattcctacgttgttgatgagaacc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33973406 |
gaacacttggatcaacccagagaagaaataaatagtttgatagaagaaagtgcatgcaaatcttcttttgagaatgattcctacgttgttgatgagaacc |
33973505 |
T |
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| Q |
201 |
aatctcttattgtaaaggatgtcgaagagacactttacaaggccagagaaattcttgagcttctcaacca |
270 |
Q |
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| T |
33973506 |
aatctcttattgtaaatgatgtcgaagagacactttacaaggccagagaaattcttgagcttctcaacca |
33973575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 13 - 351
Target Start/End: Original strand, 33950654 - 33951013
Alignment:
| Q |
13 |
agcacgaaagaaccaaagtgcaaggctattgttgaggttaatcttaaaggatttatctcccgttgtacaagatataaagcattacaatgaacacttggat |
112 |
Q |
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||||| ||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||| |
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| T |
33950654 |
agcacaaaagaaccaaagttcaaggcgatcattgaggttaatcttaaaggatttatctcccgttgtacaagatataaagcaatacaatgatcatttggat |
33950753 |
T |
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| Q |
113 |
caacccagagaagaaataaatagtttgatagaagaaa---------------gtgcatgcaaatcttcttttgagaatgattcctacg------ttgttg |
191 |
Q |
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|| ||||||||||||||||||||| |||||||||||| ||||||| | || ||||| ||||||||||||||| | |||||| |
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| T |
33950754 |
caccccagagaagaaataaatagtctgatagaagaaaatgatgcaggagaaagtgcatgtacatgttcttctgagaatgattcctatggctatgttgttg |
33950853 |
T |
|
| Q |
192 |
atgagaaccaatctcttattgtaaaggatgtcgaagagacactttacaaggccagagaaattcttgagcttctcaaccatgaattcaatgaagatggaca |
291 |
Q |
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| |||||||||||||||| |||||| ||||| |||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33950854 |
aggagaaccaatctcttactgtaaatgatgttgaagagacgctttataagaccagagaaattcttgagcttctcaaccatgaattcaatgaagatggaca |
33950953 |
T |
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| Q |
292 |
acttttcaagcgtcctttcgatgttcctgaaaatccaaaattcactgttgggttggatat |
351 |
Q |
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| T |
33950954 |
acttttcaagcgtcctttcaatgttcctgaaaatcaaaaattcactgttgggttggatat |
33951013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 33990118 - 33990498
Alignment:
| Q |
1 |
aatagttgaaacagcacgaaagaaccaaagtgcaaggctattgttgaggttaatcttaaaggatttatctcccgttgtacaagatataaagcattacaat |
100 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||| ||||||||| ||| || || ||||| |||||||| |||||| |
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| T |
33990118 |
aatagttgaaacagcacgaaagcaccaaagtgcaaggcaattgttgaggtcaatcttgaaggatttaactcttgtggttcaagacataaagcaatacaat |
33990217 |
T |
|
| Q |
101 |
gaacacttggatcaacccagagaagaaataaatagttt-------------gat--agaagaaagtgcatgcaaatcttcttttgagaatgattcctacg |
185 |
Q |
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||||| |||||||| |||||||||||||| || | | | ||| |||||||||||||||||||| ||||| ||||||||||||||| | |
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| T |
33990218 |
gaacatttggatcatcccagagaagaaatcaagactctattagaagaaaatgatgcagaagaaagtgcatgcaaatgttcttctgagaatgattcctatg |
33990317 |
T |
|
| Q |
186 |
ttgttgatgagaaccaatctcttattgtaaaggatgtcgaagagacactttacaaggccagagaaattcttgagcttctcaaccatg------------- |
272 |
Q |
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||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||| ||| |
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| T |
33990318 |
ttgttgatgagaaccaatctcttattgtaaatgatgttgaagagacactttataaggccagagaaattcttgagcttctcaactatgaaacttttgaaca |
33990417 |
T |
|
| Q |
273 |
--aattcaatgaagatggacaacttttcaagcgtcctttcgatgttcctgaaaatccaaaattcactgttgggttggatat |
351 |
Q |
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|||||||||||| | || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33990418 |
caaattcaatgaagctaaaccacctttcaagcgtcctttcgatgttcctgaaaatccaaaattcactgttgggttggatat |
33990498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 58 - 270
Target Start/End: Original strand, 33959346 - 33959573
Alignment:
| Q |
58 |
aaaggatttatctcccgttgtacaagatataaagcattacaatgaacacttggatcaacccagagaagaaataaatagtttgatagaagaa--------- |
148 |
Q |
| |
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||||||||||||||| || || ||||| |||||||| |||||||| || |||||||| |||||||| |||||||||||| | ||||||||| |
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| T |
33959346 |
aaaggatttatctcctgtggttcaagacataaagcaatacaatgatcatttggatcaccccagagaggaaataaatagtctaatagaagaaaatgatgca |
33959445 |
T |
|
| Q |
149 |
------agtgcatgcaaatcttcttttgagaatgattcctacgttgttgatgagaaccaatctcttattgtaaaggatgtcgaagagacactttacaagg |
242 |
Q |
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||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||| |||||||| ||| |
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| T |
33959446 |
ggagaaagtgcatgcaaatgttcttctgagaatgattcctatgttgttgatgagaaccaatctcttattgtaaatgatgttgaagaaacactttataagc |
33959545 |
T |
|
| Q |
243 |
ccagagaaattcttgagcttctcaacca |
270 |
Q |
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| |||||||||||||||||||||||||| |
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| T |
33959546 |
caagagaaattcttgagcttctcaacca |
33959573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 320 - 351
Target Start/End: Original strand, 33973577 - 33973608
Alignment:
| Q |
320 |
gaaaatccaaaattcactgttgggttggatat |
351 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
33973577 |
gaaaatccaaaattcactgttgggttggatat |
33973608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0391 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0391
Description:
Target: scaffold0391; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 175 - 264
Target Start/End: Original strand, 10335 - 10424
Alignment:
| Q |
175 |
tgattcctacgttgttgatgagaaccaatctcttattgtaaaggatgtcgaagagacactttacaaggccagagaaattcttgagcttct |
264 |
Q |
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||||||||| || |||||||| ||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||| ||||| |
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| T |
10335 |
tgattcctatgtcgttgatgataaccaatctcttacggtaaatgatgttaaagagacactttacaaggccagagaaattcttgaacttct |
10424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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