View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3471_high_21 (Length: 347)
Name: NF3471_high_21
Description: NF3471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3471_high_21 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 16 - 347
Target Start/End: Complemental strand, 43766724 - 43766393
Alignment:
| Q |
16 |
agaacaaaaagactcatatatgagtgaggagataaatagaagacaaaccactggtgtatcttacaagggaaactatagttctgcgcaccaataccatagc |
115 |
Q |
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| T |
43766724 |
agaacaaaaagactcatatatgagtgaggagataaatagaagacaaaccactggtgtatcttacaagggaaactatagttctgcgcaccaataccatagc |
43766625 |
T |
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| Q |
116 |
caagaccttcatgagggaaggttttctcattctcttgatcactcaaggggtagtggaagatgtaatcatggaaacatgttgcgccaatgtcataaatact |
215 |
Q |
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| T |
43766624 |
caagaccttcatgagggaaggttttctcattctcttgatcactctaggggtagtggaagatgtaatcatggaaacatgttgcaccaatgtcataaatact |
43766525 |
T |
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| Q |
216 |
cgtggataccttttaagctaatgcaacaagttgtgcacaccgtgttgaatgttgatcattcttgttacccatgtttgaatatctcagcatatccgtcact |
315 |
Q |
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| T |
43766524 |
cgtggataccttttaagctaatgcaacaagttttgcacatcgtgttgaatgttgatcattcttgttacccatgttcgaatatctcagcatatccgtcact |
43766425 |
T |
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| Q |
316 |
catcactacgtgttcgtttccaacatgaagat |
347 |
Q |
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| T |
43766424 |
cgtcactacgtgttcgtttccaacatgaagat |
43766393 |
T |
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Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 66 - 263
Target Start/End: Original strand, 42850355 - 42850553
Alignment:
| Q |
66 |
ctggtgtatcttacaagggaaactatagttctgcgcaccaataccatagccaagaccttcatgagggaaggttttctcattctcttgatcactcaagggg |
165 |
Q |
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| T |
42850355 |
ctggtgcatcttacaaggggatccgtagttctgcataccaataccatagccatgaccttcatgagggaaggtcttctaatgctcttgatcactctagatg |
42850454 |
T |
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| Q |
166 |
tagtggaagatgtaatcatggaaacatgttgcgccaatgtcataaatactcgtggatacctt-ttaagctaatgcaacaagttgtgcacaccgtgttga |
263 |
Q |
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| T |
42850455 |
tatcggaagatgtaatcatggaattgcgtcccgccaaaggcataagtacttgcggataccttattcagctgaagcaacaagttgtgcacaccatgttga |
42850553 |
T |
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