View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3471_high_26 (Length: 321)

Name: NF3471_high_26
Description: NF3471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3471_high_26
NF3471_high_26
[»] chr4 (1 HSPs)
chr4 (4-321)||(52981349-52981669)


Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 4 - 321
Target Start/End: Original strand, 52981349 - 52981669
Alignment:
Q  4 gagagatgaagcctgtagttgaagaatagagaaagcagattgaaatttgttgatatactataattaaggtgaatgcagtagagactattttaatgagttt 103  Q
    |||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52981349 gagacatgaagcctcttgttgaagaatagagaaagcagattgaaatttgttgatatactataattaaggtgaatgcagtagagactattttaatgagttt 52981448  T
Q  104 aaatattctattgtgtcaagtgcaaaatggacataaaccaagataaagtttttatggta-ttgagataattttgttgtttatcttaatgcatgtt--tat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  |||    
T  52981449 aaatattctattgtgtcaagtgcaaaatggacataaaccaagataaagtttttatggtatttgagataattttgttgtttatcttaatgcatgtttatat 52981548  T
Q  201 cttatagaaaaatacgaatatatttgttattgttgcattgatgaggtaattttttcaaaattgaaattgttaaaatttatttgcattctacaaagtaaat 300  Q
     |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52981549 tttatagaaaaatacgaatatatttgttattgttgcattgatgagataattttttcaaaattgaaattgttaaaatttatttgcattctacaaagtaaat 52981648  T
Q  301 tagataattttgacttgattt 321  Q
    |||||||||||||||||||||    
T  52981649 tagataattttgacttgattt 52981669  T

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