View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3471_high_27 (Length: 317)
Name: NF3471_high_27
Description: NF3471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3471_high_27 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 13 - 316
Target Start/End: Original strand, 54479578 - 54479881
Alignment:
| Q |
13 |
cagaccctttgatactggaccctttgattatgatgcttgatcactgactcatttcatgcatatcatctattatattttatattagtcttaaggtttgttg |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54479578 |
cagaccctttgatactggaccctttgattatgatgcttgatcactgactcatttcatgcatatcatctattatattttatattagtcttaaggtttgttg |
54479677 |
T |
|
| Q |
113 |
ccatttattttcttatttcgttcatacttcgtcttatacatgcaaatgtataatctcctctatattcaccaaaaacaatacgtacttgtttaatctcctc |
212 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54479678 |
ccatttattttcttatttcgttcatactttgtcttatacatgcaaatgtataatctcctctatattcaccaaaaacaatacgtacttgtttaatctcctc |
54479777 |
T |
|
| Q |
213 |
tatacaagcaatgattctaatgaaagcatgtttttgttaccgcattgatcggtgaatcccattcattgactagtttgtacacattgtgtttacttttctt |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| || |
|
|
| T |
54479778 |
tatacaagcaatgattctaatgaaagcatgtttttgttaccgcattgatcagtgaatcccattcattgactagtttgtacaaattgtgtttacttttatt |
54479877 |
T |
|
| Q |
313 |
tatt |
316 |
Q |
| |
|
|||| |
|
|
| T |
54479878 |
tatt |
54479881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University