View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3471_high_33 (Length: 287)

Name: NF3471_high_33
Description: NF3471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3471_high_33
NF3471_high_33
[»] chr1 (2 HSPs)
chr1 (38-240)||(3367629-3367825)
chr1 (168-212)||(34601645-34601689)
[»] chr2 (1 HSPs)
chr2 (170-212)||(16863453-16863495)
[»] chr5 (1 HSPs)
chr5 (168-213)||(37077648-37077692)


Alignment Details
Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 38 - 240
Target Start/End: Original strand, 3367629 - 3367825
Alignment:
Q  38 ctaattgctgcacacacactctctctccaaattatatgggtaactttgctcaagggnnnnnnnnctttctaaattatatcttgatgaattgggagtaatt 137  Q
    ||||||||||||||||||||| |||||||||||||||||||   ||||||||||||         |||||||||||||||||||||||||||||||||||    
T  3367629 ctaattgctgcacacacactcgctctccaaattatatgggtt--tttgctcaagggttttt----tttctaaattatatcttgatgaattgggagtaatt 3367722  T
Q  138 tacctctaatnnnnnnnntannnnnnnnnncatctttattcttacgatcagttatcgttttcatctcaagaacattnnnnnnnttcatctcaagaacatc 237  Q
    |||||||| |        |           |||||||||||||||||||||||||||||||||||||||||| |||       |||||||||||||||||    
T  3367723 tacctctattaaagaaaattcatttttcttcatctttattcttacgatcagttatcgttttcatctcaagaatattaaaaaaattcatctcaagaacatc 3367822  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 34601689 - 34601645
Alignment:
Q  168 catctttattcttacgatcagttatcgttttcatctcaagaacat 212  Q
    |||||||||||||||||| ||||||  |||||||||||| |||||    
T  34601689 catctttattcttacgattagttattattttcatctcaaaaacat 34601645  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 212
Target Start/End: Original strand, 16863453 - 16863495
Alignment:
Q  170 tctttattcttacgatcagttatcgttttcatctcaagaacat 212  Q
    ||||||||||||| |||||||| | ||||||||||||||||||    
T  16863453 tctttattcttacaatcagttaccattttcatctcaagaacat 16863495  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 213
Target Start/End: Original strand, 37077648 - 37077692
Alignment:
Q  168 catctttattcttacgatcagttatcgttttcatctcaagaacatt 213  Q
    ||||||||||||||  |||||||||| |||||||||||||||||||    
T  37077648 catctttattcttaa-atcagttatcattttcatctcaagaacatt 37077692  T

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