View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3471_high_56 (Length: 247)
Name: NF3471_high_56
Description: NF3471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3471_high_56 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 17 - 247
Target Start/End: Original strand, 43766115 - 43766345
Alignment:
| Q |
17 |
aaatggaactaaatgacttctattcttcagtgatgttgagttccgccttttatatatgagaaatctgcaggttgttgctgcagttctaagcatttatgac |
116 |
Q |
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| T |
43766115 |
aaatggaactaaatgacttctattcttcagtgatgtagagttccgccttttatatatgagaaatctgcaggttgttgctgcagttctaagcatttatgac |
43766214 |
T |
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| Q |
117 |
aagtgacaaaaggagctacacctgctactggcttgtgatgttgcatagccaagttcggtttctcatttaagtatttcctctatgtagtagccccatgcgt |
216 |
Q |
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| T |
43766215 |
aagtgacaaaaggagctacacctgctactggcttgtgatgttgcatagccaagttcggtttctcatttaagtatttcctctatgtagtagccctatgcgt |
43766314 |
T |
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| Q |
217 |
ctgaaaattaaaatttgtttcacaaaagcat |
247 |
Q |
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| T |
43766315 |
ctgaaaattagaatttgtttcacaaaagcat |
43766345 |
T |
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Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 107 - 196
Target Start/End: Complemental strand, 42850814 - 42850725
Alignment:
| Q |
107 |
catttatgacaagtgacaaaaggagctacacctgctactggcttgtgatgttgcatagccaagttcggtttctcatttaagtatttcctc |
196 |
Q |
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| T |
42850814 |
catttatgacaagtgacaaaaggagctccacctgccactggcttgtgatgtcgcttagccaagttatgtttgtcccttaagtatttcctc |
42850725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 148
Target Start/End: Original strand, 28778589 - 28778660
Alignment:
| Q |
77 |
aaatctgcaggttgttgctgcagttctaagcatttatgacaagtgacaaaaggagctacacctgctactggc |
148 |
Q |
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| T |
28778589 |
aaatctgcgggaagttgcagcagatttaagcatttatgacaagtgacaaacggtgctgcacctgctactggc |
28778660 |
T |
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