View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3471_high_60 (Length: 243)
Name: NF3471_high_60
Description: NF3471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3471_high_60 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 45276618 - 45276383
Alignment:
| Q |
1 |
tgttgctctcaagttagacatcaacaaagcttatgacagattagattgggagtatctccgtgatataatgattcagatgagattttcagagaagtggatt |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45276618 |
tgttgctctcaagttagacatcagcaaagcttatgacagattagattgggagtatctccgtgatataatgattcagatgagattttcagagaagtggatt |
45276519 |
T |
|
| Q |
101 |
cgatggattatgctttgtgttgagaccgtcgattacacagttttggtcaatggtgtacaagttggacctctcattccgggtcgtggtattcggcaaggtg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45276518 |
cgatggattatgctttgtgttgagaccgtcgattacacagttttggtcaatggtgtacaagttggacctctcattccgggtcgtggtattcggcaaggtg |
45276419 |
T |
|
| Q |
201 |
acccgctatcaccttatcttctcattctctctgctg |
236 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
45276418 |
acccgctatcaccttatcttttcattctctgtgctg |
45276383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 204
Target Start/End: Original strand, 35320167 - 35320339
Alignment:
| Q |
32 |
tatgacagattagattgggagtatctccgtgatataatgattcagatgagattttcagagaagtggattcgatggattatgctttgtgttgagaccgtcg |
131 |
Q |
| |
|
||||| ||| |||||||||| ||||| || ||| | ||| || ||||| |||||||| | | ||| | | |||||||||| | ||||||||||| || | |
|
|
| T |
35320167 |
tatgatagactagattgggaatatcttcgggatgttatgcttaagatgggattttcacatagatgggtccaatggattatgttatgtgttgagactgtgg |
35320266 |
T |
|
| Q |
132 |
attacacagttttggtcaatggtgtacaagttggacctctcattccgggtcgtggtattcggcaaggtgaccc |
204 |
Q |
| |
|
|||||||||| ||||| | |||| || ||||| ||| | |||||||||| || || || ||||||||||| |
|
|
| T |
35320267 |
attacacagtgttggttatcggtgctcaggttgggccttttgttccgggtcgaggaatacgacaaggtgaccc |
35320339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 30471014 - 30470779
Alignment:
| Q |
1 |
tgttgctctcaagttagacatcaacaaagcttatgacagattagattgggagtatctccgtgatataatgattcagatgagattttcagagaagtggatt |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30471014 |
tgttgctctcaagttagacatcagcaaagcttatgaaagattagattgggagtatctccgtgatataatgattcagatgagattttcagagaagtggatt |
30470915 |
T |
|
| Q |
101 |
cgatggattatgctttgtgttgagaccgtcgattacacagttttggtcaatggtgtacaagttggacctctcattccgggtcgtggtattcggcaaggtg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30470914 |
cgatggattatgctttgtgttgagaccgtcgattacacagttttggtcaatggtgtacaagttggacctctcattccgggtcgtggtattcggcaaggtg |
30470815 |
T |
|
| Q |
201 |
acccgctatcaccttatcttctcattctctctgctg |
236 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
30470814 |
acccgctatcaccttatcttttcattctctgtgctg |
30470779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 44 - 201
Target Start/End: Original strand, 25734656 - 25734813
Alignment:
| Q |
44 |
gattgggagtatctccgtgatataatgattcagatgagattttcagagaagtggattcgatggattatgctttgtgttgagaccgtcgattacacagttt |
143 |
Q |
| |
|
||||||||||||||| | ||||| ||| |||||||| | ||||| | |||||| ||| ||| | |||||||||||||||||| | ||||||||||||| |
|
|
| T |
25734656 |
gattgggagtatctcagagatattatgcttcagatgggcttttctggaaagtgggttcagtgggtcatgctttgtgttgagacccttgattacacagttt |
25734755 |
T |
|
| Q |
144 |
tggtcaatggtgtacaagttggacctctcattccgggtcgtggtattcggcaaggtga |
201 |
Q |
| |
|
|||| || |||||| || ||||||| ||| ||| || |||||||| |||||||| |
|
|
| T |
25734756 |
tggttaacaatgtacatattagacctcttatttcggtgcgaggtattcgacaaggtga |
25734813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 3964675 - 3964523
Alignment:
| Q |
1 |
tgttgctctcaagttagacatcaacaaagcttatgacagattagattgggagtatctccgtgatataatgattcagatgagattttcagagaagtggatt |
100 |
Q |
| |
|
|||||| || ||||| ||||| | ||||| |||||||||||||||||||| || || || || || |||||||| ||| | |||||| ||| || |
|
|
| T |
3964675 |
tgttgcacttaagttggacattagtaaagcatatgacagattagattgggattacctacgagaaatcatgattcaaatgggtttttcatctcgatgggtt |
3964576 |
T |
|
| Q |
101 |
cgatggattatgctttgtgttgagaccgtcgattacacagttttggtcaatgg |
153 |
Q |
| |
|
| ||||||||||||||||||||||| || |||||| |||| ||||| ||||| |
|
|
| T |
3964575 |
agttggattatgctttgtgttgagacggttgattactcagtattggttaatgg |
3964523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 9611883 - 9611731
Alignment:
| Q |
1 |
tgttgctctcaagttagacatcaacaaagcttatgacagattagattgggagtatctccgtgatataatgattcagatgagattttcagagaagtggatt |
100 |
Q |
| |
|
|||||| || ||||| ||||| | ||||| |||||||||||||||||||| || || || || || |||||||| ||| | |||||| ||| || |
|
|
| T |
9611883 |
tgttgcacttaagttggacattagtaaagcatatgacagattagattgggattacctacgagaaatcatgattcaaatgggtttttcatctcgatgggtt |
9611784 |
T |
|
| Q |
101 |
cgatggattatgctttgtgttgagaccgtcgattacacagttttggtcaatgg |
153 |
Q |
| |
|
| ||||||||||||||||||||||| || |||||| | |||||||| ||||| |
|
|
| T |
9611783 |
agttggattatgctttgtgttgagacggttgattactcggttttggttaatgg |
9611731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 204
Target Start/End: Complemental strand, 33307277 - 33307105
Alignment:
| Q |
32 |
tatgacagattagattgggagtatctccgtgatataatgattcagatgagattttcagagaagtggattcgatggattatgctttgtgttgagaccgtcg |
131 |
Q |
| |
|
||||| ||| |||||||||| ||||| || ||| | ||| || ||||| |||||||| | | ||| | | |||||||||| | ||||||||||| || | |
|
|
| T |
33307277 |
tatgatagactagattgggaatatcttcgggatgttatgcttaagatgggattttcacatagatgggtccaatggattatgttatgtgttgagactgtgg |
33307178 |
T |
|
| Q |
132 |
attacacagttttggtcaatggtgtacaagttggacctctcattccgggtcgtggtattcggcaaggtgaccc |
204 |
Q |
| |
|
|||||||||| ||||| || |||| || ||||| ||| | |||||||||| || || || ||||||||||| |
|
|
| T |
33307177 |
attacacagtgttggttaacggtgctcaggttgggccttttgttccgggtcgaggaatacgacaaggtgaccc |
33307105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 26431574 - 26431422
Alignment:
| Q |
1 |
tgttgctctcaagttagacatcaacaaagcttatgacagattagattgggagtatctccgtgatataatgattcagatgagattttcagagaagtggatt |
100 |
Q |
| |
|
|||||| || ||||| ||||| | ||||| |||||||||||||||||||| || || | || || |||||||| ||||| |||||| ||| || |
|
|
| T |
26431574 |
tgttgcacttaagttggacattagtaaagcatatgacagattagattgggattacctacaagaaatcatgattcaaatgagtttttcatctcgatgggtt |
26431475 |
T |
|
| Q |
101 |
cgatggattatgctttgtgttgagaccgtcgattacacagttttggtcaatgg |
153 |
Q |
| |
|
| ||||||||||||||||||||||| || |||||| | |||||||| ||||| |
|
|
| T |
26431474 |
agttggattatgctttgtgttgagacggttgattactcggttttggttaatgg |
26431422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University